Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 GPR143P-201ENST00000434155 205 ntBASIC1.67□□□□□ -2.14
SHANK1Q9Y566 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC1.67□□□□□ -2.14
SHANK1Q9Y566 GPM6BP1-201ENST00000446387 144 ntBASIC1.67□□□□□ -2.14
SHANK1Q9Y566 AL031659.1-201ENST00000447075 539 ntBASIC1.67□□□□□ -2.14
SHANK1Q9Y566 ZNF114P1-201ENST00000453500 292 ntBASIC1.67□□□□□ -2.14
SHANK1Q9Y566 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC1.67□□□□□ -2.14
SHANK1Q9Y566 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC1.67□□□□□ -2.14
SHANK1Q9Y566 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC1.67□□□□□ -2.14
SHANK1Q9Y566 FAM92A1P1-201ENST00000528023 890 ntBASIC1.67□□□□□ -2.14
SHANK1Q9Y566 DNAJC8P1-201ENST00000554535 372 ntBASIC1.67□□□□□ -2.14
SHANK1Q9Y566 WISP1-OT1-201ENST00000602893 642 ntBASIC1.67□□□□□ -2.14
SHANK1Q9Y566 AP001981.2-201ENST00000603241 418 ntBASIC1.67□□□□□ -2.14
SHANK1Q9Y566 AL365204.3-201ENST00000612448 685 ntBASIC1.67□□□□□ -2.14
SHANK1Q9Y566 AC009090.3-201ENST00000616553 565 ntBASIC1.67□□□□□ -2.14
SHANK1Q9Y566 ZNF519P1-201ENST00000449011 1626 ntBASIC1.67□□□□□ -2.14
SHANK1Q9Y566 AC007785.2-201ENST00000598627 1916 ntBASIC1.67□□□□□ -2.14
SHANK1Q9Y566 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
SHANK1Q9Y566 AK9-203ENST00000368948 2478 ntTSL 5 BASIC1.67□□□□□ -2.14
SHANK1Q9Y566 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
SHANK1Q9Y566 RNU6-946P-201ENST00000383878 107 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 RNU2-33P-201ENST00000410344 192 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 Y_RNA.598-201ENST00000410480 95 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 Y_RNA.608-201ENST00000410647 95 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 TEX41-202ENST00000414256 604 ntTSL 5 BASIC1.66□□□□□ -2.14
SHANK1Q9Y566 AC009518.2-201ENST00000418056 731 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC1.66□□□□□ -2.14
SHANK1Q9Y566 HMGB1P9-201ENST00000429856 646 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 RPS15AP7-201ENST00000439294 405 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 KATNBL1P6-201ENST00000453433 915 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC1.66□□□□□ -2.14
SHANK1Q9Y566 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC1.66□□□□□ -2.14
SHANK1Q9Y566 ARPC3P2-201ENST00000457786 533 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC1.66□□□□□ -2.14
SHANK1Q9Y566 RPL21P39-201ENST00000463605 483 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 OARD1-209ENST00000471367 401 ntTSL 2 BASIC1.66□□□□□ -2.14
SHANK1Q9Y566 RPL21P93-201ENST00000480465 489 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 AC233702.1-201ENST00000482905 502 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 MTND1P3-201ENST00000484956 952 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 AC093591.1-201ENST00000491435 481 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC1.66□□□□□ -2.14
SHANK1Q9Y566 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC1.66□□□□□ -2.14
SHANK1Q9Y566 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC1.66□□□□□ -2.14
SHANK1Q9Y566 NRON-201ENST00000517270 370 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 AP003122.4-201ENST00000530980 758 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC1.66□□□□□ -2.14
SHANK1Q9Y566 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC1.66□□□□□ -2.14
SHANK1Q9Y566 MIR5694-201ENST00000581190 76 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 AC097468.3-201ENST00000607956 456 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 AC005332.10-201ENST00000612725 619 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 AC010678.1-201ENST00000614118 713 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 MTND4P1-201ENST00000457501 1466 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 IL33-202ENST00000417746 2327 ntTSL 2 BASIC1.66□□□□□ -2.14
SHANK1Q9Y566 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
SHANK1Q9Y566 RNU1-105P-201ENST00000363470 161 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 RNU6-511P-201ENST00000363496 107 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 RNU5E-5P-201ENST00000365379 116 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 RNY3P10-201ENST00000384764 102 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 MIR144-201ENST00000384886 86 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 RNU6-1077P-201ENST00000410506 102 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 RNU2-66P-201ENST00000410650 161 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC1.66□□□□□ -2.14
SHANK1Q9Y566 HMGB1P31-201ENST00000437242 427 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 AL021397.1-201ENST00000451806 248 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC1.66□□□□□ -2.14
SHANK1Q9Y566 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC1.66□□□□□ -2.14
SHANK1Q9Y566 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC1.66□□□□□ -2.14
SHANK1Q9Y566 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
SHANK1Q9Y566 AC112204.1-201ENST00000502591 103 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC1.66□□□□□ -2.14
SHANK1Q9Y566 AC093534.1-201ENST00000504977 132 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 AC010587.1-201ENST00000505809 469 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC1.66□□□□□ -2.14
SHANK1Q9Y566 MTCO3P7-201ENST00000510008 774 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC1.66□□□□□ -2.14
SHANK1Q9Y566 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC1.66□□□□□ -2.14
SHANK1Q9Y566 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC1.66□□□□□ -2.14
SHANK1Q9Y566 RNU6-927P-201ENST00000516199 100 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 RNU6-250P-201ENST00000516958 103 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 CASP1P1-201ENST00000526345 212 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 AP003181.2-201ENST00000528941 181 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.66□□□□□ -2.14
SHANK1Q9Y566 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC1.66□□□□□ -2.14
SHANK1Q9Y566 AP000403.1-201ENST00000603349 851 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 AC174048.1-201ENST00000603389 144 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 AC013476.2-201ENST00000614456 459 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 SDR42E1P2-201ENST00000614861 481 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 AP001506.1-201ENST00000615444 211 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 U2.21-201ENST00000637295 81 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC1.66□□□□□ -2.14
SHANK1Q9Y566 KPNA2P1-201ENST00000458289 1591 ntBASIC1.66□□□□□ -2.14
SHANK1Q9Y566 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.14
SHANK1Q9Y566 AL139276.1-201ENST00000311910 1001 ntBASIC1.65□□□□□ -2.14
SHANK1Q9Y566 Y_RNA.159-201ENST00000363674 87 ntBASIC1.65□□□□□ -2.14
SHANK1Q9Y566 RNU6-553P-201ENST00000364047 96 ntBASIC1.65□□□□□ -2.14
SHANK1Q9Y566 RNA5SP252-201ENST00000391131 119 ntBASIC1.65□□□□□ -2.14
SHANK1Q9Y566 RPL23AP32-201ENST00000395315 459 ntBASIC1.65□□□□□ -2.14
SHANK1Q9Y566 MIR1294-201ENST00000408503 142 ntBASIC1.65□□□□□ -2.14
SHANK1Q9Y566 RNU2-68P-201ENST00000410878 191 ntBASIC1.65□□□□□ -2.14
SHANK1Q9Y566 RPS3AP3-201ENST00000411933 242 ntBASIC1.65□□□□□ -2.14
SHANK1Q9Y566 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC1.65□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 149.7 ms