Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 RNU6-384P-201ENST00000364900 104 ntBASIC2.32□□□□□ -2.04
FOXA2Q9Y261 RNU4-48P-201ENST00000365559 182 ntBASIC2.32□□□□□ -2.04
FOXA2Q9Y261 RNU6-1029P-201ENST00000384109 107 ntBASIC2.32□□□□□ -2.04
FOXA2Q9Y261 SNORA9-201ENST00000384215 133 ntBASIC2.32□□□□□ -2.04
FOXA2Q9Y261 MIR181A2-201ENST00000384863 110 ntBASIC2.32□□□□□ -2.04
FOXA2Q9Y261 SNORA48.5-201ENST00000391143 135 ntBASIC2.32□□□□□ -2.04
FOXA2Q9Y261 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.32□□□□□ -2.04
FOXA2Q9Y261 RNU2-63P-201ENST00000410792 194 ntBASIC2.32□□□□□ -2.04
FOXA2Q9Y261 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC2.32□□□□□ -2.04
FOXA2Q9Y261 RBM6-203ENST00000421682 684 ntTSL 2 BASIC2.32□□□□□ -2.04
FOXA2Q9Y261 AC003685.2-201ENST00000422795 395 ntBASIC2.32□□□□□ -2.04
FOXA2Q9Y261 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC2.32□□□□□ -2.04
FOXA2Q9Y261 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC2.32□□□□□ -2.04
FOXA2Q9Y261 TEX41-209ENST00000451478 452 ntTSL 2 BASIC2.32□□□□□ -2.04
FOXA2Q9Y261 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC2.32□□□□□ -2.04
FOXA2Q9Y261 AC073901.1-201ENST00000462471 408 ntBASIC2.32□□□□□ -2.04
FOXA2Q9Y261 AC006512.1-201ENST00000468816 291 ntBASIC2.32□□□□□ -2.04
FOXA2Q9Y261 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC2.32□□□□□ -2.04
FOXA2Q9Y261 MEPE-206ENST00000511670 550 ntTSL 4 BASIC2.32□□□□□ -2.04
FOXA2Q9Y261 SNORA9.3-201ENST00000516383 129 ntBASIC2.32□□□□□ -2.04
FOXA2Q9Y261 Y_RNA.688-201ENST00000516565 95 ntBASIC2.32□□□□□ -2.04
FOXA2Q9Y261 AP002963.1-201ENST00000530590 184 ntBASIC2.32□□□□□ -2.04
FOXA2Q9Y261 AL133241.1-201ENST00000556832 487 ntBASIC2.32□□□□□ -2.04
FOXA2Q9Y261 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC2.32□□□□□ -2.04
FOXA2Q9Y261 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.32□□□□□ -2.04
FOXA2Q9Y261 MIR4528-201ENST00000577763 90 ntBASIC2.32□□□□□ -2.04
FOXA2Q9Y261 MIR4775-201ENST00000581168 75 ntBASIC2.32□□□□□ -2.04
FOXA2Q9Y261 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC2.32□□□□□ -2.04
FOXA2Q9Y261 AC021646.1-201ENST00000605469 484 ntBASIC2.32□□□□□ -2.04
FOXA2Q9Y261 AC008945.2-201ENST00000606056 604 ntBASIC2.32□□□□□ -2.04
FOXA2Q9Y261 AP001486.3-201ENST00000615334 372 ntBASIC2.32□□□□□ -2.04
FOXA2Q9Y261 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC2.32□□□□□ -2.04
FOXA2Q9Y261 AC026585.1-201ENST00000619582 524 ntBASIC2.32□□□□□ -2.04
FOXA2Q9Y261 MIR5739-201ENST00000619803 80 ntBASIC2.32□□□□□ -2.04
FOXA2Q9Y261 CR381653.2-201ENST00000624041 768 ntBASIC2.32□□□□□ -2.04
FOXA2Q9Y261 AC009161.2-201ENST00000624626 138 ntBASIC2.32□□□□□ -2.04
FOXA2Q9Y261 AC096644.4-201ENST00000563417 2912 ntBASIC2.32□□□□□ -2.04
FOXA2Q9Y261 AC006020.1-201ENST00000420179 1854 ntBASIC2.32□□□□□ -2.04
FOXA2Q9Y261 AL161431.1-201ENST00000618966 4205 ntBASIC2.32□□□□□ -2.04
FOXA2Q9Y261 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
FOXA2Q9Y261 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
FOXA2Q9Y261 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
FOXA2Q9Y261 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
FOXA2Q9Y261 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.31□□□□□ -2.04
FOXA2Q9Y261 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.31□□□□□ -2.04
FOXA2Q9Y261 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.31□□□□□ -2.04
FOXA2Q9Y261 Y_RNA.77-201ENST00000362962 107 ntBASIC2.31□□□□□ -2.04
FOXA2Q9Y261 RNU6-942P-201ENST00000363002 107 ntBASIC2.31□□□□□ -2.04
FOXA2Q9Y261 RNU6-348P-201ENST00000384386 107 ntBASIC2.31□□□□□ -2.04
FOXA2Q9Y261 SNORD116-20-201ENST00000384529 92 ntBASIC2.31□□□□□ -2.04
FOXA2Q9Y261 MIR483-201ENST00000385070 76 ntBASIC2.31□□□□□ -2.04
FOXA2Q9Y261 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
FOXA2Q9Y261 RAP1BP3-201ENST00000407180 549 ntBASIC2.31□□□□□ -2.04
FOXA2Q9Y261 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC2.31□□□□□ -2.04
FOXA2Q9Y261 UBE2V1P10-201ENST00000414685 269 ntBASIC2.31□□□□□ -2.04
FOXA2Q9Y261 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC2.31□□□□□ -2.04
FOXA2Q9Y261 RPL35AP12-201ENST00000425362 338 ntBASIC2.31□□□□□ -2.04
FOXA2Q9Y261 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
FOXA2Q9Y261 AL596276.1-201ENST00000434465 418 ntBASIC2.31□□□□□ -2.04
FOXA2Q9Y261 MTND4P32-201ENST00000437189 1237 ntBASIC2.31□□□□□ -2.04
FOXA2Q9Y261 AL031667.1-201ENST00000440222 725 ntBASIC2.31□□□□□ -2.04
FOXA2Q9Y261 AC133134.1-201ENST00000466800 359 ntBASIC2.31□□□□□ -2.04
FOXA2Q9Y261 MTND3P25-201ENST00000509243 135 ntBASIC2.31□□□□□ -2.04
FOXA2Q9Y261 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.31□□□□□ -2.04
FOXA2Q9Y261 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC2.31□□□□□ -2.04
FOXA2Q9Y261 SCGB1D5P-201ENST00000515134 247 ntBASIC2.31□□□□□ -2.04
FOXA2Q9Y261 RNU1-86P-201ENST00000516108 154 ntBASIC2.31□□□□□ -2.04
FOXA2Q9Y261 RNA5SP76-201ENST00000516277 87 ntBASIC2.31□□□□□ -2.04
FOXA2Q9Y261 RNU1-107P-201ENST00000516617 154 ntBASIC2.31□□□□□ -2.04
FOXA2Q9Y261 RPL7P20-201ENST00000520308 745 ntBASIC2.31□□□□□ -2.04
FOXA2Q9Y261 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC2.31□□□□□ -2.04
FOXA2Q9Y261 AC027176.1-201ENST00000560204 514 ntBASIC2.31□□□□□ -2.04
FOXA2Q9Y261 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.31□□□□□ -2.04
FOXA2Q9Y261 AC119751.7-201ENST00000600494 245 ntBASIC2.31□□□□□ -2.04
FOXA2Q9Y261 AL138963.2-201ENST00000605137 226 ntBASIC2.31□□□□□ -2.04
FOXA2Q9Y261 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.31□□□□□ -2.04
FOXA2Q9Y261 AC093788.1-201ENST00000609356 927 ntBASIC2.31□□□□□ -2.04
FOXA2Q9Y261 ATP5A1P2-202ENST00000616464 443 ntBASIC2.31□□□□□ -2.04
FOXA2Q9Y261 AC099842.1-201ENST00000619919 596 ntBASIC2.31□□□□□ -2.04
FOXA2Q9Y261 AC022079.1-201ENST00000621546 602 ntBASIC2.31□□□□□ -2.04
FOXA2Q9Y261 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC2.31□□□□□ -2.04
FOXA2Q9Y261 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
FOXA2Q9Y261 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
FOXA2Q9Y261 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
FOXA2Q9Y261 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
FOXA2Q9Y261 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2.3□□□□□ -2.04
FOXA2Q9Y261 RNA5SP393-201ENST00000363423 117 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 RNA5SP240-201ENST00000365355 128 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 RNU6-843P-201ENST00000384454 104 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 RNU2-9P-201ENST00000410194 145 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.3□□□□□ -2.04
FOXA2Q9Y261 AC007064.1-201ENST00000412238 351 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC2.3□□□□□ -2.04
FOXA2Q9Y261 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC2.3□□□□□ -2.04
FOXA2Q9Y261 EIF4EP4-201ENST00000424916 578 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC2.3□□□□□ -2.04
FOXA2Q9Y261 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC2.3□□□□□ -2.04
FOXA2Q9Y261 HMGB1P31-201ENST00000437242 427 ntBASIC2.3□□□□□ -2.04
FOXA2Q9Y261 MTND1P18-201ENST00000448191 573 ntBASIC2.3□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 91.3 ms