Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 AP000873.1-201ENST00000463987 400 ntBASIC5.37□□□□□ -1.55
ZC3H4Q9UPT8 RPS20P22-201ENST00000473700 357 ntBASIC5.37□□□□□ -1.55
ZC3H4Q9UPT8 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC5.37□□□□□ -1.55
ZC3H4Q9UPT8 AC078918.1-201ENST00000498515 228 ntBASIC5.37□□□□□ -1.55
ZC3H4Q9UPT8 Y_RNA.662-201ENST00000516028 97 ntBASIC5.37□□□□□ -1.55
ZC3H4Q9UPT8 RNU2-58P-201ENST00000516403 183 ntBASIC5.37□□□□□ -1.55
ZC3H4Q9UPT8 SNORA31.18-201ENST00000517043 134 ntBASIC5.37□□□□□ -1.55
ZC3H4Q9UPT8 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC5.37□□□□□ -1.55
ZC3H4Q9UPT8 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC5.37□□□□□ -1.55
ZC3H4Q9UPT8 AC072026.1-201ENST00000605023 201 ntBASIC5.37□□□□□ -1.55
ZC3H4Q9UPT8 MIR6891-201ENST00000618788 93 ntBASIC5.37□□□□□ -1.55
ZC3H4Q9UPT8 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
ZC3H4Q9UPT8 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
ZC3H4Q9UPT8 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC5.37□□□□□ -1.55
ZC3H4Q9UPT8 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC5.37□□□□□ -1.55
ZC3H4Q9UPT8 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.37□□□□□ -1.55
ZC3H4Q9UPT8 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
ZC3H4Q9UPT8 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
ZC3H4Q9UPT8 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
ZC3H4Q9UPT8 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC5.36□□□□□ -1.55
ZC3H4Q9UPT8 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC5.36□□□□□ -1.55
ZC3H4Q9UPT8 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
ZC3H4Q9UPT8 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
ZC3H4Q9UPT8 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
ZC3H4Q9UPT8 DEFB108F-201ENST00000344638 222 ntBASIC5.36□□□□□ -1.55
ZC3H4Q9UPT8 Y_RNA.8-201ENST00000362353 102 ntBASIC5.36□□□□□ -1.55
ZC3H4Q9UPT8 RNU6-740P-201ENST00000364734 105 ntBASIC5.36□□□□□ -1.55
ZC3H4Q9UPT8 SNORD113-1-201ENST00000365321 69 ntBASIC5.36□□□□□ -1.55
ZC3H4Q9UPT8 RNU6-21P-201ENST00000384710 107 ntBASIC5.36□□□□□ -1.55
ZC3H4Q9UPT8 GOT2P5-201ENST00000433995 546 ntBASIC5.36□□□□□ -1.55
ZC3H4Q9UPT8 AC009296.1-201ENST00000443146 155 ntBASIC5.36□□□□□ -1.55
ZC3H4Q9UPT8 AL078601.1-201ENST00000444542 271 ntBASIC5.36□□□□□ -1.55
ZC3H4Q9UPT8 AC091021.1-201ENST00000468051 388 ntBASIC5.36□□□□□ -1.55
ZC3H4Q9UPT8 SCARNA15.2-201ENST00000516409 127 ntBASIC5.36□□□□□ -1.55
ZC3H4Q9UPT8 RNA5SP49-201ENST00000516450 115 ntBASIC5.36□□□□□ -1.55
ZC3H4Q9UPT8 RNU2-31P-201ENST00000516954 155 ntBASIC5.36□□□□□ -1.55
ZC3H4Q9UPT8 AC005868.1-201ENST00000536421 331 ntBASIC5.36□□□□□ -1.55
ZC3H4Q9UPT8 TVP23BP1-201ENST00000557500 617 ntBASIC5.36□□□□□ -1.55
ZC3H4Q9UPT8 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC5.36□□□□□ -1.55
ZC3H4Q9UPT8 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC5.36□□□□□ -1.55
ZC3H4Q9UPT8 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC5.36□□□□□ -1.55
ZC3H4Q9UPT8 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
ZC3H4Q9UPT8 MAPK10-372ENST00000641954 3413 ntBASIC5.36□□□□□ -1.55
ZC3H4Q9UPT8 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC5.35□□□□□ -1.55
ZC3H4Q9UPT8 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
ZC3H4Q9UPT8 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
ZC3H4Q9UPT8 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
ZC3H4Q9UPT8 SNORA25.1-201ENST00000362326 128 ntBASIC5.35□□□□□ -1.55
ZC3H4Q9UPT8 RNU6-968P-201ENST00000384076 107 ntBASIC5.35□□□□□ -1.55
ZC3H4Q9UPT8 RNU6-514P-201ENST00000384208 107 ntBASIC5.35□□□□□ -1.55
ZC3H4Q9UPT8 RNU6-166P-201ENST00000384371 107 ntBASIC5.35□□□□□ -1.55
ZC3H4Q9UPT8 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC5.35□□□□□ -1.55
ZC3H4Q9UPT8 AC124916.1-201ENST00000444020 547 ntBASIC5.35□□□□□ -1.55
ZC3H4Q9UPT8 AL353705.4-201ENST00000449661 238 ntBASIC5.35□□□□□ -1.55
ZC3H4Q9UPT8 MRPL42P6-201ENST00000486397 371 ntBASIC5.35□□□□□ -1.55
ZC3H4Q9UPT8 AC099522.1-202ENST00000514718 367 ntBASIC5.35□□□□□ -1.55
ZC3H4Q9UPT8 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC5.35□□□□□ -1.55
ZC3H4Q9UPT8 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC5.35□□□□□ -1.55
ZC3H4Q9UPT8 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC5.35□□□□□ -1.55
ZC3H4Q9UPT8 HSPE1P5-201ENST00000561489 272 ntBASIC5.35□□□□□ -1.55
ZC3H4Q9UPT8 MIR5685-201ENST00000579080 79 ntBASIC5.35□□□□□ -1.55
ZC3H4Q9UPT8 AC012468.1-201ENST00000604888 430 ntBASIC5.35□□□□□ -1.55
ZC3H4Q9UPT8 AC068631.1-219ENST00000625826 668 ntTSL 5 BASIC5.35□□□□□ -1.55
ZC3H4Q9UPT8 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC5.35□□□□□ -1.55
ZC3H4Q9UPT8 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
ZC3H4Q9UPT8 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
ZC3H4Q9UPT8 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
ZC3H4Q9UPT8 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC5.35□□□□□ -1.55
ZC3H4Q9UPT8 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC5.35□□□□□ -1.55
ZC3H4Q9UPT8 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
ZC3H4Q9UPT8 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC5.34□□□□□ -1.55
ZC3H4Q9UPT8 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
ZC3H4Q9UPT8 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
ZC3H4Q9UPT8 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
ZC3H4Q9UPT8 RNU6-78P-201ENST00000362897 107 ntBASIC5.34□□□□□ -1.55
ZC3H4Q9UPT8 Y_RNA.286-201ENST00000364813 102 ntBASIC5.34□□□□□ -1.55
ZC3H4Q9UPT8 Y_RNA.304-201ENST00000365011 112 ntBASIC5.34□□□□□ -1.55
ZC3H4Q9UPT8 MIR491-201ENST00000384877 84 ntBASIC5.34□□□□□ -1.55
ZC3H4Q9UPT8 MIR634-201ENST00000385208 97 ntBASIC5.34□□□□□ -1.55
ZC3H4Q9UPT8 SNORA40C-201ENST00000391285 128 ntBASIC5.34□□□□□ -1.55
ZC3H4Q9UPT8 RN7SKP51-201ENST00000410781 304 ntBASIC5.34□□□□□ -1.55
ZC3H4Q9UPT8 AC093578.1-201ENST00000415219 368 ntBASIC5.34□□□□□ -1.55
ZC3H4Q9UPT8 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC5.34□□□□□ -1.55
ZC3H4Q9UPT8 AC005002.2-201ENST00000438228 269 ntBASIC5.34□□□□□ -1.55
ZC3H4Q9UPT8 RPS15AP7-201ENST00000439294 405 ntBASIC5.34□□□□□ -1.55
ZC3H4Q9UPT8 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC5.34□□□□□ -1.55
ZC3H4Q9UPT8 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC5.34□□□□□ -1.55
ZC3H4Q9UPT8 ANP32BP2-201ENST00000454525 545 ntBASIC5.34□□□□□ -1.55
ZC3H4Q9UPT8 RPL23AP81-201ENST00000455252 467 ntBASIC5.34□□□□□ -1.55
ZC3H4Q9UPT8 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC5.34□□□□□ -1.55
ZC3H4Q9UPT8 AC092798.1-201ENST00000458542 409 ntBASIC5.34□□□□□ -1.55
ZC3H4Q9UPT8 RPL23AP65-201ENST00000475608 468 ntBASIC5.34□□□□□ -1.55
ZC3H4Q9UPT8 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC5.34□□□□□ -1.55
ZC3H4Q9UPT8 RNU7-110P-201ENST00000516891 62 ntBASIC5.34□□□□□ -1.55
ZC3H4Q9UPT8 MAL2-206ENST00000522187 547 ntTSL 4 BASIC5.34□□□□□ -1.55
ZC3H4Q9UPT8 IGKV2OR2-2-201ENST00000605025 300 ntBASIC5.34□□□□□ -1.55
ZC3H4Q9UPT8 SNORD113-5-201ENST00000607261 78 ntBASIC5.34□□□□□ -1.55
ZC3H4Q9UPT8 AC019176.2-201ENST00000611579 315 ntBASIC5.34□□□□□ -1.55
ZC3H4Q9UPT8 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
ZC3H4Q9UPT8 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 136.1 ms