Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 AL390240.1-201ENST00000612950 384 ntBASIC3.36□□□□□ -1.87
EBF3Q9H4W6 AL157817.1-201ENST00000614264 790 ntBASIC3.36□□□□□ -1.87
EBF3Q9H4W6 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.36□□□□□ -1.87
EBF3Q9H4W6 DDX10P1-201ENST00000448545 1933 ntBASIC3.36□□□□□ -1.87
EBF3Q9H4W6 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.36□□□□□ -1.87
EBF3Q9H4W6 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.36□□□□□ -1.87
EBF3Q9H4W6 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
EBF3Q9H4W6 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
EBF3Q9H4W6 AC091152.2-201ENST00000591628 2569 ntBASIC3.35□□□□□ -1.87
EBF3Q9H4W6 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
EBF3Q9H4W6 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC3.35□□□□□ -1.87
EBF3Q9H4W6 Y_RNA.5-201ENST00000362334 102 ntBASIC3.35□□□□□ -1.87
EBF3Q9H4W6 RNU6-960P-201ENST00000364056 120 ntBASIC3.35□□□□□ -1.87
EBF3Q9H4W6 RNU6-188P-201ENST00000364207 107 ntBASIC3.35□□□□□ -1.87
EBF3Q9H4W6 SNORD115-7-201ENST00000365306 82 ntBASIC3.35□□□□□ -1.87
EBF3Q9H4W6 RNU6-26P-201ENST00000383985 107 ntBASIC3.35□□□□□ -1.87
EBF3Q9H4W6 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
EBF3Q9H4W6 RNU6-1106P-201ENST00000390845 107 ntBASIC3.35□□□□□ -1.87
EBF3Q9H4W6 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.35□□□□□ -1.87
EBF3Q9H4W6 RPS12P24-201ENST00000412619 387 ntBASIC3.35□□□□□ -1.87
EBF3Q9H4W6 OR6C66P-201ENST00000414917 930 ntBASIC3.35□□□□□ -1.87
EBF3Q9H4W6 AC244098.2-201ENST00000422068 99 ntBASIC3.35□□□□□ -1.87
EBF3Q9H4W6 COTL1P1-201ENST00000422309 375 ntBASIC3.35□□□□□ -1.87
EBF3Q9H4W6 MTCYBP9-201ENST00000431021 303 ntBASIC3.35□□□□□ -1.87
EBF3Q9H4W6 AL160004.2-201ENST00000432935 350 ntBASIC3.35□□□□□ -1.87
EBF3Q9H4W6 SNRPEP4-201ENST00000435815 279 ntBASIC3.35□□□□□ -1.87
EBF3Q9H4W6 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.35□□□□□ -1.87
EBF3Q9H4W6 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.35□□□□□ -1.87
EBF3Q9H4W6 AL162389.1-201ENST00000449233 177 ntBASIC3.35□□□□□ -1.87
EBF3Q9H4W6 MIR2053-201ENST00000459295 91 ntBASIC3.35□□□□□ -1.87
EBF3Q9H4W6 MTATP8P1-201ENST00000467115 207 ntBASIC3.35□□□□□ -1.87
EBF3Q9H4W6 Y_RNA.654-201ENST00000497848 106 ntBASIC3.35□□□□□ -1.87
EBF3Q9H4W6 MTCYBP40-201ENST00000509390 1135 ntBASIC3.35□□□□□ -1.87
EBF3Q9H4W6 RNA5SP503-201ENST00000517047 117 ntBASIC3.35□□□□□ -1.87
EBF3Q9H4W6 RNA5SP454-201ENST00000517231 127 ntBASIC3.35□□□□□ -1.87
EBF3Q9H4W6 AP003122.3-201ENST00000526316 255 ntBASIC3.35□□□□□ -1.87
EBF3Q9H4W6 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.35□□□□□ -1.87
EBF3Q9H4W6 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.35□□□□□ -1.87
EBF3Q9H4W6 MIR4790-201ENST00000577799 79 ntBASIC3.35□□□□□ -1.87
EBF3Q9H4W6 MIR3668-201ENST00000582138 75 ntBASIC3.35□□□□□ -1.87
EBF3Q9H4W6 MIR3149-201ENST00000584629 83 ntBASIC3.35□□□□□ -1.87
EBF3Q9H4W6 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC3.35□□□□□ -1.87
EBF3Q9H4W6 AL355598.1-201ENST00000604169 202 ntBASIC3.35□□□□□ -1.87
EBF3Q9H4W6 HMGN2P28-201ENST00000606102 262 ntBASIC3.35□□□□□ -1.87
EBF3Q9H4W6 TUG1_2.1-201ENST00000614234 87 ntBASIC3.35□□□□□ -1.87
EBF3Q9H4W6 AP001486.3-201ENST00000615334 372 ntBASIC3.35□□□□□ -1.87
EBF3Q9H4W6 XIST_intron.1-201ENST00000619444 68 ntBASIC3.35□□□□□ -1.87
EBF3Q9H4W6 AL021368.2-201ENST00000606125 5352 ntBASIC3.35□□□□□ -1.87
EBF3Q9H4W6 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.35□□□□□ -1.87
EBF3Q9H4W6 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC3.35□□□□□ -1.87
EBF3Q9H4W6 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
EBF3Q9H4W6 MTND5P19-201ENST00000424872 1794 ntBASIC3.35□□□□□ -1.87
EBF3Q9H4W6 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
EBF3Q9H4W6 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
EBF3Q9H4W6 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.34□□□□□ -1.87
EBF3Q9H4W6 RNU6-61P-201ENST00000365528 109 ntBASIC3.34□□□□□ -1.87
EBF3Q9H4W6 TSHB-202ENST00000369517 474 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
EBF3Q9H4W6 RNU6-1013P-201ENST00000384180 107 ntBASIC3.34□□□□□ -1.87
EBF3Q9H4W6 RNU6-784P-201ENST00000384330 106 ntBASIC3.34□□□□□ -1.87
EBF3Q9H4W6 SNORA24.1-201ENST00000384401 135 ntBASIC3.34□□□□□ -1.87
EBF3Q9H4W6 AL138885.1-201ENST00000405921 675 ntBASIC3.34□□□□□ -1.87
EBF3Q9H4W6 AC093106.2-201ENST00000428212 385 ntBASIC3.34□□□□□ -1.87
EBF3Q9H4W6 RPL23AP69-201ENST00000431134 458 ntBASIC3.34□□□□□ -1.87
EBF3Q9H4W6 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC3.34□□□□□ -1.87
EBF3Q9H4W6 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.34□□□□□ -1.87
EBF3Q9H4W6 RPL30P15-201ENST00000457129 321 ntBASIC3.34□□□□□ -1.87
EBF3Q9H4W6 SNRPFP3-201ENST00000457792 225 ntBASIC3.34□□□□□ -1.87
EBF3Q9H4W6 AC098591.2-201ENST00000510152 315 ntBASIC3.34□□□□□ -1.87
EBF3Q9H4W6 AC026801.2-201ENST00000515352 425 ntBASIC3.34□□□□□ -1.87
EBF3Q9H4W6 MTND4P7-201ENST00000523876 130 ntBASIC3.34□□□□□ -1.87
EBF3Q9H4W6 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.34□□□□□ -1.87
EBF3Q9H4W6 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.34□□□□□ -1.87
EBF3Q9H4W6 IMMP1LP2-201ENST00000552954 492 ntBASIC3.34□□□□□ -1.87
EBF3Q9H4W6 AL121603.1-201ENST00000553815 142 ntBASIC3.34□□□□□ -1.87
EBF3Q9H4W6 TRAV37-201ENST00000553906 342 ntBASIC3.34□□□□□ -1.87
EBF3Q9H4W6 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC3.34□□□□□ -1.87
EBF3Q9H4W6 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.34□□□□□ -1.87
EBF3Q9H4W6 AC073539.2-201ENST00000597113 165 ntBASIC3.34□□□□□ -1.87
EBF3Q9H4W6 7SK.7-201ENST00000603504 247 ntBASIC3.34□□□□□ -1.87
EBF3Q9H4W6 CYP2C61P-201ENST00000604072 290 ntBASIC3.34□□□□□ -1.87
EBF3Q9H4W6 AC012443.1-201ENST00000605605 231 ntBASIC3.34□□□□□ -1.87
EBF3Q9H4W6 AC005014.2-201ENST00000607795 599 ntBASIC3.34□□□□□ -1.87
EBF3Q9H4W6 SNHG22-203ENST00000617833 660 ntBASIC3.34□□□□□ -1.87
EBF3Q9H4W6 AC110801.1-201ENST00000623590 212 ntBASIC3.34□□□□□ -1.87
EBF3Q9H4W6 AC018692.3-201ENST00000623929 123 ntBASIC3.34□□□□□ -1.87
EBF3Q9H4W6 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
EBF3Q9H4W6 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
EBF3Q9H4W6 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
EBF3Q9H4W6 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.33□□□□□ -1.88
EBF3Q9H4W6 RNA5SP189-201ENST00000364920 115 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 RNU6-1318P-201ENST00000365389 103 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 Y_RNA.452-201ENST00000384202 108 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 Y_RNA.576-201ENST00000384781 102 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 CISD1P1-201ENST00000393907 327 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 AL139397.2-201ENST00000404529 772 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 Y_RNA.646-201ENST00000410980 101 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 RPL21P24-201ENST00000413752 448 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 UBE2FP1-201ENST00000416536 447 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 NUP35P1-201ENST00000422734 947 ntBASIC3.33□□□□□ -1.88
EBF3Q9H4W6 RAC1P6-201ENST00000423911 575 ntBASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 148.7 ms