Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 HSPA8P4-201ENST00000511877 1920 ntBASIC2.4□□□□□ -2.02
LIME1Q9H400 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC2.4□□□□□ -2.02
LIME1Q9H400 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.4□□□□□ -2.02
LIME1Q9H400 AC096644.4-201ENST00000563417 2912 ntBASIC2.4□□□□□ -2.02
LIME1Q9H400 ZBTB8OSP1-201ENST00000342688 498 ntBASIC2.4□□□□□ -2.03
LIME1Q9H400 RNU6-859P-201ENST00000362728 107 ntBASIC2.4□□□□□ -2.03
LIME1Q9H400 RNA5SP139-201ENST00000364340 117 ntBASIC2.4□□□□□ -2.03
LIME1Q9H400 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC2.4□□□□□ -2.03
LIME1Q9H400 Z98749.2-208ENST00000381646 500 ntBASIC2.4□□□□□ -2.03
LIME1Q9H400 RNU6-1027P-201ENST00000383998 107 ntBASIC2.4□□□□□ -2.03
LIME1Q9H400 AL138827.1-201ENST00000402666 306 ntBASIC2.4□□□□□ -2.03
LIME1Q9H400 RNU6-1025P-201ENST00000410629 104 ntBASIC2.4□□□□□ -2.03
LIME1Q9H400 RNU4-46P-201ENST00000410818 138 ntBASIC2.4□□□□□ -2.03
LIME1Q9H400 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
LIME1Q9H400 RPS15AP5-201ENST00000436276 388 ntBASIC2.4□□□□□ -2.03
LIME1Q9H400 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.4□□□□□ -2.03
LIME1Q9H400 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC2.4□□□□□ -2.03
LIME1Q9H400 AL360271.2-201ENST00000447710 161 ntBASIC2.4□□□□□ -2.03
LIME1Q9H400 RPL23AP20-201ENST00000447965 421 ntBASIC2.4□□□□□ -2.03
LIME1Q9H400 MTND1P18-201ENST00000448191 573 ntBASIC2.4□□□□□ -2.03
LIME1Q9H400 GSTA11P-201ENST00000452866 669 ntBASIC2.4□□□□□ -2.03
LIME1Q9H400 snoU13.26-201ENST00000459452 105 ntBASIC2.4□□□□□ -2.03
LIME1Q9H400 RN7SL297P-201ENST00000483161 293 ntBASIC2.4□□□□□ -2.03
LIME1Q9H400 RPS15AP34-201ENST00000487776 387 ntBASIC2.4□□□□□ -2.03
LIME1Q9H400 AC022493.1-201ENST00000492984 337 ntBASIC2.4□□□□□ -2.03
LIME1Q9H400 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.4□□□□□ -2.03
LIME1Q9H400 AC092436.1-201ENST00000506450 503 ntBASIC2.4□□□□□ -2.03
LIME1Q9H400 AC104806.1-201ENST00000508720 308 ntBASIC2.4□□□□□ -2.03
LIME1Q9H400 AC008549.1-201ENST00000512900 643 ntBASIC2.4□□□□□ -2.03
LIME1Q9H400 AC105417.1-201ENST00000514691 285 ntBASIC2.4□□□□□ -2.03
LIME1Q9H400 SNORA40.12-201ENST00000516329 111 ntBASIC2.4□□□□□ -2.03
LIME1Q9H400 RN7SKP219-201ENST00000516825 296 ntBASIC2.4□□□□□ -2.03
LIME1Q9H400 RNA5SP503-201ENST00000517047 117 ntBASIC2.4□□□□□ -2.03
LIME1Q9H400 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.4□□□□□ -2.03
LIME1Q9H400 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.4□□□□□ -2.03
LIME1Q9H400 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.4□□□□□ -2.03
LIME1Q9H400 AC007536.1-201ENST00000533382 349 ntBASIC2.4□□□□□ -2.03
LIME1Q9H400 MIR4524B-201ENST00000581569 115 ntBASIC2.4□□□□□ -2.03
LIME1Q9H400 AC008752.3-201ENST00000588113 712 ntBASIC2.4□□□□□ -2.03
LIME1Q9H400 AC023043.3-201ENST00000593113 385 ntBASIC2.4□□□□□ -2.03
LIME1Q9H400 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC2.4□□□□□ -2.03
LIME1Q9H400 AC126118.1-201ENST00000607744 628 ntBASIC2.4□□□□□ -2.03
LIME1Q9H400 AC002064.3-201ENST00000623448 346 ntBASIC2.4□□□□□ -2.03
LIME1Q9H400 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC2.4□□□□□ -2.03
LIME1Q9H400 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
LIME1Q9H400 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
LIME1Q9H400 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.4□□□□□ -2.03
LIME1Q9H400 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.4□□□□□ -2.03
LIME1Q9H400 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
LIME1Q9H400 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
LIME1Q9H400 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC2.39□□□□□ -2.03
LIME1Q9H400 MTND4P35-201ENST00000604257 1375 ntBASIC2.39□□□□□ -2.03
LIME1Q9H400 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.39□□□□□ -2.03
LIME1Q9H400 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.39□□□□□ -2.03
LIME1Q9H400 RNU6-166P-201ENST00000384371 107 ntBASIC2.39□□□□□ -2.03
LIME1Q9H400 MIR512-1-201ENST00000384913 84 ntBASIC2.39□□□□□ -2.03
LIME1Q9H400 RNU6-1158P-201ENST00000391167 107 ntBASIC2.39□□□□□ -2.03
LIME1Q9H400 MTCO3P40-201ENST00000392516 676 ntBASIC2.39□□□□□ -2.03
LIME1Q9H400 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.39□□□□□ -2.03
LIME1Q9H400 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC2.39□□□□□ -2.03
LIME1Q9H400 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC2.39□□□□□ -2.03
LIME1Q9H400 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.39□□□□□ -2.03
LIME1Q9H400 TIMM9P3-201ENST00000428659 274 ntBASIC2.39□□□□□ -2.03
LIME1Q9H400 HMGN2P10-201ENST00000448085 265 ntBASIC2.39□□□□□ -2.03
LIME1Q9H400 NDUFB1P2-201ENST00000449477 176 ntBASIC2.39□□□□□ -2.03
LIME1Q9H400 AL118520.1-201ENST00000450770 291 ntBASIC2.39□□□□□ -2.03
LIME1Q9H400 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.39□□□□□ -2.03
LIME1Q9H400 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC2.39□□□□□ -2.03
LIME1Q9H400 RPS3P1-201ENST00000456781 192 ntBASIC2.39□□□□□ -2.03
LIME1Q9H400 AC019235.1-201ENST00000503847 207 ntBASIC2.39□□□□□ -2.03
LIME1Q9H400 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC2.39□□□□□ -2.03
LIME1Q9H400 RNU6-1183P-201ENST00000517054 60 ntBASIC2.39□□□□□ -2.03
LIME1Q9H400 SNORA31.19-201ENST00000517079 126 ntBASIC2.39□□□□□ -2.03
LIME1Q9H400 AC025755.1-201ENST00000521306 278 ntBASIC2.39□□□□□ -2.03
LIME1Q9H400 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
LIME1Q9H400 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
LIME1Q9H400 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC2.39□□□□□ -2.03
LIME1Q9H400 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC2.39□□□□□ -2.03
LIME1Q9H400 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC2.39□□□□□ -2.03
LIME1Q9H400 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC2.39□□□□□ -2.03
LIME1Q9H400 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC2.39□□□□□ -2.03
LIME1Q9H400 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC2.39□□□□□ -2.03
LIME1Q9H400 MIR548AC-201ENST00000585049 88 ntBASIC2.39□□□□□ -2.03
LIME1Q9H400 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.39□□□□□ -2.03
LIME1Q9H400 BNIP3P30-201ENST00000601184 574 ntBASIC2.39□□□□□ -2.03
LIME1Q9H400 AC005046.1-201ENST00000608515 625 ntBASIC2.39□□□□□ -2.03
LIME1Q9H400 AC024940.5-201ENST00000622889 474 ntBASIC2.39□□□□□ -2.03
LIME1Q9H400 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC2.39□□□□□ -2.03
LIME1Q9H400 MIR6863-201ENST00000636112 90 ntBASIC2.39□□□□□ -2.03
LIME1Q9H400 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.39□□□□□ -2.03
LIME1Q9H400 AL161431.1-201ENST00000618966 4205 ntBASIC2.39□□□□□ -2.03
LIME1Q9H400 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.38□□□□□ -2.03
LIME1Q9H400 AC099654.7-201ENST00000635788 2127 ntBASIC2.38□□□□□ -2.03
LIME1Q9H400 OR4G2P-201ENST00000328113 903 ntBASIC2.38□□□□□ -2.03
LIME1Q9H400 Y_RNA.3-201ENST00000362331 103 ntBASIC2.38□□□□□ -2.03
LIME1Q9H400 U8.2-201ENST00000363156 134 ntBASIC2.38□□□□□ -2.03
LIME1Q9H400 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
LIME1Q9H400 SNORA67.4-201ENST00000384688 142 ntBASIC2.38□□□□□ -2.03
LIME1Q9H400 MIR578-201ENST00000384828 96 ntBASIC2.38□□□□□ -2.03
LIME1Q9H400 MIR518D-201ENST00000385014 87 ntBASIC2.38□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms