Protein–RNA interactions for Protein: Q9H0I3

CCDC113, Coiled-coil domain-containing protein 113, humanhuman

Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC113Q9H0I3 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC113Q9H0I3 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC4.16□□□□□ -1.74
CCDC113Q9H0I3 RPL9P9-202ENST00000466501 579 ntBASIC4.16□□□□□ -1.74
CCDC113Q9H0I3 AC008571.1-201ENST00000467232 300 ntBASIC4.16□□□□□ -1.74
CCDC113Q9H0I3 AK3P2-201ENST00000507976 429 ntBASIC4.16□□□□□ -1.74
CCDC113Q9H0I3 RNA5SP164-201ENST00000516533 110 ntBASIC4.16□□□□□ -1.74
CCDC113Q9H0I3 SNORA67.7-201ENST00000516664 135 ntBASIC4.16□□□□□ -1.74
CCDC113Q9H0I3 AC010186.2-204ENST00000537668 439 ntBASIC4.16□□□□□ -1.74
CCDC113Q9H0I3 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC4.16□□□□□ -1.74
CCDC113Q9H0I3 ANP32BP3-201ENST00000559213 706 ntBASIC4.16□□□□□ -1.74
CCDC113Q9H0I3 MIR1254-2-201ENST00000579553 63 ntBASIC4.16□□□□□ -1.74
CCDC113Q9H0I3 MIR5187-201ENST00000583479 76 ntBASIC4.16□□□□□ -1.74
CCDC113Q9H0I3 AC004852.3-201ENST00000614131 326 ntBASIC4.16□□□□□ -1.74
CCDC113Q9H0I3 AC134503.1-201ENST00000633048 54 ntBASIC4.16□□□□□ -1.74
CCDC113Q9H0I3 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.16□□□□□ -1.74
CCDC113Q9H0I3 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
CCDC113Q9H0I3 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC4.16□□□□□ -1.74
CCDC113Q9H0I3 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC4.16□□□□□ -1.74
CCDC113Q9H0I3 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
CCDC113Q9H0I3 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.15□□□□□ -1.74
CCDC113Q9H0I3 Y_RNA.128-201ENST00000363391 112 ntBASIC4.15□□□□□ -1.75
CCDC113Q9H0I3 Y_RNA.473-201ENST00000384333 102 ntBASIC4.15□□□□□ -1.75
CCDC113Q9H0I3 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
CCDC113Q9H0I3 RN7SKP27-201ENST00000410684 333 ntBASIC4.15□□□□□ -1.75
CCDC113Q9H0I3 Y_RNA.646-201ENST00000410980 101 ntBASIC4.15□□□□□ -1.75
CCDC113Q9H0I3 RNU6-325P-201ENST00000411132 105 ntBASIC4.15□□□□□ -1.75
CCDC113Q9H0I3 AL159987.2-201ENST00000432754 307 ntBASIC4.15□□□□□ -1.75
CCDC113Q9H0I3 RPL23AP50-201ENST00000434149 455 ntBASIC4.15□□□□□ -1.75
CCDC113Q9H0I3 SSXP4-201ENST00000451349 245 ntBASIC4.15□□□□□ -1.75
CCDC113Q9H0I3 MTCO3P10-201ENST00000455912 772 ntBASIC4.15□□□□□ -1.75
CCDC113Q9H0I3 ELOCP24-201ENST00000456370 334 ntBASIC4.15□□□□□ -1.75
CCDC113Q9H0I3 SNORD5.1-201ENST00000458800 75 ntBASIC4.15□□□□□ -1.75
CCDC113Q9H0I3 RNU7-152P-201ENST00000458982 64 ntBASIC4.15□□□□□ -1.75
CCDC113Q9H0I3 RPL7P42-201ENST00000481005 679 ntBASIC4.15□□□□□ -1.75
CCDC113Q9H0I3 AC097473.1-201ENST00000508142 408 ntBASIC4.15□□□□□ -1.75
CCDC113Q9H0I3 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC4.15□□□□□ -1.75
CCDC113Q9H0I3 Y_RNA.670-201ENST00000516255 105 ntBASIC4.15□□□□□ -1.75
CCDC113Q9H0I3 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC4.15□□□□□ -1.75
CCDC113Q9H0I3 MIR3158-1-201ENST00000583596 81 ntBASIC4.15□□□□□ -1.75
CCDC113Q9H0I3 AL137849.1-201ENST00000604767 169 ntBASIC4.15□□□□□ -1.75
CCDC113Q9H0I3 AL080274.1-201ENST00000605565 220 ntBASIC4.15□□□□□ -1.75
CCDC113Q9H0I3 AL391261.4-201ENST00000616012 481 ntBASIC4.15□□□□□ -1.75
CCDC113Q9H0I3 AC006111.3-201ENST00000622137 383 ntBASIC4.15□□□□□ -1.75
CCDC113Q9H0I3 U6.98-201ENST00000637157 84 ntBASIC4.15□□□□□ -1.75
CCDC113Q9H0I3 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC4.15□□□□□ -1.75
CCDC113Q9H0I3 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
CCDC113Q9H0I3 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
CCDC113Q9H0I3 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC4.15□□□□□ -1.75
CCDC113Q9H0I3 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC4.15□□□□□ -1.75
CCDC113Q9H0I3 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
CCDC113Q9H0I3 MTND4P23-201ENST00000447723 1363 ntBASIC4.14□□□□□ -1.75
CCDC113Q9H0I3 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC113Q9H0I3 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC113Q9H0I3 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC113Q9H0I3 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC113Q9H0I3 RNA5SP295-201ENST00000362655 121 ntBASIC4.14□□□□□ -1.75
CCDC113Q9H0I3 EIF4EBP2P3-201ENST00000403144 334 ntBASIC4.14□□□□□ -1.75
CCDC113Q9H0I3 AL138878.1-201ENST00000405131 347 ntBASIC4.14□□□□□ -1.75
CCDC113Q9H0I3 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC4.14□□□□□ -1.75
CCDC113Q9H0I3 Z82205.1-201ENST00000428456 297 ntBASIC4.14□□□□□ -1.75
CCDC113Q9H0I3 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC4.14□□□□□ -1.75
CCDC113Q9H0I3 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC4.14□□□□□ -1.75
CCDC113Q9H0I3 U8.21-201ENST00000459536 136 ntBASIC4.14□□□□□ -1.75
CCDC113Q9H0I3 RPS29P20-201ENST00000489592 171 ntBASIC4.14□□□□□ -1.75
CCDC113Q9H0I3 ACA59.1-201ENST00000515966 143 ntBASIC4.14□□□□□ -1.75
CCDC113Q9H0I3 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC4.14□□□□□ -1.75
CCDC113Q9H0I3 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC113Q9H0I3 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC4.14□□□□□ -1.75
CCDC113Q9H0I3 TRAV32-201ENST00000553993 340 ntBASIC4.14□□□□□ -1.75
CCDC113Q9H0I3 AC103996.1-201ENST00000555468 102 ntBASIC4.14□□□□□ -1.75
CCDC113Q9H0I3 AC018889.1-201ENST00000605372 397 ntBASIC4.14□□□□□ -1.75
CCDC113Q9H0I3 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC113Q9H0I3 DLEU2_5.1-201ENST00000615567 84 ntBASIC4.14□□□□□ -1.75
CCDC113Q9H0I3 AC006133.1-201ENST00000617106 264 ntBASIC4.14□□□□□ -1.75
CCDC113Q9H0I3 AC098657.3-201ENST00000620434 263 ntBASIC4.14□□□□□ -1.75
CCDC113Q9H0I3 CR392039.5-201ENST00000623201 510 ntBASIC4.14□□□□□ -1.75
CCDC113Q9H0I3 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC4.14□□□□□ -1.75
CCDC113Q9H0I3 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC113Q9H0I3 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC113Q9H0I3 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC113Q9H0I3 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC113Q9H0I3 MTND5P19-201ENST00000424872 1794 ntBASIC4.14□□□□□ -1.75
CCDC113Q9H0I3 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC4.14□□□□□ -1.75
CCDC113Q9H0I3 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC113Q9H0I3 EFTUD1P2-201ENST00000514817 1603 ntBASIC4.13□□□□□ -1.75
CCDC113Q9H0I3 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
CCDC113Q9H0I3 RNU6ATAC34P-201ENST00000408879 121 ntBASIC4.13□□□□□ -1.75
CCDC113Q9H0I3 SYF2P2-201ENST00000417620 583 ntBASIC4.13□□□□□ -1.75
CCDC113Q9H0I3 RPL31P12-201ENST00000422587 358 ntBASIC4.13□□□□□ -1.75
CCDC113Q9H0I3 AC124916.1-201ENST00000444020 547 ntBASIC4.13□□□□□ -1.75
CCDC113Q9H0I3 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC4.13□□□□□ -1.75
CCDC113Q9H0I3 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC4.13□□□□□ -1.75
CCDC113Q9H0I3 RNU6-307P-201ENST00000516743 106 ntBASIC4.13□□□□□ -1.75
CCDC113Q9H0I3 AP004607.1-201ENST00000524456 203 ntBASIC4.13□□□□□ -1.75
CCDC113Q9H0I3 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC4.13□□□□□ -1.75
CCDC113Q9H0I3 MIR4273-201ENST00000582824 84 ntBASIC4.13□□□□□ -1.75
CCDC113Q9H0I3 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC4.13□□□□□ -1.75
CCDC113Q9H0I3 AC009314.1-201ENST00000603871 304 ntBASIC4.13□□□□□ -1.75
CCDC113Q9H0I3 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC4.13□□□□□ -1.75
CCDC113Q9H0I3 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 114 ms