Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC3.18□□□□□ -1.9
USP44Q9H0E7 Y_RNA.409-201ENST00000383990 98 ntBASIC3.18□□□□□ -1.9
USP44Q9H0E7 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
USP44Q9H0E7 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
USP44Q9H0E7 AC068050.1-201ENST00000394891 380 ntBASIC3.18□□□□□ -1.9
USP44Q9H0E7 RNU4-46P-201ENST00000410818 138 ntBASIC3.18□□□□□ -1.9
USP44Q9H0E7 BPY2DP-201ENST00000422208 265 ntBASIC3.18□□□□□ -1.9
USP44Q9H0E7 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
USP44Q9H0E7 AL160275.3-201ENST00000423876 471 ntBASIC3.18□□□□□ -1.9
USP44Q9H0E7 AL596276.1-201ENST00000434465 418 ntBASIC3.18□□□□□ -1.9
USP44Q9H0E7 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.18□□□□□ -1.9
USP44Q9H0E7 MTND1P18-201ENST00000448191 573 ntBASIC3.18□□□□□ -1.9
USP44Q9H0E7 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC3.18□□□□□ -1.9
USP44Q9H0E7 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC3.18□□□□□ -1.9
USP44Q9H0E7 RPL36AP51-201ENST00000487216 318 ntBASIC3.18□□□□□ -1.9
USP44Q9H0E7 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC3.18□□□□□ -1.9
USP44Q9H0E7 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC3.18□□□□□ -1.9
USP44Q9H0E7 AC104806.1-201ENST00000508720 308 ntBASIC3.18□□□□□ -1.9
USP44Q9H0E7 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC3.18□□□□□ -1.9
USP44Q9H0E7 RN7SKP24-201ENST00000515888 284 ntBASIC3.18□□□□□ -1.9
USP44Q9H0E7 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC3.18□□□□□ -1.9
USP44Q9H0E7 AC109329.2-201ENST00000519658 482 ntBASIC3.18□□□□□ -1.9
USP44Q9H0E7 CKS1BP7-201ENST00000522230 235 ntBASIC3.18□□□□□ -1.9
USP44Q9H0E7 AL512310.1-201ENST00000548639 172 ntBASIC3.18□□□□□ -1.9
USP44Q9H0E7 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC3.18□□□□□ -1.9
USP44Q9H0E7 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC3.18□□□□□ -1.9
USP44Q9H0E7 AC025281.1-201ENST00000567026 265 ntBASIC3.18□□□□□ -1.9
USP44Q9H0E7 RPL23AP78-201ENST00000599928 470 ntBASIC3.18□□□□□ -1.9
USP44Q9H0E7 AC010620.2-201ENST00000600135 313 ntBASIC3.18□□□□□ -1.9
USP44Q9H0E7 AC008945.2-201ENST00000606056 604 ntBASIC3.18□□□□□ -1.9
USP44Q9H0E7 AC008536.2-201ENST00000607284 349 ntBASIC3.18□□□□□ -1.9
USP44Q9H0E7 AL359880.1-201ENST00000621879 266 ntBASIC3.18□□□□□ -1.9
USP44Q9H0E7 AC011155.2-201ENST00000623202 216 ntBASIC3.18□□□□□ -1.9
USP44Q9H0E7 MIR6733-201ENST00000635723 61 ntBASIC3.18□□□□□ -1.9
USP44Q9H0E7 AC068137.3-201ENST00000639191 341 ntBASIC3.18□□□□□ -1.9
USP44Q9H0E7 AC073869.6-201ENST00000640656 341 ntBASIC3.18□□□□□ -1.9
USP44Q9H0E7 AC027514.1-201ENST00000588561 1603 ntBASIC3.18□□□□□ -1.9
USP44Q9H0E7 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
USP44Q9H0E7 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.18□□□□□ -1.9
USP44Q9H0E7 AC009487.2-201ENST00000420969 6821 ntBASIC3.17□□□□□ -1.9
USP44Q9H0E7 MIR449A-201ENST00000362113 91 ntBASIC3.17□□□□□ -1.9
USP44Q9H0E7 RNU6-1287P-201ENST00000362914 107 ntBASIC3.17□□□□□ -1.9
USP44Q9H0E7 SNORA62.1-201ENST00000364287 154 ntBASIC3.17□□□□□ -1.9
USP44Q9H0E7 RNU6-517P-201ENST00000384362 110 ntBASIC3.17□□□□□ -1.9
USP44Q9H0E7 Y_RNA.500-201ENST00000384466 111 ntBASIC3.17□□□□□ -1.9
USP44Q9H0E7 RNU6-1060P-201ENST00000384664 107 ntBASIC3.17□□□□□ -1.9
USP44Q9H0E7 Y_RNA.576-201ENST00000384781 102 ntBASIC3.17□□□□□ -1.9
USP44Q9H0E7 USP9YP6-201ENST00000413550 854 ntBASIC3.17□□□□□ -1.9
USP44Q9H0E7 OR6C66P-201ENST00000414917 930 ntBASIC3.17□□□□□ -1.9
USP44Q9H0E7 AC092809.3-201ENST00000415453 231 ntBASIC3.17□□□□□ -1.9
USP44Q9H0E7 AC096649.2-201ENST00000416186 393 ntBASIC3.17□□□□□ -1.9
USP44Q9H0E7 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC3.17□□□□□ -1.9
USP44Q9H0E7 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC3.17□□□□□ -1.9
USP44Q9H0E7 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
USP44Q9H0E7 MTND1P4-201ENST00000435196 415 ntBASIC3.17□□□□□ -1.9
USP44Q9H0E7 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC3.17□□□□□ -1.9
USP44Q9H0E7 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC3.17□□□□□ -1.9
USP44Q9H0E7 NDUFB1P2-201ENST00000449477 176 ntBASIC3.17□□□□□ -1.9
USP44Q9H0E7 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
USP44Q9H0E7 AC233702.1-201ENST00000482905 502 ntBASIC3.17□□□□□ -1.9
USP44Q9H0E7 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC3.17□□□□□ -1.9
USP44Q9H0E7 AC104136.1-201ENST00000512969 394 ntBASIC3.17□□□□□ -1.9
USP44Q9H0E7 AC114781.4-201ENST00000513707 639 ntBASIC3.17□□□□□ -1.9
USP44Q9H0E7 LRRC34P2-201ENST00000514850 553 ntBASIC3.17□□□□□ -1.9
USP44Q9H0E7 RNA5SP385-201ENST00000515947 110 ntBASIC3.17□□□□□ -1.9
USP44Q9H0E7 RNU6-314P-201ENST00000516574 104 ntBASIC3.17□□□□□ -1.9
USP44Q9H0E7 AP001893.2-201ENST00000526949 202 ntBASIC3.17□□□□□ -1.9
USP44Q9H0E7 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.17□□□□□ -1.9
USP44Q9H0E7 ZNF519P2-201ENST00000557032 169 ntBASIC3.17□□□□□ -1.9
USP44Q9H0E7 MIR3941-201ENST00000582572 103 ntBASIC3.17□□□□□ -1.9
USP44Q9H0E7 AC023043.3-201ENST00000593113 385 ntBASIC3.17□□□□□ -1.9
USP44Q9H0E7 AP001330.5-201ENST00000607176 411 ntBASIC3.17□□□□□ -1.9
USP44Q9H0E7 U6.42-201ENST00000618440 107 ntBASIC3.17□□□□□ -1.9
USP44Q9H0E7 AC024940.5-201ENST00000622889 474 ntBASIC3.17□□□□□ -1.9
USP44Q9H0E7 ZNF519P1-201ENST00000449011 1626 ntBASIC3.17□□□□□ -1.9
USP44Q9H0E7 FAM35CP-201ENST00000554755 2470 ntBASIC3.17□□□□□ -1.9
USP44Q9H0E7 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.17□□□□□ -1.9
USP44Q9H0E7 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.17□□□□□ -1.9
USP44Q9H0E7 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC3.16□□□□□ -1.9
USP44Q9H0E7 AL139276.1-201ENST00000311910 1001 ntBASIC3.16□□□□□ -1.9
USP44Q9H0E7 MIR412-201ENST00000362142 91 ntBASIC3.16□□□□□ -1.9
USP44Q9H0E7 RNU6-1322P-201ENST00000364309 107 ntBASIC3.16□□□□□ -1.9
USP44Q9H0E7 EQTN-201ENST00000380031 725 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
USP44Q9H0E7 XGY1-201ENST00000381172 446 ntBASIC3.16□□□□□ -1.9
USP44Q9H0E7 CD24P4-201ENST00000382840 243 ntBASIC3.16□□□□□ -1.9
USP44Q9H0E7 Y_RNA.554-201ENST00000384672 102 ntBASIC3.16□□□□□ -1.9
USP44Q9H0E7 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
USP44Q9H0E7 RNU6-780P-201ENST00000391030 104 ntBASIC3.16□□□□□ -1.9
USP44Q9H0E7 RNU2-9P-201ENST00000410194 145 ntBASIC3.16□□□□□ -1.9
USP44Q9H0E7 RNA5SP111-201ENST00000411386 101 ntBASIC3.16□□□□□ -1.9
USP44Q9H0E7 AL353729.1-201ENST00000425044 720 ntBASIC3.16□□□□□ -1.9
USP44Q9H0E7 RPS3AP44-201ENST00000425466 790 ntBASIC3.16□□□□□ -1.9
USP44Q9H0E7 SKA2P1-201ENST00000425592 390 ntBASIC3.16□□□□□ -1.9
USP44Q9H0E7 AC104058.1-201ENST00000448028 297 ntBASIC3.16□□□□□ -1.9
USP44Q9H0E7 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC3.16□□□□□ -1.9
USP44Q9H0E7 GSTA11P-201ENST00000452866 669 ntBASIC3.16□□□□□ -1.9
USP44Q9H0E7 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC3.16□□□□□ -1.9
USP44Q9H0E7 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC3.16□□□□□ -1.9
USP44Q9H0E7 SRI-210ENST00000490437 570 ntTSL 2 BASIC3.16□□□□□ -1.9
USP44Q9H0E7 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 96.2 ms