Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.26□□□□□ -1.89
HERPUD2Q9BSE4 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 AL359854.1-201ENST00000614203 1594 ntBASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 RNU6-461P-201ENST00000364195 107 ntBASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 CALM2P3-201ENST00000400429 449 ntBASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 CIR1P3-201ENST00000405137 479 ntBASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 RPL32P35-201ENST00000415214 394 ntBASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 AL365400.1-201ENST00000431854 640 ntBASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 AC004383.1-201ENST00000438135 289 ntBASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 MTCO2P3-201ENST00000442543 421 ntBASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 FDX1P2-201ENST00000450769 375 ntBASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 CACYBPP2-201ENST00000453625 678 ntBASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 AC083798.1-201ENST00000472671 131 ntBASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 RN7SL20P-201ENST00000488827 297 ntBASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 MTCO3P9-201ENST00000506989 781 ntBASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 RNU4ATAC8P-201ENST00000516196 109 ntBASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 MIR3117-201ENST00000584034 78 ntBASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 AC007621.1-201ENST00000604544 437 ntBASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 AL591516.1-201ENST00000611326 274 ntBASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 AC010378.1-201ENST00000619270 362 ntBASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 AC022418.1-201ENST00000624118 445 ntBASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 MIR3651-201ENST00000630427 90 ntBASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
HERPUD2Q9BSE4 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.24□□□□□ -1.89
HERPUD2Q9BSE4 AL109809.4-201ENST00000603520 2185 ntBASIC3.24□□□□□ -1.89
HERPUD2Q9BSE4 AC073325.2-201ENST00000339545 159 ntBASIC3.24□□□□□ -1.89
HERPUD2Q9BSE4 Y_RNA.41-201ENST00000362646 102 ntBASIC3.24□□□□□ -1.89
HERPUD2Q9BSE4 MIR483-201ENST00000385070 76 ntBASIC3.24□□□□□ -1.89
HERPUD2Q9BSE4 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC3.24□□□□□ -1.89
HERPUD2Q9BSE4 AC092427.1-202ENST00000430569 476 ntBASIC3.24□□□□□ -1.89
HERPUD2Q9BSE4 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC3.24□□□□□ -1.89
HERPUD2Q9BSE4 CALM1P1-201ENST00000442082 433 ntBASIC3.24□□□□□ -1.89
HERPUD2Q9BSE4 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
HERPUD2Q9BSE4 RNU2-69P-201ENST00000516061 100 ntBASIC3.24□□□□□ -1.89
HERPUD2Q9BSE4 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.24□□□□□ -1.89
HERPUD2Q9BSE4 AL512360.1-201ENST00000555346 234 ntBASIC3.24□□□□□ -1.89
HERPUD2Q9BSE4 MIR5680-201ENST00000577577 84 ntBASIC3.24□□□□□ -1.89
HERPUD2Q9BSE4 MIR3616-201ENST00000584070 92 ntBASIC3.24□□□□□ -1.89
HERPUD2Q9BSE4 AC008121.1-201ENST00000603244 268 ntBASIC3.24□□□□□ -1.89
HERPUD2Q9BSE4 MIR7112-201ENST00000616126 65 ntBASIC3.24□□□□□ -1.89
HERPUD2Q9BSE4 MIR3529-201ENST00000637713 78 ntBASIC3.24□□□□□ -1.89
HERPUD2Q9BSE4 AL354685.2-201ENST00000448218 1447 ntBASIC3.24□□□□□ -1.89
HERPUD2Q9BSE4 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.24□□□□□ -1.89
HERPUD2Q9BSE4 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 Y_RNA.324-201ENST00000365165 102 ntBASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 SNORA69-201ENST00000383895 132 ntBASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 Y_RNA.480-201ENST00000384364 102 ntBASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 RNU2-3P-201ENST00000410144 191 ntBASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 RNU4-47P-201ENST00000410876 114 ntBASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 CYCSP33-201ENST00000414485 327 ntBASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 AC245054.2-201ENST00000415639 319 ntBASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 MED28P2-201ENST00000475771 317 ntBASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 RPL36AP48-201ENST00000485521 314 ntBASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 RNU5B-3P-201ENST00000516601 115 ntBASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 Y_RNA.693-201ENST00000516641 110 ntBASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 RPL7P20-201ENST00000520308 745 ntBASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 MDM2-233ENST00000545204 398 ntTSL 5 BASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 MIR3199-1-201ENST00000582434 88 ntBASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 MIR3941-201ENST00000582572 103 ntBASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 YPEL5P2-201ENST00000605553 359 ntBASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 U2.17-201ENST00000611454 95 ntBASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 uc_338.34-201ENST00000617467 174 ntBASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 MIR7157-201ENST00000635801 60 ntBASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
HERPUD2Q9BSE4 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms