Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC2.57□□□□□ -2
NKX3-1Q99801 HMGN2P30-201ENST00000423237 256 ntBASIC2.57□□□□□ -2
NKX3-1Q99801 AL353729.1-201ENST00000425044 720 ntBASIC2.57□□□□□ -2
NKX3-1Q99801 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.57□□□□□ -2
NKX3-1Q99801 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC2.57□□□□□ -2
NKX3-1Q99801 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC2.57□□□□□ -2
NKX3-1Q99801 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.57□□□□□ -2
NKX3-1Q99801 RPS15AP27-201ENST00000449183 343 ntBASIC2.57□□□□□ -2
NKX3-1Q99801 AL583843.1-201ENST00000456070 346 ntBASIC2.57□□□□□ -2
NKX3-1Q99801 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC2.57□□□□□ -2
NKX3-1Q99801 RPL26P9-201ENST00000457466 433 ntBASIC2.57□□□□□ -2
NKX3-1Q99801 RNU6-333P-201ENST00000459117 107 ntBASIC2.57□□□□□ -2
NKX3-1Q99801 AC109925.1-201ENST00000478069 331 ntBASIC2.57□□□□□ -2
NKX3-1Q99801 RPS29P2-201ENST00000479278 136 ntBASIC2.57□□□□□ -2
NKX3-1Q99801 MTAPP1-201ENST00000489154 819 ntBASIC2.57□□□□□ -2
NKX3-1Q99801 AC069439.1-201ENST00000494739 167 ntBASIC2.57□□□□□ -2
NKX3-1Q99801 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC2.57□□□□□ -2
NKX3-1Q99801 AF213884.2-201ENST00000510417 903 ntBASIC2.57□□□□□ -2
NKX3-1Q99801 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC2.57□□□□□ -2
NKX3-1Q99801 RNU1-86P-201ENST00000516108 154 ntBASIC2.57□□□□□ -2
NKX3-1Q99801 RNA5SP341-201ENST00000516261 117 ntBASIC2.57□□□□□ -2
NKX3-1Q99801 RNU1-107P-201ENST00000516617 154 ntBASIC2.57□□□□□ -2
NKX3-1Q99801 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC2.57□□□□□ -2
NKX3-1Q99801 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.57□□□□□ -2
NKX3-1Q99801 PSMA2P1-201ENST00000526365 646 ntBASIC2.57□□□□□ -2
NKX3-1Q99801 AL137161.1-201ENST00000532231 390 ntBASIC2.57□□□□□ -2
NKX3-1Q99801 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.57□□□□□ -2
NKX3-1Q99801 CYCSP39-201ENST00000565821 309 ntBASIC2.57□□□□□ -2
NKX3-1Q99801 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC2.57□□□□□ -2
NKX3-1Q99801 AC068944.2-201ENST00000610373 403 ntBASIC2.57□□□□□ -2
NKX3-1Q99801 RMST_3.1-201ENST00000611651 109 ntBASIC2.57□□□□□ -2
NKX3-1Q99801 U6atac.1-201ENST00000616025 117 ntBASIC2.57□□□□□ -2
NKX3-1Q99801 uc_338.11-201ENST00000619132 160 ntBASIC2.57□□□□□ -2
NKX3-1Q99801 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC2.57□□□□□ -2
NKX3-1Q99801 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC2.57□□□□□ -2
NKX3-1Q99801 FER-210ENST00000628534 558 ntTSL 5 BASIC2.57□□□□□ -2
NKX3-1Q99801 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC2.57□□□□□ -2
NKX3-1Q99801 U6.99-201ENST00000637524 83 ntBASIC2.57□□□□□ -2
NKX3-1Q99801 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC2.57□□□□□ -2
NKX3-1Q99801 AC010680.1-201ENST00000590024 3590 ntBASIC2.57□□□□□ -2
NKX3-1Q99801 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
NKX3-1Q99801 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC2.56□□□□□ -2
NKX3-1Q99801 AC099654.7-201ENST00000635788 2127 ntBASIC2.56□□□□□ -2
NKX3-1Q99801 MIR422A-201ENST00000362286 90 ntBASIC2.56□□□□□ -2
NKX3-1Q99801 RNU6-451P-201ENST00000362921 107 ntBASIC2.56□□□□□ -2
NKX3-1Q99801 RNY3P3-201ENST00000363816 102 ntBASIC2.56□□□□□ -2
NKX3-1Q99801 RNU6-384P-201ENST00000364900 104 ntBASIC2.56□□□□□ -2
NKX3-1Q99801 Y_RNA.295-201ENST00000364918 102 ntBASIC2.56□□□□□ -2
NKX3-1Q99801 RNU6-166P-201ENST00000384371 107 ntBASIC2.56□□□□□ -2
NKX3-1Q99801 RNU6-45P-201ENST00000384471 107 ntBASIC2.56□□□□□ -2
NKX3-1Q99801 SNORD37.1-201ENST00000390968 65 ntBASIC2.56□□□□□ -2
NKX3-1Q99801 SNORA40C-201ENST00000391285 128 ntBASIC2.56□□□□□ -2
NKX3-1Q99801 AL606923.1-201ENST00000406616 190 ntBASIC2.56□□□□□ -2
NKX3-1Q99801 RNU4-47P-201ENST00000410876 114 ntBASIC2.56□□□□□ -2
NKX3-1Q99801 ATG3P1-201ENST00000419507 911 ntBASIC2.56□□□□□ -2
NKX3-1Q99801 BPY2DP-201ENST00000422208 265 ntBASIC2.56□□□□□ -2
NKX3-1Q99801 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC2.56□□□□□ -2
NKX3-1Q99801 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC2.56□□□□□ -2
NKX3-1Q99801 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC2.56□□□□□ -2
NKX3-1Q99801 AC007560.1-201ENST00000426912 237 ntBASIC2.56□□□□□ -2
NKX3-1Q99801 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC2.56□□□□□ -2
NKX3-1Q99801 AL139415.2-201ENST00000431968 163 ntBASIC2.56□□□□□ -2
NKX3-1Q99801 SEPT14P3-201ENST00000439401 183 ntBASIC2.56□□□□□ -2
NKX3-1Q99801 AC092473.1-201ENST00000441098 221 ntBASIC2.56□□□□□ -2
NKX3-1Q99801 BRK1P2-201ENST00000442875 223 ntBASIC2.56□□□□□ -2
NKX3-1Q99801 AL732372.2-207ENST00000445840 183 ntBASIC2.56□□□□□ -2
NKX3-1Q99801 MTND3P16-201ENST00000452205 344 ntBASIC2.56□□□□□ -2
NKX3-1Q99801 SEPT14P2-201ENST00000453405 183 ntBASIC2.56□□□□□ -2
NKX3-1Q99801 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC2.56□□□□□ -2
NKX3-1Q99801 AC092798.1-201ENST00000458542 409 ntBASIC2.56□□□□□ -2
NKX3-1Q99801 SEPT14P4-201ENST00000513445 186 ntBASIC2.56□□□□□ -2
NKX3-1Q99801 RNU6-1183P-201ENST00000517054 60 ntBASIC2.56□□□□□ -2
NKX3-1Q99801 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
NKX3-1Q99801 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC2.56□□□□□ -2
NKX3-1Q99801 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC2.56□□□□□ -2
NKX3-1Q99801 FO082796.1-201ENST00000523795 183 ntBASIC2.56□□□□□ -2
NKX3-1Q99801 AP000462.2-203ENST00000540545 715 ntTSL 5 BASIC2.56□□□□□ -2
NKX3-1Q99801 AC010525.2-201ENST00000590920 195 ntBASIC2.56□□□□□ -2
NKX3-1Q99801 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC2.56□□□□□ -2
NKX3-1Q99801 NUTF2P8-201ENST00000604593 363 ntBASIC2.56□□□□□ -2
NKX3-1Q99801 AL161629.2-201ENST00000615347 275 ntBASIC2.56□□□□□ -2
NKX3-1Q99801 AP003400.5-201ENST00000624827 617 ntBASIC2.56□□□□□ -2
NKX3-1Q99801 AP003122.5-201ENST00000527668 3766 ntBASIC2.56□□□□□ -2
NKX3-1Q99801 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.55□□□□□ -2
NKX3-1Q99801 RPL9P7-201ENST00000330965 580 ntBASIC2.55□□□□□ -2
NKX3-1Q99801 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
NKX3-1Q99801 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
NKX3-1Q99801 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC2.55□□□□□ -2
NKX3-1Q99801 Y_RNA.248-201ENST00000364501 109 ntBASIC2.55□□□□□ -2
NKX3-1Q99801 RNU6-395P-201ENST00000365662 106 ntBASIC2.55□□□□□ -2
NKX3-1Q99801 RNU6-1027P-201ENST00000383998 107 ntBASIC2.55□□□□□ -2
NKX3-1Q99801 SNORA7.4-201ENST00000384249 137 ntBASIC2.55□□□□□ -2
NKX3-1Q99801 RNU6-393P-201ENST00000384475 107 ntBASIC2.55□□□□□ -2
NKX3-1Q99801 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC2.55□□□□□ -2
NKX3-1Q99801 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.55□□□□□ -2
NKX3-1Q99801 AL356057.2-201ENST00000403318 432 ntBASIC2.55□□□□□ -2
NKX3-1Q99801 MIR1289-1-201ENST00000408836 144 ntBASIC2.55□□□□□ -2
NKX3-1Q99801 AC096664.2-201ENST00000411843 406 ntBASIC2.55□□□□□ -2
NKX3-1Q99801 OR9R1P-201ENST00000412200 877 ntBASIC2.55□□□□□ -2
NKX3-1Q99801 AL451074.5-201ENST00000415894 435 ntBASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 169.1 ms