Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 RPS15AP9-201ENST00000439856 381 ntBASIC1.96□□□□□ -2.1
CCDC54Q8NEL0 AC025750.2-201ENST00000442609 450 ntBASIC1.96□□□□□ -2.1
CCDC54Q8NEL0 OSTCP8-201ENST00000445117 448 ntBASIC1.96□□□□□ -2.1
CCDC54Q8NEL0 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC1.96□□□□□ -2.1
CCDC54Q8NEL0 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC1.96□□□□□ -2.1
CCDC54Q8NEL0 LAMTOR3P2-201ENST00000504479 232 ntBASIC1.96□□□□□ -2.1
CCDC54Q8NEL0 AC023141.11-201ENST00000508864 202 ntBASIC1.96□□□□□ -2.1
CCDC54Q8NEL0 RNU7-51P-201ENST00000516560 62 ntBASIC1.96□□□□□ -2.1
CCDC54Q8NEL0 CYCSP26-201ENST00000534107 320 ntBASIC1.96□□□□□ -2.1
CCDC54Q8NEL0 AL157871.3-201ENST00000557231 293 ntBASIC1.96□□□□□ -2.1
CCDC54Q8NEL0 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC1.96□□□□□ -2.1
CCDC54Q8NEL0 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC1.96□□□□□ -2.1
CCDC54Q8NEL0 AF131215.7-201ENST00000602443 707 ntBASIC1.96□□□□□ -2.1
CCDC54Q8NEL0 AC090578.1-201ENST00000604955 591 ntBASIC1.96□□□□□ -2.1
CCDC54Q8NEL0 AC012360.2-201ENST00000609349 391 ntBASIC1.96□□□□□ -2.1
CCDC54Q8NEL0 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC1.96□□□□□ -2.1
CCDC54Q8NEL0 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
CCDC54Q8NEL0 AC093648.1-201ENST00000623546 606 ntBASIC1.96□□□□□ -2.1
CCDC54Q8NEL0 AC006386.2-201ENST00000624491 75 ntBASIC1.96□□□□□ -2.1
CCDC54Q8NEL0 AC012005.1-201ENST00000624575 75 ntBASIC1.96□□□□□ -2.1
CCDC54Q8NEL0 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC1.96□□□□□ -2.1
CCDC54Q8NEL0 ZBED5-201ENST00000413761 2512 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
CCDC54Q8NEL0 AC010329.5-201ENST00000623497 2174 ntBASIC1.96□□□□□ -2.1
CCDC54Q8NEL0 HSPA8P4-201ENST00000511877 1920 ntBASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 KPNA2P1-201ENST00000458289 1591 ntBASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 Y_RNA.333-201ENST00000365274 102 ntBASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 RNU6-190P-201ENST00000384154 102 ntBASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 MIR578-201ENST00000384828 96 ntBASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 AL445529.1-201ENST00000398713 389 ntBASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 RNU6-1025P-201ENST00000410629 104 ntBASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 MTND3P17-201ENST00000416968 344 ntBASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 AC016831.2-201ENST00000417179 352 ntBASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 AL353706.1-201ENST00000436728 494 ntBASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 SNRPGP9-201ENST00000456025 225 ntBASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 AC011005.2-201ENST00000487324 359 ntBASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 RN7SL636P-201ENST00000497504 294 ntBASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 MTND4P2-201ENST00000507767 1203 ntBASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 RNU4-29P-201ENST00000515943 174 ntBASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 RNU6-677P-201ENST00000516914 101 ntBASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 MRPS36P5-201ENST00000551909 298 ntBASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 EIF4BP1-201ENST00000554881 351 ntBASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 AC007151.1-201ENST00000572774 483 ntBASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 AC008521.1-201ENST00000587471 187 ntBASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 AC002984.1-201ENST00000591692 448 ntBASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 CLIC4P2-201ENST00000601934 717 ntBASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 DEFB131E-202ENST00000602581 683 ntBASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 Z94722.1-201ENST00000604328 474 ntBASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 AL022154.1-201ENST00000604698 785 ntBASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 AC098657.3-201ENST00000620434 263 ntBASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 U6.99-201ENST00000637524 83 ntBASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
CCDC54Q8NEL0 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 ADAM3A-203ENST00000461344 2157 ntBASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 SNORA16B-201ENST00000364674 135 ntBASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 RNY4P34-201ENST00000364779 95 ntBASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 RNU6-384P-201ENST00000364900 104 ntBASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 SNORA67.4-201ENST00000384688 142 ntBASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 MIR17-201ENST00000385012 84 ntBASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 SNORA40.3-201ENST00000390964 122 ntBASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 SNORA46.1-201ENST00000391069 153 ntBASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 AL049545.1-201ENST00000401856 572 ntBASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 ELOCP4-201ENST00000420090 333 ntBASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 AC000111.3-201ENST00000433478 193 ntBASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 AC119618.1-201ENST00000434191 222 ntBASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 AL360271.2-201ENST00000447710 161 ntBASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 RNU6-953P-201ENST00000459154 107 ntBASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 SNORD42A-201ENST00000459584 64 ntBASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 AP001324.2-201ENST00000461163 319 ntBASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 DYNLL1P5-201ENST00000467158 270 ntBASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 RPL7P43-201ENST00000478876 753 ntBASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 AC108078.2-201ENST00000510750 236 ntBASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 AC112206.3-201ENST00000514578 389 ntBASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 RNU6-123P-201ENST00000516163 102 ntBASIC1.94□□□□□ -2.1
CCDC54Q8NEL0 RNU7-193P-201ENST00000516723 65 ntBASIC1.94□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 131 ms