Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 MIR7844-201ENST00000616161 122 ntBASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 AL031601.2-202ENST00000622650 282 ntBASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 AL356266.1-201ENST00000623311 483 ntBASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 ZNF658B-202ENST00000615961 3375 ntBASIC2.3□□□□□ -2.04
ZNF540Q8NDQ6 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.29□□□□□ -2.04
ZNF540Q8NDQ6 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
ZNF540Q8NDQ6 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC2.29□□□□□ -2.04
ZNF540Q8NDQ6 MTND4P16-201ENST00000466108 1367 ntBASIC2.29□□□□□ -2.04
ZNF540Q8NDQ6 DLEU2_6.3-201ENST00000340052 136 ntBASIC2.29□□□□□ -2.04
ZNF540Q8NDQ6 RNU1-112P-201ENST00000364401 164 ntBASIC2.29□□□□□ -2.04
ZNF540Q8NDQ6 Y_RNA.318-201ENST00000365131 97 ntBASIC2.29□□□□□ -2.04
ZNF540Q8NDQ6 MIR34A-201ENST00000385130 110 ntBASIC2.29□□□□□ -2.04
ZNF540Q8NDQ6 MIR561-201ENST00000385216 97 ntBASIC2.29□□□□□ -2.04
ZNF540Q8NDQ6 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC2.29□□□□□ -2.04
ZNF540Q8NDQ6 AL160275.3-201ENST00000423876 471 ntBASIC2.29□□□□□ -2.04
ZNF540Q8NDQ6 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC2.29□□□□□ -2.04
ZNF540Q8NDQ6 AL591704.1-201ENST00000432574 275 ntBASIC2.29□□□□□ -2.04
ZNF540Q8NDQ6 AC098826.1-201ENST00000433943 471 ntBASIC2.29□□□□□ -2.04
ZNF540Q8NDQ6 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC2.29□□□□□ -2.04
ZNF540Q8NDQ6 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC2.29□□□□□ -2.04
ZNF540Q8NDQ6 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC2.29□□□□□ -2.04
ZNF540Q8NDQ6 AL078601.1-201ENST00000444542 271 ntBASIC2.29□□□□□ -2.04
ZNF540Q8NDQ6 AL513328.1-201ENST00000446460 224 ntBASIC2.29□□□□□ -2.04
ZNF540Q8NDQ6 FABP5P13-201ENST00000452144 328 ntBASIC2.29□□□□□ -2.04
ZNF540Q8NDQ6 KATNBL1P6-201ENST00000453433 915 ntBASIC2.29□□□□□ -2.04
ZNF540Q8NDQ6 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC2.29□□□□□ -2.04
ZNF540Q8NDQ6 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC2.29□□□□□ -2.04
ZNF540Q8NDQ6 RNU6-678P-201ENST00000516832 109 ntBASIC2.29□□□□□ -2.04
ZNF540Q8NDQ6 AC106038.2-201ENST00000520706 568 ntBASIC2.29□□□□□ -2.04
ZNF540Q8NDQ6 AC012435.1-202ENST00000568772 240 ntBASIC2.29□□□□□ -2.04
ZNF540Q8NDQ6 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC2.29□□□□□ -2.04
ZNF540Q8NDQ6 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC2.29□□□□□ -2.04
ZNF540Q8NDQ6 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.29□□□□□ -2.04
ZNF540Q8NDQ6 AC105129.3-201ENST00000605455 485 ntBASIC2.29□□□□□ -2.04
ZNF540Q8NDQ6 DLEU2_6.2-201ENST00000620994 136 ntBASIC2.29□□□□□ -2.04
ZNF540Q8NDQ6 Z69908.1-201ENST00000622603 247 ntBASIC2.29□□□□□ -2.04
ZNF540Q8NDQ6 Z99571.1-201ENST00000636677 394 ntBASIC2.29□□□□□ -2.04
ZNF540Q8NDQ6 MTND5P42-201ENST00000637720 498 ntBASIC2.29□□□□□ -2.04
ZNF540Q8NDQ6 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
ZNF540Q8NDQ6 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.29□□□□□ -2.04
ZNF540Q8NDQ6 ELL2P3-201ENST00000457883 1602 ntBASIC2.28□□□□□ -2.04
ZNF540Q8NDQ6 AC005336.3-201ENST00000623833 2679 ntBASIC2.28□□□□□ -2.04
ZNF540Q8NDQ6 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
ZNF540Q8NDQ6 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
ZNF540Q8NDQ6 RNU4-82P-201ENST00000362443 140 ntBASIC2.28□□□□□ -2.04
ZNF540Q8NDQ6 Y_RNA.18-201ENST00000362461 102 ntBASIC2.28□□□□□ -2.04
ZNF540Q8NDQ6 Y_RNA.51-201ENST00000362725 102 ntBASIC2.28□□□□□ -2.04
ZNF540Q8NDQ6 SNORA80E-201ENST00000384744 137 ntBASIC2.28□□□□□ -2.04
ZNF540Q8NDQ6 MIR95-201ENST00000385072 81 ntBASIC2.28□□□□□ -2.04
ZNF540Q8NDQ6 MT-TH-201ENST00000387441 69 ntBASIC2.28□□□□□ -2.04
ZNF540Q8NDQ6 SNORA40.19-201ENST00000390846 128 ntBASIC2.28□□□□□ -2.04
ZNF540Q8NDQ6 U3.40-201ENST00000408706 208 ntBASIC2.28□□□□□ -2.04
ZNF540Q8NDQ6 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC2.28□□□□□ -2.04
ZNF540Q8NDQ6 Z99497.1-201ENST00000421282 135 ntBASIC2.28□□□□□ -2.04
ZNF540Q8NDQ6 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC2.28□□□□□ -2.04
ZNF540Q8NDQ6 MTCO2P16-201ENST00000436962 677 ntBASIC2.28□□□□□ -2.04
ZNF540Q8NDQ6 AL031667.1-201ENST00000440222 725 ntBASIC2.28□□□□□ -2.04
ZNF540Q8NDQ6 AC112771.1-201ENST00000463581 102 ntBASIC2.28□□□□□ -2.04
ZNF540Q8NDQ6 MTND1P3-201ENST00000484956 952 ntBASIC2.28□□□□□ -2.04
ZNF540Q8NDQ6 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.28□□□□□ -2.04
ZNF540Q8NDQ6 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC2.28□□□□□ -2.04
ZNF540Q8NDQ6 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC2.28□□□□□ -2.04
ZNF540Q8NDQ6 SNORA48.11-201ENST00000517015 89 ntBASIC2.28□□□□□ -2.04
ZNF540Q8NDQ6 FAM92A1P1-201ENST00000528023 890 ntBASIC2.28□□□□□ -2.04
ZNF540Q8NDQ6 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC2.28□□□□□ -2.04
ZNF540Q8NDQ6 PRELID2P1-201ENST00000552837 301 ntBASIC2.28□□□□□ -2.04
ZNF540Q8NDQ6 AC092354.1-201ENST00000606057 376 ntBASIC2.28□□□□□ -2.04
ZNF540Q8NDQ6 AL031775.1-201ENST00000607014 887 ntBASIC2.28□□□□□ -2.04
ZNF540Q8NDQ6 AC104010.1-201ENST00000616889 150 ntBASIC2.28□□□□□ -2.04
ZNF540Q8NDQ6 AC068137.4-201ENST00000638485 296 ntBASIC2.28□□□□□ -2.04
ZNF540Q8NDQ6 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.28□□□□□ -2.05
ZNF540Q8NDQ6 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 ATP8A2P3-201ENST00000426792 1536 ntBASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 AL390237.1-201ENST00000404226 1415 ntBASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 Y_RNA.77-201ENST00000362962 107 ntBASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 RNU1-51P-201ENST00000365345 176 ntBASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 Z98749.2-208ENST00000381646 500 ntBASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 RNU6-253P-201ENST00000384730 105 ntBASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 RNU2-52P-201ENST00000410680 190 ntBASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 RN7SKP284-201ENST00000411002 343 ntBASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 AL356379.1-201ENST00000414105 126 ntBASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 CYCSP46-201ENST00000423569 204 ntBASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 GDI2P2-201ENST00000445131 608 ntBASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 AC108938.1-201ENST00000451204 136 ntBASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 AC126389.1-201ENST00000477436 290 ntBASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 SNORA31.19-201ENST00000517079 126 ntBASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 RNU6-1315P-201ENST00000517187 99 ntBASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 AC009902.1-201ENST00000519351 183 ntBASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 AC025755.1-201ENST00000521306 278 ntBASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 AP001646.1-201ENST00000527936 915 ntBASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC2.27□□□□□ -2.05
ZNF540Q8NDQ6 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC2.27□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 118.1 ms