Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 MIR8074-201ENST00000615081 81 ntBASIC0.45□□□□□ -2.34
USF3Q68DE3 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC0.45□□□□□ -2.34
USF3Q68DE3 RNU1-58P-201ENST00000362413 163 ntBASIC0.45□□□□□ -2.34
USF3Q68DE3 MIR1290-201ENST00000408735 78 ntBASIC0.45□□□□□ -2.34
USF3Q68DE3 USP9YP19-201ENST00000412165 485 ntBASIC0.45□□□□□ -2.34
USF3Q68DE3 USP9YP13-201ENST00000417797 480 ntBASIC0.45□□□□□ -2.34
USF3Q68DE3 AL590383.1-201ENST00000428602 75 ntBASIC0.45□□□□□ -2.34
USF3Q68DE3 AC245102.2-201ENST00000448956 180 ntBASIC0.45□□□□□ -2.34
USF3Q68DE3 AC006199.1-201ENST00000548728 219 ntBASIC0.45□□□□□ -2.34
USF3Q68DE3 HSPE1P19-201ENST00000603327 295 ntBASIC0.45□□□□□ -2.34
USF3Q68DE3 FTX_3.1-201ENST00000610451 147 ntBASIC0.45□□□□□ -2.34
USF3Q68DE3 AC067863.3-201ENST00000624172 122 ntBASIC0.45□□□□□ -2.34
USF3Q68DE3 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.45□□□□□ -2.34
USF3Q68DE3 RNU6-921P-201ENST00000384361 107 ntBASIC0.44□□□□□ -2.34
USF3Q68DE3 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC0.44□□□□□ -2.34
USF3Q68DE3 MIR1283-2-201ENST00000408621 87 ntBASIC0.44□□□□□ -2.34
USF3Q68DE3 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC0.44□□□□□ -2.34
USF3Q68DE3 AC114737.2-201ENST00000421583 173 ntBASIC0.44□□□□□ -2.34
USF3Q68DE3 ZNF863P-201ENST00000426746 417 ntBASIC0.44□□□□□ -2.34
USF3Q68DE3 MTCO3P5-201ENST00000433620 714 ntBASIC0.44□□□□□ -2.34
USF3Q68DE3 HMGN3P1-201ENST00000453847 193 ntBASIC0.44□□□□□ -2.34
USF3Q68DE3 RPL9P9-202ENST00000466501 579 ntBASIC0.44□□□□□ -2.34
USF3Q68DE3 AC022483.1-201ENST00000514020 567 ntBASIC0.44□□□□□ -2.34
USF3Q68DE3 RNA5SP395-201ENST00000516567 118 ntBASIC0.44□□□□□ -2.34
USF3Q68DE3 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC0.44□□□□□ -2.34
USF3Q68DE3 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC0.44□□□□□ -2.34
USF3Q68DE3 CYP2C61P-201ENST00000604072 290 ntBASIC0.44□□□□□ -2.34
USF3Q68DE3 AC079610.2-201ENST00000604818 690 ntBASIC0.44□□□□□ -2.34
USF3Q68DE3 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC0.44□□□□□ -2.34
USF3Q68DE3 AC083865.1-201ENST00000636634 831 ntBASIC0.44□□□□□ -2.34
USF3Q68DE3 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.44□□□□□ -2.34
USF3Q68DE3 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC0.44□□□□□ -2.34
USF3Q68DE3 Y_RNA.280-201ENST00000364765 112 ntBASIC0.44□□□□□ -2.34
USF3Q68DE3 RNU6-750P-201ENST00000390946 107 ntBASIC0.44□□□□□ -2.34
USF3Q68DE3 AC078974.1-201ENST00000411597 223 ntBASIC0.44□□□□□ -2.34
USF3Q68DE3 AL512637.2-201ENST00000431287 1256 ntBASIC0.44□□□□□ -2.34
USF3Q68DE3 DYNLT3P2-201ENST00000442517 295 ntBASIC0.44□□□□□ -2.34
USF3Q68DE3 AC079140.2-201ENST00000506193 142 ntBASIC0.44□□□□□ -2.34
USF3Q68DE3 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC0.44□□□□□ -2.34
USF3Q68DE3 RNU6-491P-201ENST00000516099 110 ntBASIC0.44□□□□□ -2.34
USF3Q68DE3 RNA5SP165-201ENST00000517142 115 ntBASIC0.44□□□□□ -2.34
USF3Q68DE3 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC0.44□□□□□ -2.34
USF3Q68DE3 AC009268.1-201ENST00000561352 1203 ntBASIC0.44□□□□□ -2.34
USF3Q68DE3 AC010900.2-201ENST00000604508 210 ntBASIC0.44□□□□□ -2.34
USF3Q68DE3 AL161729.4-201ENST00000604650 476 ntBASIC0.44□□□□□ -2.34
USF3Q68DE3 AL391597.1-201ENST00000618707 694 ntBASIC0.44□□□□□ -2.34
USF3Q68DE3 SNORA63.3-201ENST00000362682 132 ntBASIC0.43□□□□□ -2.34
USF3Q68DE3 RNU1-124P-201ENST00000363861 145 ntBASIC0.43□□□□□ -2.34
USF3Q68DE3 AC013410.2-201ENST00000422627 201 ntBASIC0.43□□□□□ -2.34
USF3Q68DE3 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC0.43□□□□□ -2.34
USF3Q68DE3 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC0.43□□□□□ -2.34
USF3Q68DE3 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC0.43□□□□□ -2.34
USF3Q68DE3 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC0.43□□□□□ -2.34
USF3Q68DE3 AC109927.2-201ENST00000506416 303 ntBASIC0.43□□□□□ -2.34
USF3Q68DE3 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC0.43□□□□□ -2.34
USF3Q68DE3 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC0.43□□□□□ -2.34
USF3Q68DE3 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC0.43□□□□□ -2.34
USF3Q68DE3 NIFKP6-201ENST00000598115 845 ntBASIC0.43□□□□□ -2.34
USF3Q68DE3 AL031176.1-201ENST00000604554 466 ntBASIC0.43□□□□□ -2.34
USF3Q68DE3 AC022202.1-201ENST00000613515 211 ntBASIC0.43□□□□□ -2.34
USF3Q68DE3 CENPF-206ENST00000614578 528 ntTSL 5 BASIC0.43□□□□□ -2.34
USF3Q68DE3 MIR5739-201ENST00000619803 80 ntBASIC0.43□□□□□ -2.34
USF3Q68DE3 MIR6759-201ENST00000638110 65 ntBASIC0.43□□□□□ -2.34
USF3Q68DE3 MIR30A-201ENST00000385092 71 ntBASIC0.42□□□□□ -2.34
USF3Q68DE3 MIR514A1-201ENST00000385133 98 ntBASIC0.42□□□□□ -2.34
USF3Q68DE3 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC0.42□□□□□ -2.34
USF3Q68DE3 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC0.42□□□□□ -2.34
USF3Q68DE3 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC0.42□□□□□ -2.34
USF3Q68DE3 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC0.42□□□□□ -2.34
USF3Q68DE3 AC005832.3-201ENST00000537929 631 ntBASIC0.42□□□□□ -2.34
USF3Q68DE3 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC0.42□□□□□ -2.34
USF3Q68DE3 VN1R82P-201ENST00000601481 356 ntBASIC0.42□□□□□ -2.34
USF3Q68DE3 AL022067.1-201ENST00000602426 454 ntBASIC0.42□□□□□ -2.34
USF3Q68DE3 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC0.42□□□□□ -2.34
USF3Q68DE3 AL121890.5-201ENST00000620848 304 ntBASIC0.42□□□□□ -2.34
USF3Q68DE3 AC091925.2-201ENST00000625059 256 ntBASIC0.42□□□□□ -2.34
USF3Q68DE3 AC092192.1-201ENST00000633154 1018 ntBASIC0.42□□□□□ -2.34
USF3Q68DE3 ZNF680P1-201ENST00000436625 1469 ntBASIC0.42□□□□□ -2.34
USF3Q68DE3 RPL22P22-201ENST00000395439 379 ntBASIC0.42□□□□□ -2.34
USF3Q68DE3 NANOGP2-201ENST00000435391 727 ntBASIC0.42□□□□□ -2.34
USF3Q68DE3 AC073614.1-201ENST00000438690 650 ntBASIC0.42□□□□□ -2.34
USF3Q68DE3 ARPC3P5-201ENST00000448802 534 ntBASIC0.42□□□□□ -2.34
USF3Q68DE3 AC018437.1-201ENST00000492214 406 ntBASIC0.42□□□□□ -2.34
USF3Q68DE3 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC0.42□□□□□ -2.34
USF3Q68DE3 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC0.42□□□□□ -2.34
USF3Q68DE3 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC0.42□□□□□ -2.34
USF3Q68DE3 AC004217.3-201ENST00000551552 878 ntBASIC0.42□□□□□ -2.34
USF3Q68DE3 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC0.42□□□□□ -2.34
USF3Q68DE3 AC090772.4-201ENST00000623599 362 ntBASIC0.42□□□□□ -2.34
USF3Q68DE3 Z69720.2-201ENST00000624755 279 ntBASIC0.42□□□□□ -2.34
USF3Q68DE3 MIR5087-201ENST00000635826 76 ntBASIC0.42□□□□□ -2.34
USF3Q68DE3 RNU6-35P-201ENST00000384530 107 ntBASIC0.41□□□□□ -2.34
USF3Q68DE3 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.41□□□□□ -2.34
USF3Q68DE3 MIR888-201ENST00000401186 77 ntBASIC0.41□□□□□ -2.34
USF3Q68DE3 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC0.41□□□□□ -2.34
USF3Q68DE3 AL449283.1-202ENST00000418249 604 ntBASIC0.41□□□□□ -2.34
USF3Q68DE3 VN1R42P-201ENST00000424651 344 ntBASIC0.41□□□□□ -2.34
USF3Q68DE3 AC000111.3-201ENST00000433478 193 ntBASIC0.41□□□□□ -2.34
USF3Q68DE3 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC0.41□□□□□ -2.34
USF3Q68DE3 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC0.41□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms