Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 KATNBL1P6-201ENST00000453433 915 ntBASIC2.4□□□□□ -2.03
CCDC40Q4G0X9 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC2.4□□□□□ -2.03
CCDC40Q4G0X9 AL441985.1-201ENST00000457727 251 ntBASIC2.4□□□□□ -2.03
CCDC40Q4G0X9 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.4□□□□□ -2.03
CCDC40Q4G0X9 BZW1P2-201ENST00000473537 826 ntBASIC2.4□□□□□ -2.03
CCDC40Q4G0X9 RPL36AP48-201ENST00000485521 314 ntBASIC2.4□□□□□ -2.03
CCDC40Q4G0X9 MTCYBP35-201ENST00000503630 1137 ntBASIC2.4□□□□□ -2.03
CCDC40Q4G0X9 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC2.4□□□□□ -2.03
CCDC40Q4G0X9 SMURF2P1-201ENST00000514992 481 ntBASIC2.4□□□□□ -2.03
CCDC40Q4G0X9 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC2.4□□□□□ -2.03
CCDC40Q4G0X9 SNORA25.11-201ENST00000515935 105 ntBASIC2.4□□□□□ -2.03
CCDC40Q4G0X9 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.4□□□□□ -2.03
CCDC40Q4G0X9 AL133241.1-201ENST00000556832 487 ntBASIC2.4□□□□□ -2.03
CCDC40Q4G0X9 AC012213.3-201ENST00000577199 777 ntBASIC2.4□□□□□ -2.03
CCDC40Q4G0X9 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.4□□□□□ -2.03
CCDC40Q4G0X9 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.4□□□□□ -2.03
CCDC40Q4G0X9 MIR6840-201ENST00000611937 71 ntBASIC2.4□□□□□ -2.03
CCDC40Q4G0X9 DLEU2_6.2-201ENST00000620994 136 ntBASIC2.4□□□□□ -2.03
CCDC40Q4G0X9 AC244517.12-201ENST00000623581 663 ntBASIC2.4□□□□□ -2.03
CCDC40Q4G0X9 AC138627.2-201ENST00000624202 601 ntBASIC2.4□□□□□ -2.03
CCDC40Q4G0X9 MIR203B-201ENST00000636080 86 ntBASIC2.4□□□□□ -2.03
CCDC40Q4G0X9 IGHVIII-44-202ENST00000636235 289 ntBASIC2.4□□□□□ -2.03
CCDC40Q4G0X9 ATP8A2P3-201ENST00000426792 1536 ntBASIC2.4□□□□□ -2.03
CCDC40Q4G0X9 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
CCDC40Q4G0X9 Z75746.1-201ENST00000440243 2080 ntBASIC2.4□□□□□ -2.03
CCDC40Q4G0X9 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.39□□□□□ -2.03
CCDC40Q4G0X9 AC006020.1-201ENST00000420179 1854 ntBASIC2.39□□□□□ -2.03
CCDC40Q4G0X9 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
CCDC40Q4G0X9 RNU6-553P-201ENST00000364047 96 ntBASIC2.39□□□□□ -2.03
CCDC40Q4G0X9 SNORA6-201ENST00000384033 151 ntBASIC2.39□□□□□ -2.03
CCDC40Q4G0X9 Y_RNA.500-201ENST00000384466 111 ntBASIC2.39□□□□□ -2.03
CCDC40Q4G0X9 BTF3P7-201ENST00000407097 488 ntBASIC2.39□□□□□ -2.03
CCDC40Q4G0X9 SNORD23.1-201ENST00000408212 104 ntBASIC2.39□□□□□ -2.03
CCDC40Q4G0X9 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC2.39□□□□□ -2.03
CCDC40Q4G0X9 AC114491.1-201ENST00000416095 246 ntBASIC2.39□□□□□ -2.03
CCDC40Q4G0X9 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC2.39□□□□□ -2.03
CCDC40Q4G0X9 MTND4P20-201ENST00000424125 869 ntBASIC2.39□□□□□ -2.03
CCDC40Q4G0X9 TAF9P1-201ENST00000445421 515 ntBASIC2.39□□□□□ -2.03
CCDC40Q4G0X9 TAF9P2-201ENST00000454958 515 ntBASIC2.39□□□□□ -2.03
CCDC40Q4G0X9 AC109486.1-201ENST00000486833 374 ntBASIC2.39□□□□□ -2.03
CCDC40Q4G0X9 RPL22P13-201ENST00000493291 347 ntBASIC2.39□□□□□ -2.03
CCDC40Q4G0X9 AC090255.1-201ENST00000495779 349 ntBASIC2.39□□□□□ -2.03
CCDC40Q4G0X9 Y_RNA.672-201ENST00000516289 104 ntBASIC2.39□□□□□ -2.03
CCDC40Q4G0X9 RNU6-759P-201ENST00000516740 103 ntBASIC2.39□□□□□ -2.03
CCDC40Q4G0X9 RPL21P5-201ENST00000554662 472 ntBASIC2.39□□□□□ -2.03
CCDC40Q4G0X9 AL022154.1-201ENST00000604698 785 ntBASIC2.39□□□□□ -2.03
CCDC40Q4G0X9 AC092354.1-201ENST00000606057 376 ntBASIC2.39□□□□□ -2.03
CCDC40Q4G0X9 AL451064.1-201ENST00000607718 471 ntBASIC2.39□□□□□ -2.03
CCDC40Q4G0X9 AC126118.1-201ENST00000607744 628 ntBASIC2.39□□□□□ -2.03
CCDC40Q4G0X9 AL161423.1-201ENST00000613700 262 ntBASIC2.39□□□□□ -2.03
CCDC40Q4G0X9 USP12-203ENST00000620323 349 ntTSL 3 BASIC2.39□□□□□ -2.03
CCDC40Q4G0X9 AC024940.5-201ENST00000622889 474 ntBASIC2.39□□□□□ -2.03
CCDC40Q4G0X9 HSPA8P4-201ENST00000511877 1920 ntBASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 MIR449A-201ENST00000362113 91 ntBASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 RNU4-52P-201ENST00000384209 138 ntBASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 AL031577.2-201ENST00000404133 280 ntBASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 AL133475.1-201ENST00000404414 305 ntBASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 NPM1P11-201ENST00000417106 855 ntBASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 ELOCP4-201ENST00000420090 333 ntBASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 AC097463.2-201ENST00000421074 142 ntBASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 IPO7P1-201ENST00000442031 636 ntBASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 AL583843.1-201ENST00000456070 346 ntBASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 AC068781.1-201ENST00000488231 618 ntBASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 MTND1P22-201ENST00000510572 951 ntBASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 MRPS33P3-201ENST00000513456 322 ntBASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 FABP5P5-201ENST00000515537 406 ntBASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 AC106038.2-201ENST00000520706 568 ntBASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 AL358333.2-201ENST00000556834 529 ntTSL 5 BASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 AC025678.1-201ENST00000567861 338 ntBASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 MIR548AB-201ENST00000584917 84 ntBASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 AC012065.4-201ENST00000602445 679 ntBASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 AL360219.1-201ENST00000610230 366 ntBASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 AL359547.2-201ENST00000615810 418 ntBASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 AC010378.1-201ENST00000619270 362 ntBASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.38□□□□□ -2.03
CCDC40Q4G0X9 AC103710.2-202ENST00000641454 2853 ntBASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 MIR558-201ENST00000384920 94 ntBASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 RPL23AP32-201ENST00000395315 459 ntBASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 CIR1P3-201ENST00000405137 479 ntBASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 AL355497.1-201ENST00000406262 551 ntBASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 FTH1P15-201ENST00000406984 280 ntBASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 AC016831.2-201ENST00000417179 352 ntBASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 MTND5P25-201ENST00000430499 799 ntBASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC2.37□□□□□ -2.03
CCDC40Q4G0X9 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.37□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms