Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC0.82□□□□□ -2.28
FOXA3P55318 RPL37P6-201ENST00000460682 294 ntBASIC0.82□□□□□ -2.28
FOXA3P55318 RPS26P55-201ENST00000471178 356 ntBASIC0.82□□□□□ -2.28
FOXA3P55318 RPL7P43-201ENST00000478876 753 ntBASIC0.82□□□□□ -2.28
FOXA3P55318 AC093852.1-201ENST00000503587 266 ntBASIC0.82□□□□□ -2.28
FOXA3P55318 AC114981.1-201ENST00000503897 678 ntBASIC0.82□□□□□ -2.28
FOXA3P55318 MTCYBP43-201ENST00000513621 740 ntBASIC0.82□□□□□ -2.28
FOXA3P55318 RNU6-1183P-201ENST00000517054 60 ntBASIC0.82□□□□□ -2.28
FOXA3P55318 RNU6-548P-201ENST00000517083 115 ntBASIC0.82□□□□□ -2.28
FOXA3P55318 AP001189.2-201ENST00000527320 189 ntBASIC0.82□□□□□ -2.28
FOXA3P55318 AP003122.4-201ENST00000530980 758 ntBASIC0.82□□□□□ -2.28
FOXA3P55318 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC0.82□□□□□ -2.28
FOXA3P55318 AC012414.6-201ENST00000568241 401 ntBASIC0.82□□□□□ -2.28
FOXA3P55318 AC002400.1-201ENST00000569310 726 ntBASIC0.82□□□□□ -2.28
FOXA3P55318 MIR4789-201ENST00000577469 82 ntBASIC0.82□□□□□ -2.28
FOXA3P55318 AF038458.1-201ENST00000588406 262 ntBASIC0.82□□□□□ -2.28
FOXA3P55318 AL158827.2-201ENST00000602494 330 ntBASIC0.82□□□□□ -2.28
FOXA3P55318 AC098826.3-201ENST00000603823 466 ntBASIC0.82□□□□□ -2.28
FOXA3P55318 AC034229.4-201ENST00000607861 441 ntBASIC0.82□□□□□ -2.28
FOXA3P55318 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC0.82□□□□□ -2.28
FOXA3P55318 AL691447.3-201ENST00000635020 330 ntBASIC0.82□□□□□ -2.28
FOXA3P55318 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
FOXA3P55318 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC0.81□□□□□ -2.28
FOXA3P55318 RNU6-1280P-201ENST00000365211 107 ntBASIC0.81□□□□□ -2.28
FOXA3P55318 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC0.81□□□□□ -2.28
FOXA3P55318 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC0.81□□□□□ -2.28
FOXA3P55318 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC0.81□□□□□ -2.28
FOXA3P55318 RNU6-1222P-201ENST00000384615 107 ntBASIC0.81□□□□□ -2.28
FOXA3P55318 NCOR1P3-201ENST00000420479 303 ntBASIC0.81□□□□□ -2.28
FOXA3P55318 GTF2IP3-201ENST00000433887 494 ntBASIC0.81□□□□□ -2.28
FOXA3P55318 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC0.81□□□□□ -2.28
FOXA3P55318 RPL7P55-201ENST00000450522 746 ntBASIC0.81□□□□□ -2.28
FOXA3P55318 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC0.81□□□□□ -2.28
FOXA3P55318 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC0.81□□□□□ -2.28
FOXA3P55318 AC116655.1-201ENST00000508324 901 ntBASIC0.81□□□□□ -2.28
FOXA3P55318 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC0.81□□□□□ -2.28
FOXA3P55318 RNU6-1102P-201ENST00000516149 96 ntBASIC0.81□□□□□ -2.28
FOXA3P55318 AC109329.1-201ENST00000518744 317 ntBASIC0.81□□□□□ -2.28
FOXA3P55318 AC006518.2-201ENST00000542513 940 ntBASIC0.81□□□□□ -2.28
FOXA3P55318 RAB11AP2-201ENST00000545905 639 ntBASIC0.81□□□□□ -2.28
FOXA3P55318 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC0.81□□□□□ -2.28
FOXA3P55318 AC138915.2-201ENST00000569776 97 ntBASIC0.81□□□□□ -2.28
FOXA3P55318 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC0.81□□□□□ -2.28
FOXA3P55318 AC123912.5-201ENST00000605470 343 ntBASIC0.81□□□□□ -2.28
FOXA3P55318 AC096772.1-201ENST00000609146 564 ntBASIC0.81□□□□□ -2.28
FOXA3P55318 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
FOXA3P55318 AL132822.1-201ENST00000617063 513 ntBASIC0.81□□□□□ -2.28
FOXA3P55318 AC090517.3-201ENST00000625170 141 ntBASIC0.81□□□□□ -2.28
FOXA3P55318 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC0.8□□□□□ -2.28
FOXA3P55318 MIR16-2-201ENST00000362117 81 ntBASIC0.8□□□□□ -2.28
FOXA3P55318 RNU4-91P-201ENST00000364778 135 ntBASIC0.8□□□□□ -2.28
FOXA3P55318 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC0.8□□□□□ -2.28
FOXA3P55318 U6.112-201ENST00000384129 70 ntBASIC0.8□□□□□ -2.28
FOXA3P55318 RNU2-32P-201ENST00000411193 191 ntBASIC0.8□□□□□ -2.28
FOXA3P55318 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC0.8□□□□□ -2.28
FOXA3P55318 AL355994.1-201ENST00000424379 260 ntBASIC0.8□□□□□ -2.28
FOXA3P55318 BX119904.4-201ENST00000424402 301 ntBASIC0.8□□□□□ -2.28
FOXA3P55318 CST2P1-201ENST00000425770 87 ntBASIC0.8□□□□□ -2.28
FOXA3P55318 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC0.8□□□□□ -2.28
FOXA3P55318 HMGB1P27-201ENST00000431429 603 ntBASIC0.8□□□□□ -2.28
FOXA3P55318 ZFAND6P1-201ENST00000434138 605 ntBASIC0.8□□□□□ -2.28
FOXA3P55318 MTCO3P45-201ENST00000443036 613 ntBASIC0.8□□□□□ -2.28
FOXA3P55318 AC010095.1-201ENST00000443543 144 ntBASIC0.8□□□□□ -2.28
FOXA3P55318 RNU6-775P-201ENST00000459318 96 ntBASIC0.8□□□□□ -2.28
FOXA3P55318 RN7SL429P-201ENST00000479090 223 ntBASIC0.8□□□□□ -2.28
FOXA3P55318 RN7SL489P-201ENST00000486185 223 ntBASIC0.8□□□□□ -2.28
FOXA3P55318 AC108729.1-201ENST00000487812 947 ntBASIC0.8□□□□□ -2.28
FOXA3P55318 RN7SL327P-201ENST00000488659 223 ntBASIC0.8□□□□□ -2.28
FOXA3P55318 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC0.8□□□□□ -2.28
FOXA3P55318 SNORA76.2-201ENST00000517095 137 ntBASIC0.8□□□□□ -2.28
FOXA3P55318 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC0.8□□□□□ -2.28
FOXA3P55318 AC136619.2-201ENST00000563361 631 ntBASIC0.8□□□□□ -2.28
FOXA3P55318 AP001542.2-201ENST00000593141 364 ntBASIC0.8□□□□□ -2.28
FOXA3P55318 OR4H6P-202ENST00000603819 340 ntBASIC0.8□□□□□ -2.28
FOXA3P55318 AC107952.2-201ENST00000606048 486 ntBASIC0.8□□□□□ -2.28
FOXA3P55318 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC0.8□□□□□ -2.28
FOXA3P55318 AL355472.4-201ENST00000610233 626 ntBASIC0.8□□□□□ -2.28
FOXA3P55318 AL133445.2-201ENST00000611191 527 ntBASIC0.8□□□□□ -2.28
FOXA3P55318 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC0.8□□□□□ -2.28
FOXA3P55318 RN7SL853P-201ENST00000617250 223 ntBASIC0.8□□□□□ -2.28
FOXA3P55318 AC013470.4-201ENST00000619978 986 ntBASIC0.8□□□□□ -2.28
FOXA3P55318 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC0.79□□□□□ -2.28
FOXA3P55318 RNU6-216P-201ENST00000363282 104 ntBASIC0.79□□□□□ -2.28
FOXA3P55318 RNU6-546P-201ENST00000383991 107 ntBASIC0.79□□□□□ -2.28
FOXA3P55318 MIR23A-201ENST00000385245 73 ntBASIC0.79□□□□□ -2.28
FOXA3P55318 USP9YP26-201ENST00000421008 661 ntBASIC0.79□□□□□ -2.28
FOXA3P55318 AC008267.5-201ENST00000424928 265 ntBASIC0.79□□□□□ -2.28
FOXA3P55318 USP9YP18-201ENST00000425912 695 ntBASIC0.79□□□□□ -2.28
FOXA3P55318 TOMM20P4-201ENST00000427861 435 ntBASIC0.79□□□□□ -2.28
FOXA3P55318 DYNLT3P2-201ENST00000442517 295 ntBASIC0.79□□□□□ -2.28
FOXA3P55318 AL022238.1-201ENST00000442557 355 ntBASIC0.79□□□□□ -2.28
FOXA3P55318 USP9YP17-201ENST00000444617 696 ntBASIC0.79□□□□□ -2.28
FOXA3P55318 RPL39P29-201ENST00000447779 157 ntBASIC0.79□□□□□ -2.28
FOXA3P55318 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC0.79□□□□□ -2.28
FOXA3P55318 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC0.79□□□□□ -2.28
FOXA3P55318 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC0.79□□□□□ -2.28
FOXA3P55318 AC010468.3-201ENST00000508225 458 ntBASIC0.79□□□□□ -2.28
FOXA3P55318 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC0.79□□□□□ -2.28
FOXA3P55318 RNU7-40P-201ENST00000516397 64 ntBASIC0.79□□□□□ -2.28
FOXA3P55318 SNORA31.17-201ENST00000516953 127 ntBASIC0.79□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 106.3 ms