Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC079395.3-201ENST00000615161 484 ntBASIC2.23□□□□□ -2.05
MSH6P52701 AL607023.1-201ENST00000620045 248 ntBASIC2.23□□□□□ -2.05
MSH6P52701 AL391262.2-201ENST00000622466 494 ntBASIC2.23□□□□□ -2.05
MSH6P52701 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
MSH6P52701 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
MSH6P52701 AL391994.1-201ENST00000254724 282 ntBASIC2.22□□□□□ -2.05
MSH6P52701 SNORA68.1-201ENST00000364537 132 ntBASIC2.22□□□□□ -2.05
MSH6P52701 RNU6-1200P-201ENST00000384162 107 ntBASIC2.22□□□□□ -2.05
MSH6P52701 AC078974.1-201ENST00000411597 223 ntBASIC2.22□□□□□ -2.05
MSH6P52701 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC2.22□□□□□ -2.05
MSH6P52701 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC2.22□□□□□ -2.05
MSH6P52701 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC2.22□□□□□ -2.05
MSH6P52701 UBE2FP3-201ENST00000436366 524 ntBASIC2.22□□□□□ -2.05
MSH6P52701 AL606662.1-201ENST00000445763 553 ntBASIC2.22□□□□□ -2.05
MSH6P52701 AL606517.1-201ENST00000446914 387 ntBASIC2.22□□□□□ -2.05
MSH6P52701 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC2.22□□□□□ -2.05
MSH6P52701 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.22□□□□□ -2.05
MSH6P52701 RN7SKP258-201ENST00000517151 304 ntBASIC2.22□□□□□ -2.05
MSH6P52701 AC090888.2-201ENST00000559765 1144 ntBASIC2.22□□□□□ -2.05
MSH6P52701 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC2.22□□□□□ -2.05
MSH6P52701 MIR4293-201ENST00000584305 78 ntBASIC2.22□□□□□ -2.05
MSH6P52701 AL031281.1-201ENST00000604049 488 ntBASIC2.22□□□□□ -2.05
MSH6P52701 AC025588.2-201ENST00000604851 466 ntBASIC2.22□□□□□ -2.05
MSH6P52701 AC008498.1-201ENST00000613012 531 ntBASIC2.22□□□□□ -2.05
MSH6P52701 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
MSH6P52701 RNU4-13P-201ENST00000364019 141 ntBASIC2.21□□□□□ -2.06
MSH6P52701 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
MSH6P52701 RNU6-278P-201ENST00000390945 109 ntBASIC2.21□□□□□ -2.06
MSH6P52701 AL359634.1-202ENST00000404721 284 ntBASIC2.21□□□□□ -2.06
MSH6P52701 AL513475.1-201ENST00000406602 315 ntBASIC2.21□□□□□ -2.06
MSH6P52701 RNU2-40P-201ENST00000410833 196 ntBASIC2.21□□□□□ -2.06
MSH6P52701 RN7SKP101-201ENST00000411376 320 ntBASIC2.21□□□□□ -2.06
MSH6P52701 RPS24P7-201ENST00000416921 246 ntBASIC2.21□□□□□ -2.06
MSH6P52701 RPL22P18-201ENST00000417197 377 ntBASIC2.21□□□□□ -2.06
MSH6P52701 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC2.21□□□□□ -2.06
MSH6P52701 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC2.21□□□□□ -2.06
MSH6P52701 AL022400.1-201ENST00000423946 935 ntBASIC2.21□□□□□ -2.06
MSH6P52701 AC098614.2-201ENST00000426040 255 ntBASIC2.21□□□□□ -2.06
MSH6P52701 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC2.21□□□□□ -2.06
MSH6P52701 SNRPEP9-201ENST00000436794 238 ntBASIC2.21□□□□□ -2.06
MSH6P52701 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC2.21□□□□□ -2.06
MSH6P52701 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC2.21□□□□□ -2.06
MSH6P52701 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.21□□□□□ -2.06
MSH6P52701 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC2.21□□□□□ -2.06
MSH6P52701 AMD1P1-201ENST00000457220 922 ntBASIC2.21□□□□□ -2.06
MSH6P52701 RNU6-64P-201ENST00000517119 105 ntBASIC2.21□□□□□ -2.06
MSH6P52701 RNA5SP290-201ENST00000517133 127 ntBASIC2.21□□□□□ -2.06
MSH6P52701 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC2.21□□□□□ -2.06
MSH6P52701 AP000907.2-201ENST00000530827 353 ntBASIC2.21□□□□□ -2.06
MSH6P52701 AC090616.3-201ENST00000582184 217 ntBASIC2.21□□□□□ -2.06
MSH6P52701 ABBA01006766.1-201ENST00000584728 294 ntBASIC2.21□□□□□ -2.06
MSH6P52701 AC004805.2-201ENST00000605382 482 ntBASIC2.21□□□□□ -2.06
MSH6P52701 AC027449.1-201ENST00000608890 407 ntBASIC2.21□□□□□ -2.06
MSH6P52701 AL050303.3-201ENST00000613704 284 ntBASIC2.21□□□□□ -2.06
MSH6P52701 AL353770.2-201ENST00000620024 78 ntBASIC2.21□□□□□ -2.06
MSH6P52701 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC2.21□□□□□ -2.06
MSH6P52701 U2.21-201ENST00000637295 81 ntBASIC2.21□□□□□ -2.06
MSH6P52701 AL596028.1-201ENST00000326971 197 ntBASIC2.2□□□□□ -2.06
MSH6P52701 Y_RNA.245-201ENST00000364493 95 ntBASIC2.2□□□□□ -2.06
MSH6P52701 Y_RNA.302-201ENST00000364997 102 ntBASIC2.2□□□□□ -2.06
MSH6P52701 MIR517C-201ENST00000385103 95 ntBASIC2.2□□□□□ -2.06
MSH6P52701 AC114763.2-201ENST00000412593 826 ntTSL 2 BASIC2.2□□□□□ -2.06
MSH6P52701 VPS26BP1-201ENST00000417155 755 ntBASIC2.2□□□□□ -2.06
MSH6P52701 BPY2DP-201ENST00000422208 265 ntBASIC2.2□□□□□ -2.06
MSH6P52701 AC010153.1-201ENST00000432862 727 ntBASIC2.2□□□□□ -2.06
MSH6P52701 MTND1P28-201ENST00000435623 950 ntBASIC2.2□□□□□ -2.06
MSH6P52701 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC2.2□□□□□ -2.06
MSH6P52701 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC2.2□□□□□ -2.06
MSH6P52701 AC009296.1-201ENST00000443146 155 ntBASIC2.2□□□□□ -2.06
MSH6P52701 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.2□□□□□ -2.06
MSH6P52701 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC2.2□□□□□ -2.06
MSH6P52701 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC2.2□□□□□ -2.06
MSH6P52701 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.2□□□□□ -2.06
MSH6P52701 AC107626.1-201ENST00000471084 183 ntBASIC2.2□□□□□ -2.06
MSH6P52701 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC2.2□□□□□ -2.06
MSH6P52701 RPF2P2-201ENST00000504693 896 ntBASIC2.2□□□□□ -2.06
MSH6P52701 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC2.2□□□□□ -2.06
MSH6P52701 SNORA31.24-201ENST00000517232 57 ntBASIC2.2□□□□□ -2.06
MSH6P52701 MRPS36P3-201ENST00000519284 130 ntBASIC2.2□□□□□ -2.06
MSH6P52701 AC022634.1-201ENST00000520765 532 ntBASIC2.2□□□□□ -2.06
MSH6P52701 AP005660.1-201ENST00000522972 293 ntBASIC2.2□□□□□ -2.06
MSH6P52701 AP001372.4-201ENST00000524889 472 ntBASIC2.2□□□□□ -2.06
MSH6P52701 DEFB108A-201ENST00000530110 222 ntBASIC2.2□□□□□ -2.06
MSH6P52701 AL359212.1-201ENST00000556608 614 ntBASIC2.2□□□□□ -2.06
MSH6P52701 AGGF1P5-201ENST00000567900 919 ntBASIC2.2□□□□□ -2.06
MSH6P52701 MIR3618-201ENST00000580330 88 ntBASIC2.2□□□□□ -2.06
MSH6P52701 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC2.2□□□□□ -2.06
MSH6P52701 MIR4307-201ENST00000582802 84 ntBASIC2.2□□□□□ -2.06
MSH6P52701 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC2.2□□□□□ -2.06
MSH6P52701 AC112187.2-201ENST00000604345 283 ntBASIC2.2□□□□□ -2.06
MSH6P52701 AC091965.4-201ENST00000607691 587 ntBASIC2.2□□□□□ -2.06
MSH6P52701 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.2□□□□□ -2.06
MSH6P52701 AL136313.1-201ENST00000624804 202 ntBASIC2.2□□□□□ -2.06
MSH6P52701 UGP2-230ENST00000626380 276 ntTSL 5 BASIC2.2□□□□□ -2.06
MSH6P52701 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC2.2□□□□□ -2.06
MSH6P52701 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
MSH6P52701 RNY4P24-201ENST00000362735 96 ntBASIC2.19□□□□□ -2.06
MSH6P52701 RNU6-1167P-201ENST00000363227 94 ntBASIC2.19□□□□□ -2.06
MSH6P52701 RNU6-1284P-201ENST00000363701 100 ntBASIC2.19□□□□□ -2.06
MSH6P52701 MIR524-201ENST00000385242 87 ntBASIC2.19□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 121.9 ms