Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RNU6-864P-201ENST00000516256 108 ntBASIC2.75□□□□□ -1.97
HOXA1P49639 SNORA70.18-201ENST00000516696 98 ntBASIC2.75□□□□□ -1.97
HOXA1P49639 SNORA31.19-201ENST00000517079 126 ntBASIC2.75□□□□□ -1.97
HOXA1P49639 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC2.75□□□□□ -1.97
HOXA1P49639 RNU6-323P-201ENST00000521915 107 ntBASIC2.75□□□□□ -1.97
HOXA1P49639 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC2.75□□□□□ -1.97
HOXA1P49639 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC2.75□□□□□ -1.97
HOXA1P49639 MTCO3P23-201ENST00000561363 289 ntBASIC2.75□□□□□ -1.97
HOXA1P49639 MIR5692A1-201ENST00000580523 69 ntBASIC2.75□□□□□ -1.97
HOXA1P49639 MIR3672-201ENST00000584290 82 ntBASIC2.75□□□□□ -1.97
HOXA1P49639 AC005261.5-201ENST00000596280 355 ntBASIC2.75□□□□□ -1.97
HOXA1P49639 HSPE1P7-201ENST00000604681 321 ntBASIC2.75□□□□□ -1.97
HOXA1P49639 MTND4LP5-201ENST00000605152 292 ntBASIC2.75□□□□□ -1.97
HOXA1P49639 AC123912.5-201ENST00000605470 343 ntBASIC2.75□□□□□ -1.97
HOXA1P49639 AC008962.1-201ENST00000605729 304 ntBASIC2.75□□□□□ -1.97
HOXA1P49639 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC2.75□□□□□ -1.97
HOXA1P49639 AF117829.1-206ENST00000621883 3802 ntBASIC2.75□□□□□ -1.97
HOXA1P49639 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
HOXA1P49639 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
HOXA1P49639 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC2.75□□□□□ -1.97
HOXA1P49639 AC121333.1-201ENST00000567488 2709 ntBASIC2.75□□□□□ -1.97
HOXA1P49639 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.75□□□□□ -1.97
HOXA1P49639 MAPK10-322ENST00000641485 4530 ntBASIC2.74□□□□□ -1.97
HOXA1P49639 Y_RNA.58-201ENST00000362807 102 ntBASIC2.74□□□□□ -1.97
HOXA1P49639 Y_RNA.154-201ENST00000363624 102 ntBASIC2.74□□□□□ -1.97
HOXA1P49639 RNY3P1-201ENST00000365085 102 ntBASIC2.74□□□□□ -1.97
HOXA1P49639 RNY3-201ENST00000365484 102 ntBASIC2.74□□□□□ -1.97
HOXA1P49639 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
HOXA1P49639 RNU1-109P-201ENST00000383960 147 ntBASIC2.74□□□□□ -1.97
HOXA1P49639 RNU6-217P-201ENST00000384164 104 ntBASIC2.74□□□□□ -1.97
HOXA1P49639 Y_RNA.490-201ENST00000384413 102 ntBASIC2.74□□□□□ -1.97
HOXA1P49639 SNORA46-201ENST00000384762 135 ntBASIC2.74□□□□□ -1.97
HOXA1P49639 EIF4E2P1-201ENST00000393781 255 ntBASIC2.74□□□□□ -1.97
HOXA1P49639 MIR450B-201ENST00000401182 78 ntBASIC2.74□□□□□ -1.97
HOXA1P49639 RN7SKP32-201ENST00000410167 303 ntBASIC2.74□□□□□ -1.97
HOXA1P49639 HMGN2P35-201ENST00000412164 270 ntBASIC2.74□□□□□ -1.97
HOXA1P49639 TMEM167AP1-201ENST00000423409 219 ntBASIC2.74□□□□□ -1.97
HOXA1P49639 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC2.74□□□□□ -1.97
HOXA1P49639 AL365400.1-201ENST00000431854 640 ntBASIC2.74□□□□□ -1.97
HOXA1P49639 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC2.74□□□□□ -1.97
HOXA1P49639 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC2.74□□□□□ -1.97
HOXA1P49639 AMD1P1-201ENST00000457220 922 ntBASIC2.74□□□□□ -1.97
HOXA1P49639 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC2.74□□□□□ -1.97
HOXA1P49639 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC2.74□□□□□ -1.97
HOXA1P49639 Y_RNA.682-201ENST00000516457 100 ntBASIC2.74□□□□□ -1.97
HOXA1P49639 RNU6-1332P-201ENST00000516666 104 ntBASIC2.74□□□□□ -1.97
HOXA1P49639 RNU6-572P-201ENST00000516724 80 ntBASIC2.74□□□□□ -1.97
HOXA1P49639 RNU6-826P-201ENST00000516827 104 ntBASIC2.74□□□□□ -1.97
HOXA1P49639 SNORA25.17-201ENST00000517184 124 ntBASIC2.74□□□□□ -1.97
HOXA1P49639 AC025423.5-201ENST00000550230 219 ntBASIC2.74□□□□□ -1.97
HOXA1P49639 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC2.74□□□□□ -1.97
HOXA1P49639 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC2.74□□□□□ -1.97
HOXA1P49639 AC005668.1-201ENST00000571142 476 ntBASIC2.74□□□□□ -1.97
HOXA1P49639 MIR4795-201ENST00000584182 89 ntBASIC2.74□□□□□ -1.97
HOXA1P49639 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC2.74□□□□□ -1.97
HOXA1P49639 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC2.74□□□□□ -1.97
HOXA1P49639 AC023043.3-201ENST00000593113 385 ntBASIC2.74□□□□□ -1.97
HOXA1P49639 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.74□□□□□ -1.97
HOXA1P49639 FTX_3.1-201ENST00000610451 147 ntBASIC2.74□□□□□ -1.97
HOXA1P49639 AL132765.2-201ENST00000610812 351 ntBASIC2.74□□□□□ -1.97
HOXA1P49639 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.74□□□□□ -1.97
HOXA1P49639 MIR6810-201ENST00000622701 70 ntBASIC2.74□□□□□ -1.97
HOXA1P49639 AC099506.2-201ENST00000623074 221 ntBASIC2.74□□□□□ -1.97
HOXA1P49639 AL359697.1-201ENST00000624879 587 ntBASIC2.74□□□□□ -1.97
HOXA1P49639 FTO-223ENST00000640179 210 ntTSL 5 BASIC2.74□□□□□ -1.97
HOXA1P49639 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
HOXA1P49639 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC2.73□□□□□ -1.97
HOXA1P49639 RNU1-70P-201ENST00000362618 164 ntBASIC2.73□□□□□ -1.97
HOXA1P49639 Y_RNA.61-201ENST00000362835 102 ntBASIC2.73□□□□□ -1.97
HOXA1P49639 Y_RNA.166-201ENST00000363730 102 ntBASIC2.73□□□□□ -1.97
HOXA1P49639 RNU6-884P-201ENST00000363889 107 ntBASIC2.73□□□□□ -1.97
HOXA1P49639 RNU6-694P-201ENST00000364071 147 ntBASIC2.73□□□□□ -1.97
HOXA1P49639 RNA5SP51-201ENST00000364750 119 ntBASIC2.73□□□□□ -1.97
HOXA1P49639 RNU6-395P-201ENST00000365662 106 ntBASIC2.73□□□□□ -1.97
HOXA1P49639 SNORD73A-201ENST00000386062 65 ntBASIC2.73□□□□□ -1.97
HOXA1P49639 RPS4XP3-201ENST00000398541 413 ntBASIC2.73□□□□□ -1.97
HOXA1P49639 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC2.73□□□□□ -1.97
HOXA1P49639 RNU6-607P-201ENST00000411283 108 ntBASIC2.73□□□□□ -1.97
HOXA1P49639 RNU6-1304P-201ENST00000411374 106 ntBASIC2.73□□□□□ -1.97
HOXA1P49639 AL353621.1-201ENST00000418219 243 ntBASIC2.73□□□□□ -1.97
HOXA1P49639 DBIP2-201ENST00000419076 262 ntBASIC2.73□□□□□ -1.97
HOXA1P49639 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC2.73□□□□□ -1.97
HOXA1P49639 AL590632.1-201ENST00000424289 371 ntBASIC2.73□□□□□ -1.97
HOXA1P49639 SKA2P1-201ENST00000425592 390 ntBASIC2.73□□□□□ -1.97
HOXA1P49639 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC2.73□□□□□ -1.97
HOXA1P49639 HMGB1P9-201ENST00000429856 646 ntBASIC2.73□□□□□ -1.97
HOXA1P49639 NDUFA5P4-201ENST00000436704 385 ntBASIC2.73□□□□□ -1.97
HOXA1P49639 HMGB1P18-201ENST00000438801 619 ntBASIC2.73□□□□□ -1.97
HOXA1P49639 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC2.73□□□□□ -1.97
HOXA1P49639 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC2.73□□□□□ -1.97
HOXA1P49639 AC008716.1-201ENST00000511084 513 ntBASIC2.73□□□□□ -1.97
HOXA1P49639 RN7SKP18-201ENST00000516005 275 ntBASIC2.73□□□□□ -1.97
HOXA1P49639 Y_RNA.675-201ENST00000516389 149 ntBASIC2.73□□□□□ -1.97
HOXA1P49639 RNU6-1069P-201ENST00000516612 133 ntBASIC2.73□□□□□ -1.97
HOXA1P49639 RNU6-256P-201ENST00000516747 97 ntBASIC2.73□□□□□ -1.97
HOXA1P49639 AC007991.1-201ENST00000522680 631 ntBASIC2.73□□□□□ -1.97
HOXA1P49639 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC2.73□□□□□ -1.97
HOXA1P49639 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
HOXA1P49639 HPRT1P3-201ENST00000539521 576 ntBASIC2.73□□□□□ -1.97
HOXA1P49639 LRRC37A5P-203ENST00000580181 585 ntBASIC2.73□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 89 ms