Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 SNORD59.2-201ENST00000516873 68 ntBASIC3.13□□□□□ -1.91
HOXC9P31274 RNA5SP503-201ENST00000517047 117 ntBASIC3.13□□□□□ -1.91
HOXC9P31274 ATP5F1P5-201ENST00000526403 760 ntBASIC3.13□□□□□ -1.91
HOXC9P31274 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC3.13□□□□□ -1.91
HOXC9P31274 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC3.13□□□□□ -1.91
HOXC9P31274 ADI1P3-201ENST00000549509 470 ntBASIC3.13□□□□□ -1.91
HOXC9P31274 MIR5007-201ENST00000583098 95 ntBASIC3.13□□□□□ -1.91
HOXC9P31274 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.13□□□□□ -1.91
HOXC9P31274 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC3.13□□□□□ -1.91
HOXC9P31274 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.13□□□□□ -1.91
HOXC9P31274 AC012409.4-201ENST00000612923 249 ntBASIC3.13□□□□□ -1.91
HOXC9P31274 AC092628.2-201ENST00000622492 339 ntBASIC3.13□□□□□ -1.91
HOXC9P31274 AGL-204ENST00000370161 6923 ntTSL 5 BASIC3.13□□□□□ -1.91
HOXC9P31274 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.13□□□□□ -1.91
HOXC9P31274 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HOXC9P31274 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXC9P31274 RNU4-12P-201ENST00000365233 139 ntBASIC3.12□□□□□ -1.91
HOXC9P31274 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
HOXC9P31274 OR51A5P-201ENST00000415429 942 ntBASIC3.12□□□□□ -1.91
HOXC9P31274 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXC9P31274 MTCO3P30-201ENST00000426425 670 ntBASIC3.12□□□□□ -1.91
HOXC9P31274 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC3.12□□□□□ -1.91
HOXC9P31274 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXC9P31274 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXC9P31274 AC087588.1-201ENST00000462203 316 ntBASIC3.12□□□□□ -1.91
HOXC9P31274 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC3.12□□□□□ -1.91
HOXC9P31274 AC019235.1-201ENST00000503847 207 ntBASIC3.12□□□□□ -1.91
HOXC9P31274 ARL4AP2-201ENST00000507378 601 ntBASIC3.12□□□□□ -1.91
HOXC9P31274 AC104806.1-201ENST00000508720 308 ntBASIC3.12□□□□□ -1.91
HOXC9P31274 RNA5SP76-201ENST00000516277 87 ntBASIC3.12□□□□□ -1.91
HOXC9P31274 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC3.12□□□□□ -1.91
HOXC9P31274 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC3.12□□□□□ -1.91
HOXC9P31274 SNHG1-210ENST00000539303 240 ntTSL 3 BASIC3.12□□□□□ -1.91
HOXC9P31274 AL512360.1-201ENST00000555346 234 ntBASIC3.12□□□□□ -1.91
HOXC9P31274 AC136619.2-201ENST00000563361 631 ntBASIC3.12□□□□□ -1.91
HOXC9P31274 MIR3186-201ENST00000577404 85 ntBASIC3.12□□□□□ -1.91
HOXC9P31274 AC008752.3-201ENST00000588113 712 ntBASIC3.12□□□□□ -1.91
HOXC9P31274 AL161798.1-201ENST00000604630 131 ntBASIC3.12□□□□□ -1.91
HOXC9P31274 AL670379.4-201ENST00000605279 254 ntBASIC3.12□□□□□ -1.91
HOXC9P31274 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC3.12□□□□□ -1.91
HOXC9P31274 SNORA50A-202ENST00000629536 136 ntBASIC3.12□□□□□ -1.91
HOXC9P31274 AL049641.1-201ENST00000441055 1948 ntBASIC3.12□□□□□ -1.91
HOXC9P31274 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
HOXC9P31274 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.12□□□□□ -1.91
HOXC9P31274 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
HOXC9P31274 TPTE2P4-201ENST00000258589 1605 ntBASIC3.11□□□□□ -1.91
HOXC9P31274 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
HOXC9P31274 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC3.11□□□□□ -1.91
HOXC9P31274 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.11□□□□□ -1.91
HOXC9P31274 RNU6-1029P-201ENST00000384109 107 ntBASIC3.11□□□□□ -1.91
HOXC9P31274 Y_RNA.576-201ENST00000384781 102 ntBASIC3.11□□□□□ -1.91
HOXC9P31274 MIR181A1-201ENST00000385026 110 ntBASIC3.11□□□□□ -1.91
HOXC9P31274 CISD1P1-201ENST00000393907 327 ntBASIC3.11□□□□□ -1.91
HOXC9P31274 RNU6-648P-201ENST00000410190 107 ntBASIC3.11□□□□□ -1.91
HOXC9P31274 RNA5SP111-201ENST00000411386 101 ntBASIC3.11□□□□□ -1.91
HOXC9P31274 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.11□□□□□ -1.91
HOXC9P31274 AL109913.1-201ENST00000421173 514 ntBASIC3.11□□□□□ -1.91
HOXC9P31274 AC012498.1-201ENST00000424037 437 ntBASIC3.11□□□□□ -1.91
HOXC9P31274 RPS3AP44-201ENST00000425466 790 ntBASIC3.11□□□□□ -1.91
HOXC9P31274 MTND3P21-201ENST00000433774 331 ntBASIC3.11□□□□□ -1.91
HOXC9P31274 AL606489.2-201ENST00000433886 234 ntBASIC3.11□□□□□ -1.91
HOXC9P31274 DDX3P2-201ENST00000446138 111 ntBASIC3.11□□□□□ -1.91
HOXC9P31274 AL590664.1-201ENST00000448065 339 ntBASIC3.11□□□□□ -1.91
HOXC9P31274 CECR9-201ENST00000453421 199 ntBASIC3.11□□□□□ -1.91
HOXC9P31274 RNU6-928P-201ENST00000516876 104 ntBASIC3.11□□□□□ -1.91
HOXC9P31274 AP003034.1-201ENST00000534621 422 ntBASIC3.11□□□□□ -1.91
HOXC9P31274 AK6P1-201ENST00000540219 478 ntBASIC3.11□□□□□ -1.91
HOXC9P31274 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC3.11□□□□□ -1.91
HOXC9P31274 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC3.11□□□□□ -1.91
HOXC9P31274 AC026464.5-201ENST00000562497 722 ntBASIC3.11□□□□□ -1.91
HOXC9P31274 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC3.11□□□□□ -1.91
HOXC9P31274 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC3.11□□□□□ -1.91
HOXC9P31274 MIR4524B-201ENST00000581569 115 ntBASIC3.11□□□□□ -1.91
HOXC9P31274 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC3.11□□□□□ -1.91
HOXC9P31274 AC017083.3-201ENST00000609955 700 ntBASIC3.11□□□□□ -1.91
HOXC9P31274 AC099778.2-201ENST00000610904 211 ntBASIC3.11□□□□□ -1.91
HOXC9P31274 AL359547.2-201ENST00000615810 418 ntBASIC3.11□□□□□ -1.91
HOXC9P31274 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.11□□□□□ -1.91
HOXC9P31274 AL512643.1-201ENST00000635735 524 ntBASIC3.11□□□□□ -1.91
HOXC9P31274 MTND5P17-201ENST00000418405 1603 ntBASIC3.11□□□□□ -1.91
HOXC9P31274 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
HOXC9P31274 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC3.1□□□□□ -1.91
HOXC9P31274 AC110774.1-201ENST00000623567 2018 ntBASIC3.1□□□□□ -1.91
HOXC9P31274 RNU6-1287P-201ENST00000362914 107 ntBASIC3.1□□□□□ -1.91
HOXC9P31274 SNORD115-7-201ENST00000365306 82 ntBASIC3.1□□□□□ -1.91
HOXC9P31274 RNU6-1060P-201ENST00000384664 107 ntBASIC3.1□□□□□ -1.91
HOXC9P31274 SNORA1.3-201ENST00000384676 136 ntBASIC3.1□□□□□ -1.91
HOXC9P31274 RNU6-606P-201ENST00000384721 111 ntBASIC3.1□□□□□ -1.91
HOXC9P31274 RNU6-1158P-201ENST00000391167 107 ntBASIC3.1□□□□□ -1.91
HOXC9P31274 USP9YP6-201ENST00000413550 854 ntBASIC3.1□□□□□ -1.91
HOXC9P31274 AC003685.2-201ENST00000422795 395 ntBASIC3.1□□□□□ -1.91
HOXC9P31274 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.1□□□□□ -1.91
HOXC9P31274 ELOCP14-201ENST00000428070 331 ntBASIC3.1□□□□□ -1.91
HOXC9P31274 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC3.1□□□□□ -1.91
HOXC9P31274 GPM6BP2-201ENST00000432046 144 ntBASIC3.1□□□□□ -1.91
HOXC9P31274 AC009969.1-201ENST00000438726 172 ntBASIC3.1□□□□□ -1.91
HOXC9P31274 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXC9P31274 ELOCP7-201ENST00000439968 331 ntBASIC3.1□□□□□ -1.91
HOXC9P31274 GPM6BP1-201ENST00000446387 144 ntBASIC3.1□□□□□ -1.91
HOXC9P31274 AC233702.1-201ENST00000482905 502 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms