Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 SNORA67.5-201ENST00000391036 107 ntBASIC1.18□□□□□ -2.22
HLA-DMBP28068 MIR1323-201ENST00000408090 73 ntBASIC1.18□□□□□ -2.22
HLA-DMBP28068 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC1.18□□□□□ -2.22
HLA-DMBP28068 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC1.18□□□□□ -2.22
HLA-DMBP28068 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC1.18□□□□□ -2.22
HLA-DMBP28068 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC1.18□□□□□ -2.22
HLA-DMBP28068 AC013262.1-201ENST00000426710 252 ntBASIC1.18□□□□□ -2.22
HLA-DMBP28068 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC1.18□□□□□ -2.22
HLA-DMBP28068 HMGB1P27-201ENST00000431429 603 ntBASIC1.18□□□□□ -2.22
HLA-DMBP28068 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC1.18□□□□□ -2.22
HLA-DMBP28068 AL603825.1-201ENST00000438481 80 ntBASIC1.18□□□□□ -2.22
HLA-DMBP28068 MTCO2P25-201ENST00000447065 681 ntBASIC1.18□□□□□ -2.22
HLA-DMBP28068 RNU7-59P-201ENST00000459101 61 ntBASIC1.18□□□□□ -2.22
HLA-DMBP28068 RN7SKP210-201ENST00000459176 261 ntBASIC1.18□□□□□ -2.22
HLA-DMBP28068 AC027575.1-201ENST00000481064 460 ntBASIC1.18□□□□□ -2.22
HLA-DMBP28068 AC009902.1-201ENST00000519351 183 ntBASIC1.18□□□□□ -2.22
HLA-DMBP28068 NAP1L1P1-201ENST00000524793 1063 ntBASIC1.18□□□□□ -2.22
HLA-DMBP28068 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.18□□□□□ -2.22
HLA-DMBP28068 CYCSP27-201ENST00000527643 293 ntBASIC1.18□□□□□ -2.22
HLA-DMBP28068 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.18□□□□□ -2.22
HLA-DMBP28068 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.18□□□□□ -2.22
HLA-DMBP28068 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC1.18□□□□□ -2.22
HLA-DMBP28068 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.18□□□□□ -2.22
HLA-DMBP28068 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC1.18□□□□□ -2.22
HLA-DMBP28068 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC1.18□□□□□ -2.22
HLA-DMBP28068 AL670379.10-201ENST00000604330 253 ntBASIC1.18□□□□□ -2.22
HLA-DMBP28068 RPL21P136-201ENST00000605378 396 ntBASIC1.18□□□□□ -2.22
HLA-DMBP28068 AL670379.9-201ENST00000605428 253 ntBASIC1.18□□□□□ -2.22
HLA-DMBP28068 PCMTD1P7-201ENST00000634506 357 ntBASIC1.18□□□□□ -2.22
HLA-DMBP28068 AC099654.9-201ENST00000637055 678 ntBASIC1.18□□□□□ -2.22
HLA-DMBP28068 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
HLA-DMBP28068 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
HLA-DMBP28068 MTND5P33-201ENST00000571250 1450 ntBASIC1.18□□□□□ -2.22
HLA-DMBP28068 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC1.17□□□□□ -2.22
HLA-DMBP28068 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC1.17□□□□□ -2.22
HLA-DMBP28068 AC138393.1-203ENST00000327086 343 ntBASIC1.17□□□□□ -2.22
HLA-DMBP28068 DLEU2_6.3-201ENST00000340052 136 ntBASIC1.17□□□□□ -2.22
HLA-DMBP28068 MIR126-201ENST00000362291 85 ntBASIC1.17□□□□□ -2.22
HLA-DMBP28068 RNU4-51P-201ENST00000364206 140 ntBASIC1.17□□□□□ -2.22
HLA-DMBP28068 RNU6-621P-201ENST00000364752 109 ntBASIC1.17□□□□□ -2.22
HLA-DMBP28068 Y_RNA.338-201ENST00000365320 114 ntBASIC1.17□□□□□ -2.22
HLA-DMBP28068 RNU1-57P-201ENST00000384491 166 ntBASIC1.17□□□□□ -2.22
HLA-DMBP28068 RNU6-14P-201ENST00000384630 106 ntBASIC1.17□□□□□ -2.22
HLA-DMBP28068 MIR29C-201ENST00000385231 88 ntBASIC1.17□□□□□ -2.22
HLA-DMBP28068 Y_RNA.578-201ENST00000390903 88 ntBASIC1.17□□□□□ -2.22
HLA-DMBP28068 SNORA17.3-201ENST00000391159 129 ntBASIC1.17□□□□□ -2.22
HLA-DMBP28068 RNA5SP465-201ENST00000391195 109 ntBASIC1.17□□□□□ -2.22
HLA-DMBP28068 MIR934-201ENST00000401241 83 ntBASIC1.17□□□□□ -2.22
HLA-DMBP28068 MIR1304-201ENST00000408243 91 ntBASIC1.17□□□□□ -2.22
HLA-DMBP28068 RNU2-48P-201ENST00000410694 191 ntBASIC1.17□□□□□ -2.22
HLA-DMBP28068 RN7SKP51-201ENST00000410781 304 ntBASIC1.17□□□□□ -2.22
HLA-DMBP28068 AC009310.1-201ENST00000414414 451 ntBASIC1.17□□□□□ -2.22
HLA-DMBP28068 EDNRB-AS1-201ENST00000422405 601 ntTSL 5 BASIC1.17□□□□□ -2.22
HLA-DMBP28068 BX510359.4-201ENST00000423750 193 ntBASIC1.17□□□□□ -2.22
HLA-DMBP28068 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC1.17□□□□□ -2.22
HLA-DMBP28068 HMGB1P18-201ENST00000438801 619 ntBASIC1.17□□□□□ -2.22
HLA-DMBP28068 AL357134.1-201ENST00000445848 426 ntBASIC1.17□□□□□ -2.22
HLA-DMBP28068 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC1.17□□□□□ -2.22
HLA-DMBP28068 FCF1P6-201ENST00000456841 595 ntBASIC1.17□□□□□ -2.22
HLA-DMBP28068 AC006512.1-201ENST00000468816 291 ntBASIC1.17□□□□□ -2.22
HLA-DMBP28068 AC023790.1-201ENST00000482174 347 ntBASIC1.17□□□□□ -2.22
HLA-DMBP28068 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC1.17□□□□□ -2.22
HLA-DMBP28068 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC1.17□□□□□ -2.22
HLA-DMBP28068 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC1.17□□□□□ -2.22
HLA-DMBP28068 AC113347.3-201ENST00000509113 148 ntBASIC1.17□□□□□ -2.22
HLA-DMBP28068 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC1.17□□□□□ -2.22
HLA-DMBP28068 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC1.17□□□□□ -2.22
HLA-DMBP28068 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC1.17□□□□□ -2.22
HLA-DMBP28068 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC1.17□□□□□ -2.22
HLA-DMBP28068 AC136619.2-201ENST00000563361 631 ntBASIC1.17□□□□□ -2.22
HLA-DMBP28068 SNORD53B-201ENST00000577887 78 ntBASIC1.17□□□□□ -2.22
HLA-DMBP28068 MIR4782-201ENST00000577987 79 ntBASIC1.17□□□□□ -2.22
HLA-DMBP28068 MIR4293-201ENST00000584305 78 ntBASIC1.17□□□□□ -2.22
HLA-DMBP28068 AC008507.2-201ENST00000588402 1176 ntBASIC1.17□□□□□ -2.22
HLA-DMBP28068 AC107952.2-201ENST00000606048 486 ntBASIC1.17□□□□□ -2.22
HLA-DMBP28068 AC024060.1-201ENST00000607052 494 ntBASIC1.17□□□□□ -2.22
HLA-DMBP28068 DLEU2_6.2-201ENST00000620994 136 ntBASIC1.17□□□□□ -2.22
HLA-DMBP28068 AP000648.3-201ENST00000623539 4507 ntBASIC1.17□□□□□ -2.22
HLA-DMBP28068 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
HLA-DMBP28068 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
HLA-DMBP28068 MIR378A-201ENST00000362177 66 ntBASIC1.16□□□□□ -2.22
HLA-DMBP28068 RNU5E-1-201ENST00000362477 120 ntBASIC1.16□□□□□ -2.22
HLA-DMBP28068 RNU6-1284P-201ENST00000363701 100 ntBASIC1.16□□□□□ -2.22
HLA-DMBP28068 RNU6-777P-201ENST00000364265 104 ntBASIC1.16□□□□□ -2.22
HLA-DMBP28068 RNU6-853P-201ENST00000364306 107 ntBASIC1.16□□□□□ -2.22
HLA-DMBP28068 MIR320A-201ENST00000385302 82 ntBASIC1.16□□□□□ -2.22
HLA-DMBP28068 AL133475.1-201ENST00000404414 305 ntBASIC1.16□□□□□ -2.22
HLA-DMBP28068 RNU6-955P-201ENST00000410497 104 ntBASIC1.16□□□□□ -2.22
HLA-DMBP28068 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.16□□□□□ -2.22
HLA-DMBP28068 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC1.16□□□□□ -2.22
HLA-DMBP28068 AL513185.2-201ENST00000425543 193 ntBASIC1.16□□□□□ -2.22
HLA-DMBP28068 USP9YP11-201ENST00000427537 717 ntBASIC1.16□□□□□ -2.22
HLA-DMBP28068 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC1.16□□□□□ -2.22
HLA-DMBP28068 RPL23AP76-201ENST00000441860 458 ntBASIC1.16□□□□□ -2.22
HLA-DMBP28068 AP000542.1-201ENST00000448473 371 ntBASIC1.16□□□□□ -2.22
HLA-DMBP28068 AC104629.1-201ENST00000494226 508 ntBASIC1.16□□□□□ -2.22
HLA-DMBP28068 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC1.16□□□□□ -2.22
HLA-DMBP28068 RNU6-667P-201ENST00000517186 102 ntBASIC1.16□□□□□ -2.22
HLA-DMBP28068 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.16□□□□□ -2.22
HLA-DMBP28068 DUXAP5-201ENST00000529668 529 ntBASIC1.16□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 122.7 ms