Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC3.02□□□□□ -1.93
LDB3O75112 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.02□□□□□ -1.93
LDB3O75112 AC092747.3-201ENST00000603769 301 ntBASIC3.02□□□□□ -1.93
LDB3O75112 AC080078.3-201ENST00000605407 463 ntBASIC3.02□□□□□ -1.93
LDB3O75112 AL080274.1-201ENST00000605565 220 ntBASIC3.02□□□□□ -1.93
LDB3O75112 AL133215.3-201ENST00000609801 448 ntBASIC3.02□□□□□ -1.93
LDB3O75112 AC012409.4-201ENST00000612923 249 ntBASIC3.02□□□□□ -1.93
LDB3O75112 AL359547.2-201ENST00000615810 418 ntBASIC3.02□□□□□ -1.93
LDB3O75112 AC090132.2-201ENST00000615881 347 ntBASIC3.02□□□□□ -1.93
LDB3O75112 MIR7112-201ENST00000616126 65 ntBASIC3.02□□□□□ -1.93
LDB3O75112 AC091903.1-201ENST00000624322 454 ntBASIC3.02□□□□□ -1.93
LDB3O75112 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.02□□□□□ -1.93
LDB3O75112 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
LDB3O75112 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC3.02□□□□□ -1.93
LDB3O75112 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
LDB3O75112 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.02□□□□□ -1.93
LDB3O75112 MTND5P1-201ENST00000445440 1375 ntBASIC3.01□□□□□ -1.93
LDB3O75112 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.01□□□□□ -1.93
LDB3O75112 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
LDB3O75112 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
LDB3O75112 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.01□□□□□ -1.93
LDB3O75112 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
LDB3O75112 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
LDB3O75112 MIR208A-201ENST00000362287 71 ntBASIC3.01□□□□□ -1.93
LDB3O75112 Y_RNA.146-201ENST00000363549 102 ntBASIC3.01□□□□□ -1.93
LDB3O75112 RNU6-288P-201ENST00000363690 104 ntBASIC3.01□□□□□ -1.93
LDB3O75112 SNORA4.3-201ENST00000365564 137 ntBASIC3.01□□□□□ -1.93
LDB3O75112 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.01□□□□□ -1.93
LDB3O75112 RNU6-190P-201ENST00000384154 102 ntBASIC3.01□□□□□ -1.93
LDB3O75112 RNU6-1297P-201ENST00000384415 104 ntBASIC3.01□□□□□ -1.93
LDB3O75112 U3.19-201ENST00000390893 196 ntBASIC3.01□□□□□ -1.93
LDB3O75112 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
LDB3O75112 RNU6-1077P-201ENST00000410506 102 ntBASIC3.01□□□□□ -1.93
LDB3O75112 RNU6-370P-201ENST00000411008 104 ntBASIC3.01□□□□□ -1.93
LDB3O75112 POLHP1-201ENST00000411806 470 ntBASIC3.01□□□□□ -1.93
LDB3O75112 AC092809.3-201ENST00000415453 231 ntBASIC3.01□□□□□ -1.93
LDB3O75112 NCOR1P3-201ENST00000420479 303 ntBASIC3.01□□□□□ -1.93
LDB3O75112 ACTR3BP6-201ENST00000422332 1241 ntBASIC3.01□□□□□ -1.93
LDB3O75112 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC3.01□□□□□ -1.93
LDB3O75112 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.01□□□□□ -1.93
LDB3O75112 AL590664.1-201ENST00000448065 339 ntBASIC3.01□□□□□ -1.93
LDB3O75112 HMGB3P8-201ENST00000449709 577 ntBASIC3.01□□□□□ -1.93
LDB3O75112 RPS20P22-201ENST00000473700 357 ntBASIC3.01□□□□□ -1.93
LDB3O75112 Y_RNA.654-201ENST00000497848 106 ntBASIC3.01□□□□□ -1.93
LDB3O75112 SRP72-202ENST00000504757 745 ntTSL 2 BASIC3.01□□□□□ -1.93
LDB3O75112 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.01□□□□□ -1.93
LDB3O75112 RNU6-1046P-201ENST00000516538 107 ntBASIC3.01□□□□□ -1.93
LDB3O75112 RNU6-1256P-201ENST00000516539 103 ntBASIC3.01□□□□□ -1.93
LDB3O75112 RNU6-1213P-201ENST00000517075 94 ntBASIC3.01□□□□□ -1.93
LDB3O75112 RNU6-685P-201ENST00000517088 95 ntBASIC3.01□□□□□ -1.93
LDB3O75112 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC3.01□□□□□ -1.93
LDB3O75112 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.01□□□□□ -1.93
LDB3O75112 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC3.01□□□□□ -1.93
LDB3O75112 ATP5F1P5-201ENST00000526403 760 ntBASIC3.01□□□□□ -1.93
LDB3O75112 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC3.01□□□□□ -1.93
LDB3O75112 AP000763.2-201ENST00000540641 163 ntBASIC3.01□□□□□ -1.93
LDB3O75112 AC023510.1-201ENST00000555862 490 ntTSL 2 BASIC3.01□□□□□ -1.93
LDB3O75112 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.01□□□□□ -1.93
LDB3O75112 AC007179.3-201ENST00000604976 235 ntBASIC3.01□□□□□ -1.93
LDB3O75112 uc_338.25-201ENST00000613756 156 ntBASIC3.01□□□□□ -1.93
LDB3O75112 FAM157A-202ENST00000615155 405 ntBASIC3.01□□□□□ -1.93
LDB3O75112 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.01□□□□□ -1.93
LDB3O75112 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.01□□□□□ -1.93
LDB3O75112 AC121333.1-201ENST00000567488 2709 ntBASIC3.01□□□□□ -1.93
LDB3O75112 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.01□□□□□ -1.93
LDB3O75112 MTND4P27-201ENST00000450813 1354 ntBASIC3□□□□□ -1.93
LDB3O75112 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3□□□□□ -1.93
LDB3O75112 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3□□□□□ -1.93
LDB3O75112 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3□□□□□ -1.93
LDB3O75112 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3□□□□□ -1.93
LDB3O75112 Y_RNA.128-201ENST00000363391 112 ntBASIC3□□□□□ -1.93
LDB3O75112 AL592114.1-201ENST00000403842 483 ntBASIC3□□□□□ -1.93
LDB3O75112 RPS12P24-201ENST00000412619 387 ntBASIC3□□□□□ -1.93
LDB3O75112 PMCHL1-202ENST00000423102 261 ntBASIC3□□□□□ -1.93
LDB3O75112 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3□□□□□ -1.93
LDB3O75112 AC091390.3-201ENST00000426478 338 ntBASIC3□□□□□ -1.93
LDB3O75112 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3□□□□□ -1.93
LDB3O75112 AC006028.1-201ENST00000438379 402 ntBASIC3□□□□□ -1.93
LDB3O75112 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC3□□□□□ -1.93
LDB3O75112 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3□□□□□ -1.93
LDB3O75112 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3□□□□□ -1.93
LDB3O75112 MTCO3P10-201ENST00000455912 772 ntBASIC3□□□□□ -1.93
LDB3O75112 RNU7-152P-201ENST00000458982 64 ntBASIC3□□□□□ -1.93
LDB3O75112 SCARNA18-201ENST00000459004 134 ntBASIC3□□□□□ -1.93
LDB3O75112 RPL37P6-201ENST00000460682 294 ntBASIC3□□□□□ -1.93
LDB3O75112 TRBV1-201ENST00000476502 284 ntBASIC3□□□□□ -1.93
LDB3O75112 AL163540.1-201ENST00000485382 386 ntBASIC3□□□□□ -1.93
LDB3O75112 RPL30P5-201ENST00000494923 336 ntBASIC3□□□□□ -1.93
LDB3O75112 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC3□□□□□ -1.93
LDB3O75112 TBCAP3-201ENST00000512475 312 ntBASIC3□□□□□ -1.93
LDB3O75112 RNU6-123P-201ENST00000516163 102 ntBASIC3□□□□□ -1.93
LDB3O75112 RNU1-143P-201ENST00000516296 146 ntBASIC3□□□□□ -1.93
LDB3O75112 RNU6-566P-201ENST00000516790 107 ntBASIC3□□□□□ -1.93
LDB3O75112 AL132780.1-202ENST00000548322 591 ntTSL 4 BASIC3□□□□□ -1.93
LDB3O75112 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC3□□□□□ -1.93
LDB3O75112 AC074050.1-201ENST00000563247 211 ntBASIC3□□□□□ -1.93
LDB3O75112 ATP1B3P1-201ENST00000605365 821 ntBASIC3□□□□□ -1.93
LDB3O75112 AL158032.1-201ENST00000605401 106 ntBASIC3□□□□□ -1.93
LDB3O75112 AL022345.1-201ENST00000607292 135 ntBASIC3□□□□□ -1.93
LDB3O75112 AC022893.3-201ENST00000607665 437 ntBASIC3□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 108.3 ms