Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AL359232.1-201ENST00000556361 442 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXA3O43365 H3F3AP1-201ENST00000559984 334 ntBASIC3.44□□□□□ -1.86
HOXA3O43365 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.44□□□□□ -1.86
HOXA3O43365 RN7SL600P-201ENST00000581811 299 ntBASIC3.44□□□□□ -1.86
HOXA3O43365 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC3.44□□□□□ -1.86
HOXA3O43365 AC006557.5-201ENST00000603126 811 ntBASIC3.44□□□□□ -1.86
HOXA3O43365 FAM27D1-201ENST00000612308 341 ntBASIC3.44□□□□□ -1.86
HOXA3O43365 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
HOXA3O43365 AC007546.2-201ENST00000623996 360 ntBASIC3.44□□□□□ -1.86
HOXA3O43365 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.44□□□□□ -1.86
HOXA3O43365 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC3.44□□□□□ -1.86
HOXA3O43365 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
HOXA3O43365 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
HOXA3O43365 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXA3O43365 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
HOXA3O43365 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HOXA3O43365 RNU6-778P-201ENST00000363269 103 ntBASIC3.43□□□□□ -1.86
HOXA3O43365 RNU6-379P-201ENST00000363813 104 ntBASIC3.43□□□□□ -1.86
HOXA3O43365 RN7SKP280-201ENST00000364196 304 ntBASIC3.43□□□□□ -1.86
HOXA3O43365 MIR23B-201ENST00000384832 97 ntBASIC3.43□□□□□ -1.86
HOXA3O43365 MIR628-201ENST00000385229 95 ntBASIC3.43□□□□□ -1.86
HOXA3O43365 MIR921-201ENST00000401133 56 ntBASIC3.43□□□□□ -1.86
HOXA3O43365 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXA3O43365 AL162151.2-201ENST00000448875 158 ntBASIC3.43□□□□□ -1.86
HOXA3O43365 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXA3O43365 RNU6-408P-201ENST00000515910 100 ntBASIC3.43□□□□□ -1.86
HOXA3O43365 SNORA43.2-201ENST00000516652 128 ntBASIC3.43□□□□□ -1.86
HOXA3O43365 IGHV3-76-201ENST00000522465 295 ntBASIC3.43□□□□□ -1.86
HOXA3O43365 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXA3O43365 AC034105.4-201ENST00000568304 277 ntBASIC3.43□□□□□ -1.86
HOXA3O43365 AC090517.1-201ENST00000569307 266 ntBASIC3.43□□□□□ -1.86
HOXA3O43365 AC078899.3-201ENST00000599065 212 ntBASIC3.43□□□□□ -1.86
HOXA3O43365 AC024153.1-201ENST00000603103 365 ntBASIC3.43□□□□□ -1.86
HOXA3O43365 RAC1P9-201ENST00000604990 392 ntBASIC3.43□□□□□ -1.86
HOXA3O43365 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC3.43□□□□□ -1.86
HOXA3O43365 MIR7154-201ENST00000620673 73 ntBASIC3.43□□□□□ -1.86
HOXA3O43365 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
HOXA3O43365 AC018529.3-201ENST00000624212 2254 ntBASIC3.43□□□□□ -1.86
HOXA3O43365 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.43□□□□□ -1.86
HOXA3O43365 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
HOXA3O43365 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC3.43□□□□□ -1.86
HOXA3O43365 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC3.43□□□□□ -1.86
HOXA3O43365 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC3.42□□□□□ -1.86
HOXA3O43365 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC3.42□□□□□ -1.86
HOXA3O43365 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HOXA3O43365 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HOXA3O43365 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.42□□□□□ -1.86
HOXA3O43365 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HOXA3O43365 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HOXA3O43365 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HOXA3O43365 Y_RNA.64-201ENST00000362845 102 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 RNA5SP307-201ENST00000362863 116 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 RNU6-527P-201ENST00000363425 104 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 RNU6-105P-201ENST00000363909 104 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 RNU6-770P-201ENST00000363929 105 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 RNA5SP130-201ENST00000364431 114 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 RNA5SP513-201ENST00000364648 118 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 Y_RNA.288-201ENST00000364854 92 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 RNU6-898P-201ENST00000365627 104 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 AL359837.1-201ENST00000381357 287 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 RNU1-73P-201ENST00000383971 164 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 Y_RNA.405-201ENST00000383979 100 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 Y_RNA.451-201ENST00000384200 100 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 RNU6-708P-201ENST00000384217 107 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 Y_RNA.524-201ENST00000384564 100 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 Y_RNA.561-201ENST00000384694 100 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 MIR518D-201ENST00000385014 87 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 SNORA12.2-201ENST00000391040 156 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 BTF3L4P2-201ENST00000392798 346 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 MIR190B-201ENST00000401119 79 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 MTCYBP2-201ENST00000407745 171 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 RNU6-847P-201ENST00000411115 108 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 CRYBB2P1-203ENST00000415709 538 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 AL356095.1-201ENST00000417217 199 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 FTH1P6-201ENST00000430768 320 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 MTCO3P29-201ENST00000432119 779 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXA3O43365 AC098831.1-201ENST00000440661 216 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 FCF1P4-201ENST00000448326 183 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 RPL23AP81-201ENST00000455252 467 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 AC104564.1-201ENST00000493028 407 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 AC099522.1-202ENST00000514718 367 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 RNA5SP446-201ENST00000515955 82 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 RNU6-397P-201ENST00000516226 104 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 RNU6-897P-201ENST00000517135 105 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 AC109329.1-201ENST00000518744 317 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 AC107016.1-201ENST00000550463 337 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXA3O43365 MIR4286-201ENST00000580651 93 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 AL390123.1-201ENST00000603216 237 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 MIR6867-201ENST00000610636 67 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 AC034229.5-201ENST00000624258 185 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 AC008785.1-201ENST00000624475 456 ntBASIC3.42□□□□□ -1.86
HOXA3O43365 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC3.42□□□□□ -1.86
HOXA3O43365 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.42□□□□□ -1.86
HOXA3O43365 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HOXA3O43365 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HOXA3O43365 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC3.42□□□□□ -1.86
HOXA3O43365 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC3.42□□□□□ -1.86
HOXA3O43365 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.42□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 124 ms