Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AL356867.1-201ENST00000429623 299 ntBASIC5.34□□□□□ -1.55
VPS9D1Q9Y2B5 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC5.34□□□□□ -1.55
VPS9D1Q9Y2B5 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC5.34□□□□□ -1.55
VPS9D1Q9Y2B5 AP000281.1-201ENST00000444036 316 ntBASIC5.34□□□□□ -1.55
VPS9D1Q9Y2B5 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC5.34□□□□□ -1.55
VPS9D1Q9Y2B5 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC5.34□□□□□ -1.55
VPS9D1Q9Y2B5 AL389915.2-201ENST00000454576 441 ntBASIC5.34□□□□□ -1.55
VPS9D1Q9Y2B5 SCARNA21.2-201ENST00000516600 166 ntBASIC5.34□□□□□ -1.55
VPS9D1Q9Y2B5 AP003730.1-201ENST00000524605 285 ntBASIC5.34□□□□□ -1.55
VPS9D1Q9Y2B5 LINC00933-203ENST00000559812 219 ntBASIC5.34□□□□□ -1.55
VPS9D1Q9Y2B5 AC007012.1-201ENST00000567192 175 ntBASIC5.34□□□□□ -1.55
VPS9D1Q9Y2B5 AC025946.2-201ENST00000603398 234 ntBASIC5.34□□□□□ -1.55
VPS9D1Q9Y2B5 CCT7-217ENST00000626868 249 ntTSL 5 BASIC5.34□□□□□ -1.55
VPS9D1Q9Y2B5 AC018793.1-201ENST00000638166 585 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
VPS9D1Q9Y2B5 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.34□□□□□ -1.55
VPS9D1Q9Y2B5 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
VPS9D1Q9Y2B5 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
VPS9D1Q9Y2B5 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC5.34□□□□□ -1.56
VPS9D1Q9Y2B5 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC5.34□□□□□ -1.56
VPS9D1Q9Y2B5 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC5.34□□□□□ -1.56
VPS9D1Q9Y2B5 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
VPS9D1Q9Y2B5 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
VPS9D1Q9Y2B5 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
VPS9D1Q9Y2B5 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
VPS9D1Q9Y2B5 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
VPS9D1Q9Y2B5 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
VPS9D1Q9Y2B5 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
VPS9D1Q9Y2B5 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
VPS9D1Q9Y2B5 RNU6-978P-201ENST00000364371 103 ntBASIC5.33□□□□□ -1.56
VPS9D1Q9Y2B5 SNORA72-201ENST00000384339 132 ntBASIC5.33□□□□□ -1.56
VPS9D1Q9Y2B5 AL078599.1-201ENST00000402075 293 ntBASIC5.33□□□□□ -1.56
VPS9D1Q9Y2B5 AL445687.1-201ENST00000439946 251 ntBASIC5.33□□□□□ -1.56
VPS9D1Q9Y2B5 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC5.33□□□□□ -1.56
VPS9D1Q9Y2B5 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC5.33□□□□□ -1.56
VPS9D1Q9Y2B5 AC091868.1-201ENST00000508746 304 ntBASIC5.33□□□□□ -1.56
VPS9D1Q9Y2B5 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC5.33□□□□□ -1.56
VPS9D1Q9Y2B5 RNA5SP281-201ENST00000516504 135 ntBASIC5.33□□□□□ -1.56
VPS9D1Q9Y2B5 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC5.33□□□□□ -1.56
VPS9D1Q9Y2B5 AC022404.1-201ENST00000555320 273 ntBASIC5.33□□□□□ -1.56
VPS9D1Q9Y2B5 AC020895.1-201ENST00000595362 272 ntBASIC5.33□□□□□ -1.56
VPS9D1Q9Y2B5 IGLCOR22-2-201ENST00000605398 313 ntBASIC5.33□□□□□ -1.56
VPS9D1Q9Y2B5 RNA5SP440-201ENST00000612665 119 ntBASIC5.33□□□□□ -1.56
VPS9D1Q9Y2B5 RN7SL787P-201ENST00000613000 284 ntBASIC5.33□□□□□ -1.56
VPS9D1Q9Y2B5 HOTTIP_3.1-201ENST00000619957 337 ntBASIC5.33□□□□□ -1.56
VPS9D1Q9Y2B5 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC5.33□□□□□ -1.56
VPS9D1Q9Y2B5 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
VPS9D1Q9Y2B5 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC5.33□□□□□ -1.56
VPS9D1Q9Y2B5 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC5.33□□□□□ -1.56
VPS9D1Q9Y2B5 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
VPS9D1Q9Y2B5 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
VPS9D1Q9Y2B5 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC5.33□□□□□ -1.56
VPS9D1Q9Y2B5 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
VPS9D1Q9Y2B5 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC5.33□□□□□ -1.56
VPS9D1Q9Y2B5 TLK1P1-201ENST00000456760 2440 ntBASIC5.33□□□□□ -1.56
VPS9D1Q9Y2B5 AL450326.2-201ENST00000421913 1962 ntBASIC5.33□□□□□ -1.56
VPS9D1Q9Y2B5 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
VPS9D1Q9Y2B5 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
VPS9D1Q9Y2B5 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC5.32□□□□□ -1.56
VPS9D1Q9Y2B5 AC073073.2-201ENST00000609827 2578 ntBASIC5.32□□□□□ -1.56
VPS9D1Q9Y2B5 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
VPS9D1Q9Y2B5 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
VPS9D1Q9Y2B5 BPHL-201ENST00000380368 797 ntTSL 5 BASIC5.32□□□□□ -1.56
VPS9D1Q9Y2B5 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC5.32□□□□□ -1.56
VPS9D1Q9Y2B5 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
VPS9D1Q9Y2B5 AC244670.1-201ENST00000436879 112 ntBASIC5.32□□□□□ -1.56
VPS9D1Q9Y2B5 RPL39P40-201ENST00000445481 146 ntBASIC5.32□□□□□ -1.56
VPS9D1Q9Y2B5 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC5.32□□□□□ -1.56
VPS9D1Q9Y2B5 RPL23AP14-201ENST00000468281 468 ntBASIC5.32□□□□□ -1.56
VPS9D1Q9Y2B5 SSX6-203ENST00000509958 336 ntTSL 3 BASIC5.32□□□□□ -1.56
VPS9D1Q9Y2B5 RNA5SP291-201ENST00000517222 105 ntBASIC5.32□□□□□ -1.56
VPS9D1Q9Y2B5 AC022790.1-201ENST00000522872 204 ntBASIC5.32□□□□□ -1.56
VPS9D1Q9Y2B5 HMGB1P40-201ENST00000525121 540 ntBASIC5.32□□□□□ -1.56
VPS9D1Q9Y2B5 AP004607.2-201ENST00000533949 322 ntBASIC5.32□□□□□ -1.56
VPS9D1Q9Y2B5 SNORD95-201ENST00000579879 68 ntBASIC5.32□□□□□ -1.56
VPS9D1Q9Y2B5 ARF4P1-201ENST00000605447 541 ntBASIC5.32□□□□□ -1.56
VPS9D1Q9Y2B5 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC5.32□□□□□ -1.56
VPS9D1Q9Y2B5 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
VPS9D1Q9Y2B5 MAPK10-328ENST00000641553 4009 ntBASIC5.32□□□□□ -1.56
VPS9D1Q9Y2B5 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.32□□□□□ -1.56
VPS9D1Q9Y2B5 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
VPS9D1Q9Y2B5 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.32□□□□□ -1.56
VPS9D1Q9Y2B5 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
VPS9D1Q9Y2B5 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
VPS9D1Q9Y2B5 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
VPS9D1Q9Y2B5 RNU6-249P-201ENST00000363016 102 ntBASIC5.31□□□□□ -1.56
VPS9D1Q9Y2B5 Y_RNA.243-201ENST00000364481 109 ntBASIC5.31□□□□□ -1.56
VPS9D1Q9Y2B5 Y_RNA.415-201ENST00000384012 112 ntBASIC5.31□□□□□ -1.56
VPS9D1Q9Y2B5 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
VPS9D1Q9Y2B5 AL590762.2-201ENST00000395798 571 ntBASIC5.31□□□□□ -1.56
VPS9D1Q9Y2B5 RNA5SP225-201ENST00000410874 135 ntBASIC5.31□□□□□ -1.56
VPS9D1Q9Y2B5 TRAPPC2P9-201ENST00000434556 343 ntBASIC5.31□□□□□ -1.56
VPS9D1Q9Y2B5 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC5.31□□□□□ -1.56
VPS9D1Q9Y2B5 RPS4XP2-201ENST00000458402 793 ntBASIC5.31□□□□□ -1.56
VPS9D1Q9Y2B5 RPS26P39-201ENST00000469206 341 ntBASIC5.31□□□□□ -1.56
VPS9D1Q9Y2B5 RPL31P41-201ENST00000477967 372 ntBASIC5.31□□□□□ -1.56
VPS9D1Q9Y2B5 KC877373.1-201ENST00000479066 408 ntBASIC5.31□□□□□ -1.56
VPS9D1Q9Y2B5 RN7SL466P-201ENST00000497546 295 ntBASIC5.31□□□□□ -1.56
VPS9D1Q9Y2B5 RNU6-197P-201ENST00000516680 100 ntBASIC5.31□□□□□ -1.56
VPS9D1Q9Y2B5 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC5.31□□□□□ -1.56
VPS9D1Q9Y2B5 AC000068.2-201ENST00000608816 460 ntBASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 119.2 ms