Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 RNU6-169P-201ENST00000365336 107 ntBASIC2.38□□□□□ -2.03
LHX3Q9UBR4 RN7SKP142-201ENST00000411236 328 ntBASIC2.38□□□□□ -2.03
LHX3Q9UBR4 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC2.38□□□□□ -2.03
LHX3Q9UBR4 AC090960.1-201ENST00000421072 306 ntBASIC2.38□□□□□ -2.03
LHX3Q9UBR4 AC009961.2-201ENST00000435771 251 ntBASIC2.38□□□□□ -2.03
LHX3Q9UBR4 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC2.38□□□□□ -2.03
LHX3Q9UBR4 EEF1B2P7-201ENST00000451177 676 ntBASIC2.38□□□□□ -2.03
LHX3Q9UBR4 AC092001.1-201ENST00000453012 261 ntBASIC2.38□□□□□ -2.03
LHX3Q9UBR4 AL121769.1-201ENST00000469473 401 ntBASIC2.38□□□□□ -2.03
LHX3Q9UBR4 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.38□□□□□ -2.03
LHX3Q9UBR4 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC2.38□□□□□ -2.03
LHX3Q9UBR4 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC2.38□□□□□ -2.03
LHX3Q9UBR4 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.38□□□□□ -2.03
LHX3Q9UBR4 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC2.38□□□□□ -2.03
LHX3Q9UBR4 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.38□□□□□ -2.03
LHX3Q9UBR4 AP002453.2-201ENST00000533503 320 ntBASIC2.38□□□□□ -2.03
LHX3Q9UBR4 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.38□□□□□ -2.03
LHX3Q9UBR4 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC2.38□□□□□ -2.03
LHX3Q9UBR4 NRBF2P1-201ENST00000587407 859 ntBASIC2.38□□□□□ -2.03
LHX3Q9UBR4 AC012409.4-201ENST00000612923 249 ntBASIC2.38□□□□□ -2.03
LHX3Q9UBR4 uc_338.14-201ENST00000613162 166 ntBASIC2.38□□□□□ -2.03
LHX3Q9UBR4 AC080128.1-201ENST00000474389 1917 ntBASIC2.38□□□□□ -2.03
LHX3Q9UBR4 CDC27P3-201ENST00000635418 1910 ntBASIC2.38□□□□□ -2.03
LHX3Q9UBR4 MTND4P27-201ENST00000450813 1354 ntBASIC2.37□□□□□ -2.03
LHX3Q9UBR4 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.37□□□□□ -2.03
LHX3Q9UBR4 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.37□□□□□ -2.03
LHX3Q9UBR4 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.37□□□□□ -2.03
LHX3Q9UBR4 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.37□□□□□ -2.03
LHX3Q9UBR4 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.37□□□□□ -2.03
LHX3Q9UBR4 ANKRD36BP1-202ENST00000604892 1417 ntBASIC2.37□□□□□ -2.03
LHX3Q9UBR4 Y_RNA.22-201ENST00000362492 102 ntBASIC2.37□□□□□ -2.03
LHX3Q9UBR4 SNORA25.6-201ENST00000364121 118 ntBASIC2.37□□□□□ -2.03
LHX3Q9UBR4 RNU6-1280P-201ENST00000365211 107 ntBASIC2.37□□□□□ -2.03
LHX3Q9UBR4 RNU6-898P-201ENST00000365627 104 ntBASIC2.37□□□□□ -2.03
LHX3Q9UBR4 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC2.37□□□□□ -2.03
LHX3Q9UBR4 RNU6-166P-201ENST00000384371 107 ntBASIC2.37□□□□□ -2.03
LHX3Q9UBR4 SNORA24.1-201ENST00000384401 135 ntBASIC2.37□□□□□ -2.03
LHX3Q9UBR4 MIR147B-201ENST00000390185 80 ntBASIC2.37□□□□□ -2.03
LHX3Q9UBR4 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC2.37□□□□□ -2.03
LHX3Q9UBR4 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC2.37□□□□□ -2.03
LHX3Q9UBR4 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC2.37□□□□□ -2.03
LHX3Q9UBR4 MTND2P4-201ENST00000445034 1004 ntBASIC2.37□□□□□ -2.03
LHX3Q9UBR4 RPL23AP20-201ENST00000447965 421 ntBASIC2.37□□□□□ -2.03
LHX3Q9UBR4 AP000705.1-201ENST00000454567 350 ntBASIC2.37□□□□□ -2.03
LHX3Q9UBR4 BTF3P15-201ENST00000455606 336 ntBASIC2.37□□□□□ -2.03
LHX3Q9UBR4 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC2.37□□□□□ -2.03
LHX3Q9UBR4 AL441985.1-201ENST00000457727 251 ntBASIC2.37□□□□□ -2.03
LHX3Q9UBR4 AC023194.1-201ENST00000493084 308 ntBASIC2.37□□□□□ -2.03
LHX3Q9UBR4 AC098799.2-201ENST00000509466 868 ntBASIC2.37□□□□□ -2.03
LHX3Q9UBR4 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC2.37□□□□□ -2.03
LHX3Q9UBR4 RNU6-123P-201ENST00000516163 102 ntBASIC2.37□□□□□ -2.03
LHX3Q9UBR4 SCARNA24.1-201ENST00000516465 137 ntBASIC2.37□□□□□ -2.03
LHX3Q9UBR4 RNA5SP24-201ENST00000516478 95 ntBASIC2.37□□□□□ -2.03
LHX3Q9UBR4 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC2.37□□□□□ -2.03
LHX3Q9UBR4 MTND2P38-201ENST00000522536 667 ntBASIC2.37□□□□□ -2.03
LHX3Q9UBR4 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC2.37□□□□□ -2.03
LHX3Q9UBR4 AL356575.1-201ENST00000603008 283 ntBASIC2.37□□□□□ -2.03
LHX3Q9UBR4 AL645944.1-201ENST00000603857 493 ntBASIC2.37□□□□□ -2.03
LHX3Q9UBR4 AC090578.1-201ENST00000604955 591 ntBASIC2.37□□□□□ -2.03
LHX3Q9UBR4 AC126118.1-201ENST00000607744 628 ntBASIC2.37□□□□□ -2.03
LHX3Q9UBR4 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.37□□□□□ -2.03
LHX3Q9UBR4 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.37□□□□□ -2.03
LHX3Q9UBR4 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC2.37□□□□□ -2.03
LHX3Q9UBR4 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.37□□□□□ -2.03
LHX3Q9UBR4 MTND5P30-201ENST00000452896 1731 ntBASIC2.37□□□□□ -2.03
LHX3Q9UBR4 AC135776.4-201ENST00000624300 1904 ntBASIC2.36□□□□□ -2.03
LHX3Q9UBR4 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.36□□□□□ -2.03
LHX3Q9UBR4 ELL2P3-201ENST00000457883 1602 ntBASIC2.36□□□□□ -2.03
LHX3Q9UBR4 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.36□□□□□ -2.03
LHX3Q9UBR4 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
LHX3Q9UBR4 Y_RNA.201-201ENST00000364052 96 ntBASIC2.36□□□□□ -2.03
LHX3Q9UBR4 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC2.36□□□□□ -2.03
LHX3Q9UBR4 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC2.36□□□□□ -2.03
LHX3Q9UBR4 AL096701.2-201ENST00000416920 238 ntBASIC2.36□□□□□ -2.03
LHX3Q9UBR4 AL160275.3-201ENST00000423876 471 ntBASIC2.36□□□□□ -2.03
LHX3Q9UBR4 MICF-203ENST00000432679 129 ntBASIC2.36□□□□□ -2.03
LHX3Q9UBR4 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC2.36□□□□□ -2.03
LHX3Q9UBR4 RGS5-217ENST00000451759 835 ntTSL 3 BASIC2.36□□□□□ -2.03
LHX3Q9UBR4 AC116655.1-201ENST00000508324 901 ntBASIC2.36□□□□□ -2.03
LHX3Q9UBR4 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC2.36□□□□□ -2.03
LHX3Q9UBR4 RNA5SP281-201ENST00000516504 135 ntBASIC2.36□□□□□ -2.03
LHX3Q9UBR4 Y_RNA.695-201ENST00000516715 107 ntBASIC2.36□□□□□ -2.03
LHX3Q9UBR4 SNORA18.6-201ENST00000516792 115 ntBASIC2.36□□□□□ -2.03
LHX3Q9UBR4 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.36□□□□□ -2.03
LHX3Q9UBR4 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC2.36□□□□□ -2.03
LHX3Q9UBR4 MIR3670-2-201ENST00000582974 65 ntBASIC2.36□□□□□ -2.03
LHX3Q9UBR4 MIR5007-201ENST00000583098 95 ntBASIC2.36□□□□□ -2.03
LHX3Q9UBR4 MIR3670-1-201ENST00000584160 65 ntBASIC2.36□□□□□ -2.03
LHX3Q9UBR4 MIR3670-3-201ENST00000584855 65 ntBASIC2.36□□□□□ -2.03
LHX3Q9UBR4 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.36□□□□□ -2.03
LHX3Q9UBR4 AP000787.2-201ENST00000604432 568 ntBASIC2.36□□□□□ -2.03
LHX3Q9UBR4 AL022154.1-201ENST00000604698 785 ntBASIC2.36□□□□□ -2.03
LHX3Q9UBR4 MIR3670-4-201ENST00000612260 65 ntBASIC2.36□□□□□ -2.03
LHX3Q9UBR4 MIR7157-201ENST00000635801 60 ntBASIC2.36□□□□□ -2.03
LHX3Q9UBR4 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
LHX3Q9UBR4 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
LHX3Q9UBR4 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
LHX3Q9UBR4 MIR6073-201ENST00000352083 89 ntBASIC2.35□□□□□ -2.03
LHX3Q9UBR4 SNORD114-30-201ENST00000364448 72 ntBASIC2.35□□□□□ -2.03
LHX3Q9UBR4 RNU1-51P-201ENST00000365345 176 ntBASIC2.35□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 90.8 ms