Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC1.06□□□□□ -2.24
SCN3AQ9NY46 MTCO3P45-201ENST00000443036 613 ntBASIC1.06□□□□□ -2.24
SCN3AQ9NY46 AC244505.3-201ENST00000454598 187 ntBASIC1.06□□□□□ -2.24
SCN3AQ9NY46 AC087884.1-201ENST00000469738 328 ntBASIC1.06□□□□□ -2.24
SCN3AQ9NY46 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC1.06□□□□□ -2.24
SCN3AQ9NY46 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC1.06□□□□□ -2.24
SCN3AQ9NY46 AC109329.1-201ENST00000518744 317 ntBASIC1.06□□□□□ -2.24
SCN3AQ9NY46 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC1.06□□□□□ -2.24
SCN3AQ9NY46 AC135279.1-201ENST00000543493 504 ntBASIC1.06□□□□□ -2.24
SCN3AQ9NY46 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC1.06□□□□□ -2.24
SCN3AQ9NY46 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC1.06□□□□□ -2.24
SCN3AQ9NY46 AC091965.5-201ENST00000624785 342 ntBASIC1.06□□□□□ -2.24
SCN3AQ9NY46 AC019226.1-201ENST00000625666 515 ntBASIC1.06□□□□□ -2.24
SCN3AQ9NY46 RNU6-1207P-201ENST00000384343 107 ntBASIC1.05□□□□□ -2.24
SCN3AQ9NY46 MIR29C-201ENST00000385231 88 ntBASIC1.05□□□□□ -2.24
SCN3AQ9NY46 HMGB1P17-201ENST00000403495 628 ntBASIC1.05□□□□□ -2.24
SCN3AQ9NY46 MTND3P20-201ENST00000407663 186 ntBASIC1.05□□□□□ -2.24
SCN3AQ9NY46 AC078974.1-201ENST00000411597 223 ntBASIC1.05□□□□□ -2.24
SCN3AQ9NY46 MTCO1P3-201ENST00000429327 192 ntBASIC1.05□□□□□ -2.24
SCN3AQ9NY46 AC002381.1-201ENST00000447049 280 ntBASIC1.05□□□□□ -2.24
SCN3AQ9NY46 AC020550.1-201ENST00000447385 163 ntBASIC1.05□□□□□ -2.24
SCN3AQ9NY46 AC245517.4-201ENST00000448601 281 ntBASIC1.05□□□□□ -2.24
SCN3AQ9NY46 AC005297.2-201ENST00000450430 606 ntBASIC1.05□□□□□ -2.24
SCN3AQ9NY46 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC1.05□□□□□ -2.24
SCN3AQ9NY46 RNU6-362P-201ENST00000516736 90 ntBASIC1.05□□□□□ -2.24
SCN3AQ9NY46 CA1-215ENST00000522389 551 ntTSL 3 BASIC1.05□□□□□ -2.24
SCN3AQ9NY46 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC1.05□□□□□ -2.24
SCN3AQ9NY46 VBP1-203ENST00000535916 944 ntTSL 2 BASIC1.05□□□□□ -2.24
SCN3AQ9NY46 AC008015.1-201ENST00000555505 465 ntBASIC1.05□□□□□ -2.24
SCN3AQ9NY46 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
SCN3AQ9NY46 AL078605.1-201ENST00000603529 500 ntBASIC1.05□□□□□ -2.24
SCN3AQ9NY46 ELOCP5-201ENST00000604924 333 ntBASIC1.05□□□□□ -2.24
SCN3AQ9NY46 AC016925.2-201ENST00000605108 242 ntBASIC1.05□□□□□ -2.24
SCN3AQ9NY46 AC239868.4-201ENST00000608318 671 ntBASIC1.05□□□□□ -2.24
SCN3AQ9NY46 AL603758.1-201ENST00000618654 241 ntBASIC1.05□□□□□ -2.24
SCN3AQ9NY46 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.05□□□□□ -2.24
SCN3AQ9NY46 MIR1322-201ENST00000638013 71 ntBASIC1.05□□□□□ -2.24
SCN3AQ9NY46 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
SCN3AQ9NY46 Y_RNA.327-201ENST00000365201 102 ntBASIC1.05□□□□□ -2.24
SCN3AQ9NY46 MIR676-201ENST00000390702 67 ntBASIC1.05□□□□□ -2.24
SCN3AQ9NY46 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC1.05□□□□□ -2.24
SCN3AQ9NY46 MTCO2P5-201ENST00000422621 426 ntBASIC1.05□□□□□ -2.24
SCN3AQ9NY46 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC1.05□□□□□ -2.24
SCN3AQ9NY46 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.05□□□□□ -2.24
SCN3AQ9NY46 MTND2P3-201ENST00000452458 470 ntBASIC1.05□□□□□ -2.24
SCN3AQ9NY46 AC018437.1-201ENST00000492214 406 ntBASIC1.05□□□□□ -2.24
SCN3AQ9NY46 AKIRIN2P1-201ENST00000505898 352 ntBASIC1.05□□□□□ -2.24
SCN3AQ9NY46 AC096745.1-201ENST00000509945 370 ntBASIC1.05□□□□□ -2.24
SCN3AQ9NY46 RNA5SP480-201ENST00000516840 109 ntBASIC1.05□□□□□ -2.24
SCN3AQ9NY46 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC1.05□□□□□ -2.24
SCN3AQ9NY46 DEFB131D-201ENST00000526803 184 ntBASIC1.05□□□□□ -2.24
SCN3AQ9NY46 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC1.05□□□□□ -2.24
SCN3AQ9NY46 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC1.05□□□□□ -2.24
SCN3AQ9NY46 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC1.05□□□□□ -2.24
SCN3AQ9NY46 MIR5708-201ENST00000579723 85 ntBASIC1.05□□□□□ -2.24
SCN3AQ9NY46 AP000403.1-201ENST00000603349 851 ntBASIC1.05□□□□□ -2.24
SCN3AQ9NY46 AC009974.1-201ENST00000608881 455 ntBASIC1.05□□□□□ -2.24
SCN3AQ9NY46 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC1.05□□□□□ -2.24
SCN3AQ9NY46 MIR6767-201ENST00000637302 66 ntBASIC1.05□□□□□ -2.24
SCN3AQ9NY46 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
SCN3AQ9NY46 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC1.04□□□□□ -2.24
SCN3AQ9NY46 RNU6-28P-201ENST00000362378 107 ntBASIC1.04□□□□□ -2.24
SCN3AQ9NY46 RNU6-354P-201ENST00000383862 107 ntBASIC1.04□□□□□ -2.24
SCN3AQ9NY46 RNU6-1032P-201ENST00000384100 107 ntBASIC1.04□□□□□ -2.24
SCN3AQ9NY46 RNU6-610P-201ENST00000384264 107 ntBASIC1.04□□□□□ -2.24
SCN3AQ9NY46 RNU6-1122P-201ENST00000384449 107 ntBASIC1.04□□□□□ -2.24
SCN3AQ9NY46 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.04□□□□□ -2.24
SCN3AQ9NY46 USP9YP24-201ENST00000434374 697 ntBASIC1.04□□□□□ -2.24
SCN3AQ9NY46 RSL24D1P8-201ENST00000434442 492 ntBASIC1.04□□□□□ -2.24
SCN3AQ9NY46 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
SCN3AQ9NY46 MTATP6P30-201ENST00000443540 664 ntBASIC1.04□□□□□ -2.24
SCN3AQ9NY46 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC1.04□□□□□ -2.24
SCN3AQ9NY46 snoU13.8-201ENST00000458890 104 ntBASIC1.04□□□□□ -2.24
SCN3AQ9NY46 AC008834.1-201ENST00000511612 175 ntBASIC1.04□□□□□ -2.24
SCN3AQ9NY46 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC1.04□□□□□ -2.24
SCN3AQ9NY46 AP001189.2-201ENST00000527320 189 ntBASIC1.04□□□□□ -2.24
SCN3AQ9NY46 DUXAP5-201ENST00000529668 529 ntBASIC1.04□□□□□ -2.24
SCN3AQ9NY46 AL356432.3-201ENST00000568952 465 ntBASIC1.04□□□□□ -2.24
SCN3AQ9NY46 AL353997.4-201ENST00000586196 166 ntBASIC1.04□□□□□ -2.24
SCN3AQ9NY46 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC1.04□□□□□ -2.24
SCN3AQ9NY46 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC1.04□□□□□ -2.24
SCN3AQ9NY46 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.03□□□□□ -2.24
SCN3AQ9NY46 U8.14-201ENST00000390843 143 ntBASIC1.03□□□□□ -2.24
SCN3AQ9NY46 RNU11-3P-201ENST00000391111 133 ntBASIC1.03□□□□□ -2.24
SCN3AQ9NY46 HMGN2P39-201ENST00000398005 273 ntBASIC1.03□□□□□ -2.24
SCN3AQ9NY46 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC1.03□□□□□ -2.24
SCN3AQ9NY46 USP9YP21-201ENST00000420603 432 ntBASIC1.03□□□□□ -2.24
SCN3AQ9NY46 MTND1P31-201ENST00000449206 961 ntBASIC1.03□□□□□ -2.24
SCN3AQ9NY46 RPL18AP17-201ENST00000455326 198 ntBASIC1.03□□□□□ -2.24
SCN3AQ9NY46 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.03□□□□□ -2.24
SCN3AQ9NY46 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC1.03□□□□□ -2.24
SCN3AQ9NY46 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC1.03□□□□□ -2.24
SCN3AQ9NY46 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC1.03□□□□□ -2.24
SCN3AQ9NY46 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC1.03□□□□□ -2.24
SCN3AQ9NY46 AL133445.2-201ENST00000611191 527 ntBASIC1.03□□□□□ -2.24
SCN3AQ9NY46 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC1.03□□□□□ -2.24
SCN3AQ9NY46 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.03□□□□□ -2.24
SCN3AQ9NY46 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.03□□□□□ -2.24
SCN3AQ9NY46 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC1.03□□□□□ -2.25
SCN3AQ9NY46 SNORD114-22-201ENST00000365423 72 ntBASIC1.03□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms