Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 OR1M4P-201ENST00000589199 287 ntBASIC3.67□□□□□ -1.82
TDP1Q9NUW8 ELOCP5-201ENST00000604924 333 ntBASIC3.67□□□□□ -1.82
TDP1Q9NUW8 AC123912.5-201ENST00000605470 343 ntBASIC3.67□□□□□ -1.82
TDP1Q9NUW8 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC3.67□□□□□ -1.82
TDP1Q9NUW8 AC084781.2-201ENST00000615568 161 ntBASIC3.67□□□□□ -1.82
TDP1Q9NUW8 MIR8058-201ENST00000615737 89 ntBASIC3.67□□□□□ -1.82
TDP1Q9NUW8 AC010378.1-201ENST00000619270 362 ntBASIC3.67□□□□□ -1.82
TDP1Q9NUW8 AL732372.2-225ENST00000642124 456 ntBASIC3.67□□□□□ -1.82
TDP1Q9NUW8 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.67□□□□□ -1.82
TDP1Q9NUW8 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
TDP1Q9NUW8 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
TDP1Q9NUW8 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
TDP1Q9NUW8 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC3.66□□□□□ -1.82
TDP1Q9NUW8 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
TDP1Q9NUW8 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
TDP1Q9NUW8 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.66□□□□□ -1.82
TDP1Q9NUW8 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
TDP1Q9NUW8 AC007656.2-201ENST00000624902 4547 ntBASIC3.66□□□□□ -1.82
TDP1Q9NUW8 Y_RNA.315-201ENST00000365117 102 ntBASIC3.66□□□□□ -1.82
TDP1Q9NUW8 RNU6-1329P-201ENST00000365664 107 ntBASIC3.66□□□□□ -1.82
TDP1Q9NUW8 RNU6-166P-201ENST00000384371 107 ntBASIC3.66□□□□□ -1.82
TDP1Q9NUW8 RNU6-601P-201ENST00000384540 107 ntBASIC3.66□□□□□ -1.82
TDP1Q9NUW8 SNORD73A-201ENST00000386062 65 ntBASIC3.66□□□□□ -1.82
TDP1Q9NUW8 SNORD17-201ENST00000390930 237 ntBASIC3.66□□□□□ -1.82
TDP1Q9NUW8 Y_RNA.579-201ENST00000390939 94 ntBASIC3.66□□□□□ -1.82
TDP1Q9NUW8 AL391417.1-201ENST00000404100 426 ntBASIC3.66□□□□□ -1.82
TDP1Q9NUW8 AL591034.1-201ENST00000407447 340 ntBASIC3.66□□□□□ -1.82
TDP1Q9NUW8 RNA5SP120-201ENST00000410900 112 ntBASIC3.66□□□□□ -1.82
TDP1Q9NUW8 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.66□□□□□ -1.82
TDP1Q9NUW8 TMEM167AP1-201ENST00000423409 219 ntBASIC3.66□□□□□ -1.82
TDP1Q9NUW8 AC007560.1-201ENST00000426912 237 ntBASIC3.66□□□□□ -1.82
TDP1Q9NUW8 MTCO2P12-201ENST00000427426 682 ntBASIC3.66□□□□□ -1.82
TDP1Q9NUW8 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
TDP1Q9NUW8 AL627311.1-201ENST00000431514 115 ntBASIC3.66□□□□□ -1.82
TDP1Q9NUW8 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.66□□□□□ -1.82
TDP1Q9NUW8 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC3.66□□□□□ -1.82
TDP1Q9NUW8 AC092798.1-201ENST00000458542 409 ntBASIC3.66□□□□□ -1.82
TDP1Q9NUW8 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC3.66□□□□□ -1.82
TDP1Q9NUW8 RNU2-27P-201ENST00000516185 142 ntBASIC3.66□□□□□ -1.82
TDP1Q9NUW8 RNU6-579P-201ENST00000516879 102 ntBASIC3.66□□□□□ -1.82
TDP1Q9NUW8 AL360157.1-201ENST00000565962 87 ntBASIC3.66□□□□□ -1.82
TDP1Q9NUW8 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.66□□□□□ -1.82
TDP1Q9NUW8 AC020914.4-201ENST00000597690 277 ntBASIC3.66□□□□□ -1.82
TDP1Q9NUW8 AC110741.2-201ENST00000605278 268 ntBASIC3.66□□□□□ -1.82
TDP1Q9NUW8 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.66□□□□□ -1.82
TDP1Q9NUW8 TEX41-265ENST00000627785 704 ntTSL 5 BASIC3.66□□□□□ -1.82
TDP1Q9NUW8 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
TDP1Q9NUW8 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
TDP1Q9NUW8 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.66□□□□□ -1.82
TDP1Q9NUW8 ZNF807-201ENST00000328088 1707 ntBASIC3.66□□□□□ -1.82
TDP1Q9NUW8 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.66□□□□□ -1.82
TDP1Q9NUW8 ZNF736P3Y-201ENST00000428264 1465 ntBASIC3.66□□□□□ -1.82
TDP1Q9NUW8 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.66□□□□□ -1.82
TDP1Q9NUW8 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
TDP1Q9NUW8 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.65□□□□□ -1.82
TDP1Q9NUW8 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.65□□□□□ -1.82
TDP1Q9NUW8 AC022336.2-201ENST00000568966 2538 ntBASIC3.65□□□□□ -1.83
TDP1Q9NUW8 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC3.65□□□□□ -1.83
TDP1Q9NUW8 RNU6-1227P-201ENST00000383981 107 ntBASIC3.65□□□□□ -1.83
TDP1Q9NUW8 RNU6-43P-201ENST00000384302 107 ntBASIC3.65□□□□□ -1.83
TDP1Q9NUW8 MIR10A-201ENST00000385043 110 ntBASIC3.65□□□□□ -1.83
TDP1Q9NUW8 MIR1302-11-201ENST00000408051 138 ntBASIC3.65□□□□□ -1.83
TDP1Q9NUW8 MIR1302-9-201ENST00000408365 138 ntBASIC3.65□□□□□ -1.83
TDP1Q9NUW8 MIR1302-10-201ENST00000408734 138 ntBASIC3.65□□□□□ -1.83
TDP1Q9NUW8 PGBD4P6-201ENST00000421501 610 ntBASIC3.65□□□□□ -1.83
TDP1Q9NUW8 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC3.65□□□□□ -1.83
TDP1Q9NUW8 UBE2V1P4-201ENST00000425374 344 ntBASIC3.65□□□□□ -1.83
TDP1Q9NUW8 AC098614.2-201ENST00000426040 255 ntBASIC3.65□□□□□ -1.83
TDP1Q9NUW8 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.65□□□□□ -1.83
TDP1Q9NUW8 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC3.65□□□□□ -1.83
TDP1Q9NUW8 AL078601.1-201ENST00000444542 271 ntBASIC3.65□□□□□ -1.83
TDP1Q9NUW8 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC3.65□□□□□ -1.83
TDP1Q9NUW8 RNA5SP310-201ENST00000459084 116 ntBASIC3.65□□□□□ -1.83
TDP1Q9NUW8 RN7SL807P-201ENST00000470923 297 ntBASIC3.65□□□□□ -1.83
TDP1Q9NUW8 RPL7P47-201ENST00000497299 556 ntBASIC3.65□□□□□ -1.83
TDP1Q9NUW8 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC3.65□□□□□ -1.83
TDP1Q9NUW8 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC3.65□□□□□ -1.83
TDP1Q9NUW8 AC104576.1-201ENST00000524225 88 ntBASIC3.65□□□□□ -1.83
TDP1Q9NUW8 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.65□□□□□ -1.83
TDP1Q9NUW8 RGS4-209ENST00000531057 544 ntTSL 4 BASIC3.65□□□□□ -1.83
TDP1Q9NUW8 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
TDP1Q9NUW8 HMGB1P14-201ENST00000557424 591 ntBASIC3.65□□□□□ -1.83
TDP1Q9NUW8 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC3.65□□□□□ -1.83
TDP1Q9NUW8 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC3.65□□□□□ -1.83
TDP1Q9NUW8 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.65□□□□□ -1.83
TDP1Q9NUW8 HMGB1P50-201ENST00000605814 607 ntBASIC3.65□□□□□ -1.83
TDP1Q9NUW8 MIR1302-2-201ENST00000607096 138 ntBASIC3.65□□□□□ -1.83
TDP1Q9NUW8 MIR6128-201ENST00000615528 109 ntBASIC3.65□□□□□ -1.83
TDP1Q9NUW8 ATP5A1P2-202ENST00000616464 443 ntBASIC3.65□□□□□ -1.83
TDP1Q9NUW8 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC3.65□□□□□ -1.83
TDP1Q9NUW8 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC3.65□□□□□ -1.83
TDP1Q9NUW8 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.65□□□□□ -1.83
TDP1Q9NUW8 MIR3651-201ENST00000630427 90 ntBASIC3.65□□□□□ -1.83
TDP1Q9NUW8 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.65□□□□□ -1.83
TDP1Q9NUW8 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.83
TDP1Q9NUW8 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
TDP1Q9NUW8 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
TDP1Q9NUW8 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.65□□□□□ -1.83
TDP1Q9NUW8 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.65□□□□□ -1.83
TDP1Q9NUW8 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 159 ms