Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.94□□□□□ -1.78
TRIM39Q9HCM9 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.94□□□□□ -1.78
TRIM39Q9HCM9 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
TRIM39Q9HCM9 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC3.93□□□□□ -1.78
TRIM39Q9HCM9 AC007823.1-201ENST00000569932 1566 ntBASIC3.93□□□□□ -1.78
TRIM39Q9HCM9 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.93□□□□□ -1.78
TRIM39Q9HCM9 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC3.93□□□□□ -1.78
TRIM39Q9HCM9 AC106871.1-201ENST00000568324 3102 ntBASIC3.93□□□□□ -1.78
TRIM39Q9HCM9 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
TRIM39Q9HCM9 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.93□□□□□ -1.78
TRIM39Q9HCM9 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
TRIM39Q9HCM9 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
TRIM39Q9HCM9 AC117470.1-201ENST00000381974 330 ntBASIC3.93□□□□□ -1.78
TRIM39Q9HCM9 RPL23AP82-202ENST00000427528 469 ntBASIC3.93□□□□□ -1.78
TRIM39Q9HCM9 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC3.93□□□□□ -1.78
TRIM39Q9HCM9 SNORA71B-202ENST00000439232 272 ntBASIC3.93□□□□□ -1.78
TRIM39Q9HCM9 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC3.93□□□□□ -1.78
TRIM39Q9HCM9 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
TRIM39Q9HCM9 PPIAP15-201ENST00000479662 484 ntBASIC3.93□□□□□ -1.78
TRIM39Q9HCM9 AC074033.2-201ENST00000480669 535 ntTSL 3 BASIC3.93□□□□□ -1.78
TRIM39Q9HCM9 UBE2CP3-201ENST00000502715 450 ntBASIC3.93□□□□□ -1.78
TRIM39Q9HCM9 AC020593.1-201ENST00000507399 299 ntBASIC3.93□□□□□ -1.78
TRIM39Q9HCM9 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC3.93□□□□□ -1.78
TRIM39Q9HCM9 AC120057.2-201ENST00000571520 271 ntBASIC3.93□□□□□ -1.78
TRIM39Q9HCM9 MTCO3P13-201ENST00000577757 781 ntBASIC3.93□□□□□ -1.78
TRIM39Q9HCM9 AC091167.4-201ENST00000605079 184 ntBASIC3.93□□□□□ -1.78
TRIM39Q9HCM9 AC008962.1-201ENST00000605729 304 ntBASIC3.93□□□□□ -1.78
TRIM39Q9HCM9 AL773545.4-201ENST00000637262 310 ntBASIC3.93□□□□□ -1.78
TRIM39Q9HCM9 AL513478.4-201ENST00000641636 310 ntBASIC3.93□□□□□ -1.78
TRIM39Q9HCM9 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
TRIM39Q9HCM9 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.93□□□□□ -1.78
TRIM39Q9HCM9 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
TRIM39Q9HCM9 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.93□□□□□ -1.78
TRIM39Q9HCM9 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
TRIM39Q9HCM9 HSPA8P1-201ENST00000425843 1833 ntBASIC3.93□□□□□ -1.78
TRIM39Q9HCM9 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
TRIM39Q9HCM9 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.92□□□□□ -1.78
TRIM39Q9HCM9 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.92□□□□□ -1.78
TRIM39Q9HCM9 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.92□□□□□ -1.78
TRIM39Q9HCM9 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
TRIM39Q9HCM9 RNU6-490P-201ENST00000362985 107 ntBASIC3.92□□□□□ -1.78
TRIM39Q9HCM9 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.92□□□□□ -1.78
TRIM39Q9HCM9 RNA5SP399-201ENST00000364003 117 ntBASIC3.92□□□□□ -1.78
TRIM39Q9HCM9 RNU6-1317P-201ENST00000364582 104 ntBASIC3.92□□□□□ -1.78
TRIM39Q9HCM9 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
TRIM39Q9HCM9 AC099548.1-201ENST00000421443 426 ntBASIC3.92□□□□□ -1.78
TRIM39Q9HCM9 AC087650.1-201ENST00000431445 468 ntBASIC3.92□□□□□ -1.78
TRIM39Q9HCM9 AL137792.2-201ENST00000443484 235 ntBASIC3.92□□□□□ -1.78
TRIM39Q9HCM9 FTH1P25-201ENST00000447665 469 ntBASIC3.92□□□□□ -1.78
TRIM39Q9HCM9 RN7SL132P-201ENST00000478131 296 ntBASIC3.92□□□□□ -1.78
TRIM39Q9HCM9 RNU6-470P-201ENST00000515954 104 ntBASIC3.92□□□□□ -1.78
TRIM39Q9HCM9 SCARNA16.2-201ENST00000516520 172 ntBASIC3.92□□□□□ -1.78
TRIM39Q9HCM9 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC3.92□□□□□ -1.78
TRIM39Q9HCM9 YPEL5P3-201ENST00000547227 352 ntBASIC3.92□□□□□ -1.78
TRIM39Q9HCM9 AC103996.1-201ENST00000555468 102 ntBASIC3.92□□□□□ -1.78
TRIM39Q9HCM9 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.92□□□□□ -1.78
TRIM39Q9HCM9 CPDP1-201ENST00000579660 283 ntBASIC3.92□□□□□ -1.78
TRIM39Q9HCM9 AC016925.2-201ENST00000605108 242 ntBASIC3.92□□□□□ -1.78
TRIM39Q9HCM9 U4.7-201ENST00000638126 106 ntBASIC3.92□□□□□ -1.78
TRIM39Q9HCM9 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
TRIM39Q9HCM9 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.92□□□□□ -1.78
TRIM39Q9HCM9 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC3.92□□□□□ -1.78
TRIM39Q9HCM9 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
TRIM39Q9HCM9 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
TRIM39Q9HCM9 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.91□□□□□ -1.78
TRIM39Q9HCM9 RNU6-78P-201ENST00000362897 107 ntBASIC3.91□□□□□ -1.78
TRIM39Q9HCM9 RNU6-1059P-201ENST00000363752 98 ntBASIC3.91□□□□□ -1.78
TRIM39Q9HCM9 RN7SKP280-201ENST00000364196 304 ntBASIC3.91□□□□□ -1.78
TRIM39Q9HCM9 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
TRIM39Q9HCM9 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
TRIM39Q9HCM9 RNU6-213P-201ENST00000384051 104 ntBASIC3.91□□□□□ -1.78
TRIM39Q9HCM9 RNU1-89P-201ENST00000384592 164 ntBASIC3.91□□□□□ -1.78
TRIM39Q9HCM9 SNORA41-201ENST00000384675 132 ntBASIC3.91□□□□□ -1.78
TRIM39Q9HCM9 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC3.91□□□□□ -1.78
TRIM39Q9HCM9 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC3.91□□□□□ -1.78
TRIM39Q9HCM9 AC013470.1-201ENST00000453438 462 ntBASIC3.91□□□□□ -1.78
TRIM39Q9HCM9 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC3.91□□□□□ -1.78
TRIM39Q9HCM9 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.91□□□□□ -1.78
TRIM39Q9HCM9 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC3.91□□□□□ -1.78
TRIM39Q9HCM9 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.91□□□□□ -1.78
TRIM39Q9HCM9 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC3.91□□□□□ -1.78
TRIM39Q9HCM9 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.91□□□□□ -1.78
TRIM39Q9HCM9 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
TRIM39Q9HCM9 AF127577.6-201ENST00000623352 2191 ntBASIC3.91□□□□□ -1.78
TRIM39Q9HCM9 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC3.91□□□□□ -1.78
TRIM39Q9HCM9 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC3.91□□□□□ -1.78
TRIM39Q9HCM9 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
TRIM39Q9HCM9 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
TRIM39Q9HCM9 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
TRIM39Q9HCM9 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
TRIM39Q9HCM9 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.78
TRIM39Q9HCM9 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.9□□□□□ -1.78
TRIM39Q9HCM9 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 RNU6-1115P-201ENST00000362490 106 ntBASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 Y_RNA.28-201ENST00000362554 111 ntBASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 RNA5SP295-201ENST00000362655 121 ntBASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 Y_RNA.132-201ENST00000363421 102 ntBASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 SNORA33.2-201ENST00000365413 134 ntBASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 RNU6-898P-201ENST00000365627 104 ntBASIC3.9□□□□□ -1.79
TRIM39Q9HCM9 RNU6-639P-201ENST00000384074 107 ntBASIC3.9□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms