Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC1.76□□□□□ -2.13
USP42Q9H9J4 MIR3660-201ENST00000584845 100 ntBASIC1.76□□□□□ -2.13
USP42Q9H9J4 AL353997.4-201ENST00000586196 166 ntBASIC1.76□□□□□ -2.13
USP42Q9H9J4 AL021368.1-201ENST00000607490 540 ntBASIC1.76□□□□□ -2.13
USP42Q9H9J4 AC068880.4-201ENST00000623082 495 ntBASIC1.76□□□□□ -2.13
USP42Q9H9J4 AL133216.2-202ENST00000634512 349 ntBASIC1.76□□□□□ -2.13
USP42Q9H9J4 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC1.76□□□□□ -2.13
USP42Q9H9J4 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.76□□□□□ -2.13
USP42Q9H9J4 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
USP42Q9H9J4 AP000560.1-201ENST00000624150 1937 ntBASIC1.75□□□□□ -2.13
USP42Q9H9J4 RNU6-512P-201ENST00000364438 103 ntBASIC1.75□□□□□ -2.13
USP42Q9H9J4 U3.13-201ENST00000364804 214 ntBASIC1.75□□□□□ -2.13
USP42Q9H9J4 MIR7-2-201ENST00000384970 110 ntBASIC1.75□□□□□ -2.13
USP42Q9H9J4 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC1.75□□□□□ -2.13
USP42Q9H9J4 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.75□□□□□ -2.13
USP42Q9H9J4 AC097463.2-201ENST00000421074 142 ntBASIC1.75□□□□□ -2.13
USP42Q9H9J4 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC1.75□□□□□ -2.13
USP42Q9H9J4 IFNA20P-201ENST00000436840 528 ntBASIC1.75□□□□□ -2.13
USP42Q9H9J4 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC1.75□□□□□ -2.13
USP42Q9H9J4 RPL23AP6-201ENST00000446637 472 ntBASIC1.75□□□□□ -2.13
USP42Q9H9J4 AC104563.1-201ENST00000476147 376 ntBASIC1.75□□□□□ -2.13
USP42Q9H9J4 AC004223.1-201ENST00000479840 271 ntBASIC1.75□□□□□ -2.13
USP42Q9H9J4 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC1.75□□□□□ -2.13
USP42Q9H9J4 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC1.75□□□□□ -2.13
USP42Q9H9J4 AC093809.1-201ENST00000509155 340 ntBASIC1.75□□□□□ -2.13
USP42Q9H9J4 AC087894.1-201ENST00000538359 518 ntBASIC1.75□□□□□ -2.13
USP42Q9H9J4 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
USP42Q9H9J4 AC008015.1-201ENST00000555505 465 ntBASIC1.75□□□□□ -2.13
USP42Q9H9J4 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC1.75□□□□□ -2.13
USP42Q9H9J4 AC008741.1-201ENST00000569456 510 ntTSL 3 BASIC1.75□□□□□ -2.13
USP42Q9H9J4 ROCK1P1-201ENST00000573767 549 ntBASIC1.75□□□□□ -2.13
USP42Q9H9J4 AL031274.2-201ENST00000599419 203 ntBASIC1.75□□□□□ -2.13
USP42Q9H9J4 AL355598.1-201ENST00000604169 202 ntBASIC1.75□□□□□ -2.13
USP42Q9H9J4 DUSP12P1-201ENST00000612874 516 ntBASIC1.75□□□□□ -2.13
USP42Q9H9J4 AC009233.1-201ENST00000616477 371 ntBASIC1.75□□□□□ -2.13
USP42Q9H9J4 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC1.75□□□□□ -2.13
USP42Q9H9J4 AP000648.3-201ENST00000623539 4507 ntBASIC1.75□□□□□ -2.13
USP42Q9H9J4 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
USP42Q9H9J4 RNU6-289P-201ENST00000364093 107 ntBASIC1.74□□□□□ -2.13
USP42Q9H9J4 RNU1-93P-201ENST00000364704 169 ntBASIC1.74□□□□□ -2.13
USP42Q9H9J4 RPL21P24-201ENST00000413752 448 ntBASIC1.74□□□□□ -2.13
USP42Q9H9J4 ZNF90P2-204ENST00000419323 1075 ntBASIC1.74□□□□□ -2.13
USP42Q9H9J4 AC096920.1-201ENST00000423991 241 ntBASIC1.74□□□□□ -2.13
USP42Q9H9J4 MTATP6P30-201ENST00000443540 664 ntBASIC1.74□□□□□ -2.13
USP42Q9H9J4 AC092001.1-201ENST00000453012 261 ntBASIC1.74□□□□□ -2.13
USP42Q9H9J4 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC1.74□□□□□ -2.13
USP42Q9H9J4 AC010631.1-201ENST00000474150 156 ntBASIC1.74□□□□□ -2.13
USP42Q9H9J4 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC1.74□□□□□ -2.13
USP42Q9H9J4 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC1.74□□□□□ -2.13
USP42Q9H9J4 AC008628.1-201ENST00000508663 265 ntBASIC1.74□□□□□ -2.13
USP42Q9H9J4 MRPS17P9-201ENST00000511924 393 ntBASIC1.74□□□□□ -2.13
USP42Q9H9J4 RNA5SP61-201ENST00000516453 100 ntBASIC1.74□□□□□ -2.13
USP42Q9H9J4 AP003355.1-201ENST00000518956 587 ntBASIC1.74□□□□□ -2.13
USP42Q9H9J4 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC1.74□□□□□ -2.13
USP42Q9H9J4 AL512347.1-201ENST00000566420 503 ntBASIC1.74□□□□□ -2.13
USP42Q9H9J4 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.74□□□□□ -2.13
USP42Q9H9J4 AC090897.2-201ENST00000581715 130 ntBASIC1.74□□□□□ -2.13
USP42Q9H9J4 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC1.74□□□□□ -2.13
USP42Q9H9J4 AC091057.3-201ENST00000602684 733 ntBASIC1.74□□□□□ -2.13
USP42Q9H9J4 AL096840.1-201ENST00000603287 93 ntBASIC1.74□□□□□ -2.13
USP42Q9H9J4 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC1.74□□□□□ -2.13
USP42Q9H9J4 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC1.74□□□□□ -2.13
USP42Q9H9J4 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1.74□□□□□ -2.13
USP42Q9H9J4 PCF11-AS1-201ENST00000602322 1516 ntBASIC1.74□□□□□ -2.13
USP42Q9H9J4 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC1.74□□□□□ -2.13
USP42Q9H9J4 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.73□□□□□ -2.13
USP42Q9H9J4 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
USP42Q9H9J4 Y_RNA.112-201ENST00000363250 102 ntBASIC1.73□□□□□ -2.13
USP42Q9H9J4 snoZ40.1-201ENST00000364540 72 ntBASIC1.73□□□□□ -2.13
USP42Q9H9J4 RNA5SP240-201ENST00000365355 128 ntBASIC1.73□□□□□ -2.13
USP42Q9H9J4 RNU6-1-201ENST00000383898 107 ntBASIC1.73□□□□□ -2.13
USP42Q9H9J4 RNU6-42P-201ENST00000384165 107 ntBASIC1.73□□□□□ -2.13
USP42Q9H9J4 RNU6-36P-201ENST00000384172 107 ntBASIC1.73□□□□□ -2.13
USP42Q9H9J4 RNU6-4P-201ENST00000384205 107 ntBASIC1.73□□□□□ -2.13
USP42Q9H9J4 RNU6-5P-201ENST00000384238 107 ntBASIC1.73□□□□□ -2.13
USP42Q9H9J4 RNU6-3P-201ENST00000384314 107 ntBASIC1.73□□□□□ -2.13
USP42Q9H9J4 RNU6-2-201ENST00000384627 107 ntBASIC1.73□□□□□ -2.13
USP42Q9H9J4 RNU6-9-201ENST00000384776 107 ntBASIC1.73□□□□□ -2.13
USP42Q9H9J4 RNU6-33P-201ENST00000384793 107 ntBASIC1.73□□□□□ -2.13
USP42Q9H9J4 AL356432.1-201ENST00000405809 419 ntBASIC1.73□□□□□ -2.13
USP42Q9H9J4 MIR1302-8-201ENST00000408342 128 ntBASIC1.73□□□□□ -2.13
USP42Q9H9J4 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC1.73□□□□□ -2.13
USP42Q9H9J4 AC007098.1-201ENST00000420122 367 ntBASIC1.73□□□□□ -2.13
USP42Q9H9J4 AC244035.1-201ENST00000430042 390 ntBASIC1.73□□□□□ -2.13
USP42Q9H9J4 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC1.73□□□□□ -2.13
USP42Q9H9J4 TRBV25OR9-2-201ENST00000438417 374 ntBASIC1.73□□□□□ -2.13
USP42Q9H9J4 AC017099.1-201ENST00000448261 1028 ntBASIC1.73□□□□□ -2.13
USP42Q9H9J4 OR6C5P-201ENST00000452388 923 ntBASIC1.73□□□□□ -2.13
USP42Q9H9J4 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC1.73□□□□□ -2.13
USP42Q9H9J4 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC1.73□□□□□ -2.13
USP42Q9H9J4 AC112771.1-201ENST00000463581 102 ntBASIC1.73□□□□□ -2.13
USP42Q9H9J4 RPL7P18-201ENST00000478965 734 ntBASIC1.73□□□□□ -2.13
USP42Q9H9J4 MTCYBP18-201ENST00000501056 747 ntBASIC1.73□□□□□ -2.13
USP42Q9H9J4 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.73□□□□□ -2.13
USP42Q9H9J4 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.73□□□□□ -2.13
USP42Q9H9J4 Y_RNA.670-201ENST00000516255 105 ntBASIC1.73□□□□□ -2.13
USP42Q9H9J4 Y_RNA.675-201ENST00000516389 149 ntBASIC1.73□□□□□ -2.13
USP42Q9H9J4 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC1.73□□□□□ -2.13
USP42Q9H9J4 MRPS36P5-201ENST00000551909 298 ntBASIC1.73□□□□□ -2.13
USP42Q9H9J4 AL132657.2-201ENST00000564417 358 ntBASIC1.73□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms