Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.22□□□□□ -1.89
USP44Q9H0E7 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
USP44Q9H0E7 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
USP44Q9H0E7 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.22□□□□□ -1.89
USP44Q9H0E7 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC3.21□□□□□ -1.89
USP44Q9H0E7 AL136360.1-201ENST00000503377 1900 ntBASIC3.21□□□□□ -1.9
USP44Q9H0E7 Y_RNA.1-201ENST00000352915 104 ntBASIC3.21□□□□□ -1.9
USP44Q9H0E7 DYNLT3P1-201ENST00000378574 347 ntBASIC3.21□□□□□ -1.9
USP44Q9H0E7 MIR27B-201ENST00000385129 97 ntBASIC3.21□□□□□ -1.9
USP44Q9H0E7 RNA5SP210-201ENST00000391034 120 ntBASIC3.21□□□□□ -1.9
USP44Q9H0E7 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.21□□□□□ -1.9
USP44Q9H0E7 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC3.21□□□□□ -1.9
USP44Q9H0E7 PSPHP1-201ENST00000450062 261 ntBASIC3.21□□□□□ -1.9
USP44Q9H0E7 AC093392.2-201ENST00000450682 337 ntBASIC3.21□□□□□ -1.9
USP44Q9H0E7 AC091179.1-201ENST00000461606 579 ntBASIC3.21□□□□□ -1.9
USP44Q9H0E7 SRRM1P2-201ENST00000464531 1192 ntBASIC3.21□□□□□ -1.9
USP44Q9H0E7 AC098591.2-201ENST00000510152 315 ntBASIC3.21□□□□□ -1.9
USP44Q9H0E7 RNA5SP320-201ENST00000516263 124 ntBASIC3.21□□□□□ -1.9
USP44Q9H0E7 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC3.21□□□□□ -1.9
USP44Q9H0E7 AC027176.1-201ENST00000560204 514 ntBASIC3.21□□□□□ -1.9
USP44Q9H0E7 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC3.21□□□□□ -1.9
USP44Q9H0E7 AC068135.2-201ENST00000569293 1028 ntBASIC3.21□□□□□ -1.9
USP44Q9H0E7 AC008521.1-201ENST00000587471 187 ntBASIC3.21□□□□□ -1.9
USP44Q9H0E7 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC3.21□□□□□ -1.9
USP44Q9H0E7 AC012507.3-201ENST00000603556 477 ntBASIC3.21□□□□□ -1.9
USP44Q9H0E7 AL138889.2-201ENST00000603883 242 ntBASIC3.21□□□□□ -1.9
USP44Q9H0E7 AC069234.5-201ENST00000611056 416 ntBASIC3.21□□□□□ -1.9
USP44Q9H0E7 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
USP44Q9H0E7 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.21□□□□□ -1.9
USP44Q9H0E7 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
USP44Q9H0E7 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
USP44Q9H0E7 Y_RNA.33-201ENST00000362591 102 ntBASIC3.2□□□□□ -1.9
USP44Q9H0E7 RNU1-100P-201ENST00000365255 165 ntBASIC3.2□□□□□ -1.9
USP44Q9H0E7 SNORD115-7-201ENST00000365306 82 ntBASIC3.2□□□□□ -1.9
USP44Q9H0E7 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC3.2□□□□□ -1.9
USP44Q9H0E7 SNORA67.4-201ENST00000384688 142 ntBASIC3.2□□□□□ -1.9
USP44Q9H0E7 MIR518C-201ENST00000384822 101 ntBASIC3.2□□□□□ -1.9
USP44Q9H0E7 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.2□□□□□ -1.9
USP44Q9H0E7 PPP3R1-202ENST00000409377 684 ntTSL 3 BASIC3.2□□□□□ -1.9
USP44Q9H0E7 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC3.2□□□□□ -1.9
USP44Q9H0E7 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.2□□□□□ -1.9
USP44Q9H0E7 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC3.2□□□□□ -1.9
USP44Q9H0E7 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
USP44Q9H0E7 C8orf59P1-201ENST00000429930 303 ntBASIC3.2□□□□□ -1.9
USP44Q9H0E7 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
USP44Q9H0E7 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC3.2□□□□□ -1.9
USP44Q9H0E7 AC133134.1-201ENST00000466800 359 ntBASIC3.2□□□□□ -1.9
USP44Q9H0E7 SRIP1-201ENST00000489235 288 ntBASIC3.2□□□□□ -1.9
USP44Q9H0E7 EIF4EP3-201ENST00000498782 656 ntBASIC3.2□□□□□ -1.9
USP44Q9H0E7 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.2□□□□□ -1.9
USP44Q9H0E7 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC3.2□□□□□ -1.9
USP44Q9H0E7 RNA5SP503-201ENST00000517047 117 ntBASIC3.2□□□□□ -1.9
USP44Q9H0E7 OR5AL2P-201ENST00000532185 920 ntBASIC3.2□□□□□ -1.9
USP44Q9H0E7 AL157871.3-201ENST00000557231 293 ntBASIC3.2□□□□□ -1.9
USP44Q9H0E7 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC3.2□□□□□ -1.9
USP44Q9H0E7 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC3.2□□□□□ -1.9
USP44Q9H0E7 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC3.2□□□□□ -1.9
USP44Q9H0E7 AC025449.1-201ENST00000603896 529 ntBASIC3.2□□□□□ -1.9
USP44Q9H0E7 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
USP44Q9H0E7 AC110491.1-201ENST00000562191 2010 ntBASIC3.2□□□□□ -1.9
USP44Q9H0E7 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
USP44Q9H0E7 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
USP44Q9H0E7 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
USP44Q9H0E7 NACAP2-201ENST00000318548 624 ntBASIC3.19□□□□□ -1.9
USP44Q9H0E7 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
USP44Q9H0E7 SNORD21-201ENST00000383953 95 ntBASIC3.19□□□□□ -1.9
USP44Q9H0E7 RNA5SP354-201ENST00000391247 136 ntBASIC3.19□□□□□ -1.9
USP44Q9H0E7 MTCO3P40-201ENST00000392516 676 ntBASIC3.19□□□□□ -1.9
USP44Q9H0E7 CALM2P3-201ENST00000400429 449 ntBASIC3.19□□□□□ -1.9
USP44Q9H0E7 RNU2-29P-201ENST00000410423 189 ntBASIC3.19□□□□□ -1.9
USP44Q9H0E7 UBE2V1P10-201ENST00000414685 269 ntBASIC3.19□□□□□ -1.9
USP44Q9H0E7 AL353193.1-201ENST00000421444 268 ntBASIC3.19□□□□□ -1.9
USP44Q9H0E7 AC098614.2-201ENST00000426040 255 ntBASIC3.19□□□□□ -1.9
USP44Q9H0E7 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC3.19□□□□□ -1.9
USP44Q9H0E7 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC3.19□□□□□ -1.9
USP44Q9H0E7 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC3.19□□□□□ -1.9
USP44Q9H0E7 AC126182.1-201ENST00000478134 357 ntBASIC3.19□□□□□ -1.9
USP44Q9H0E7 AC079140.5-201ENST00000507882 310 ntBASIC3.19□□□□□ -1.9
USP44Q9H0E7 RNU6-123P-201ENST00000516163 102 ntBASIC3.19□□□□□ -1.9
USP44Q9H0E7 AC022634.1-201ENST00000520765 532 ntBASIC3.19□□□□□ -1.9
USP44Q9H0E7 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC3.19□□□□□ -1.9
USP44Q9H0E7 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC3.19□□□□□ -1.9
USP44Q9H0E7 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC3.19□□□□□ -1.9
USP44Q9H0E7 TPRKBP2-201ENST00000565969 475 ntBASIC3.19□□□□□ -1.9
USP44Q9H0E7 AC234778.2-201ENST00000566241 354 ntBASIC3.19□□□□□ -1.9
USP44Q9H0E7 MIR5692A1-201ENST00000580523 69 ntBASIC3.19□□□□□ -1.9
USP44Q9H0E7 AC005498.1-201ENST00000592125 465 ntBASIC3.19□□□□□ -1.9
USP44Q9H0E7 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC3.19□□□□□ -1.9
USP44Q9H0E7 AL158032.1-201ENST00000605401 106 ntBASIC3.19□□□□□ -1.9
USP44Q9H0E7 AC092954.2-201ENST00000609103 430 ntBASIC3.19□□□□□ -1.9
USP44Q9H0E7 AC068792.1-201ENST00000621354 417 ntBASIC3.19□□□□□ -1.9
USP44Q9H0E7 MTND4P35-201ENST00000604257 1375 ntBASIC3.19□□□□□ -1.9
USP44Q9H0E7 ELF2P3-201ENST00000445099 1506 ntBASIC3.19□□□□□ -1.9
USP44Q9H0E7 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
USP44Q9H0E7 ZNF680P1-201ENST00000436625 1469 ntBASIC3.18□□□□□ -1.9
USP44Q9H0E7 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
USP44Q9H0E7 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
USP44Q9H0E7 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
USP44Q9H0E7 Y_RNA.6-201ENST00000362350 114 ntBASIC3.18□□□□□ -1.9
USP44Q9H0E7 SNORA4.3-201ENST00000365564 137 ntBASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 118 ms