Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 SNORA51.11-201ENST00000384442 131 ntBASIC2.28□□□□□ -2.04
VPS35Q96QK1 MIR518D-201ENST00000385014 87 ntBASIC2.28□□□□□ -2.04
VPS35Q96QK1 AL591416.1-201ENST00000404015 867 ntBASIC2.28□□□□□ -2.04
VPS35Q96QK1 AC107081.1-201ENST00000414975 361 ntBASIC2.28□□□□□ -2.04
VPS35Q96QK1 CYCSP48-201ENST00000417124 323 ntBASIC2.28□□□□□ -2.04
VPS35Q96QK1 Z99497.1-201ENST00000421282 135 ntBASIC2.28□□□□□ -2.04
VPS35Q96QK1 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC2.28□□□□□ -2.04
VPS35Q96QK1 WARS2P1-201ENST00000429678 537 ntBASIC2.28□□□□□ -2.04
VPS35Q96QK1 MYL8P-204ENST00000431574 518 ntBASIC2.28□□□□□ -2.04
VPS35Q96QK1 RPS15AP28-201ENST00000435088 386 ntBASIC2.28□□□□□ -2.04
VPS35Q96QK1 PGBD4P3-201ENST00000440731 581 ntBASIC2.28□□□□□ -2.04
VPS35Q96QK1 UBE2D3P4-201ENST00000441973 436 ntBASIC2.28□□□□□ -2.04
VPS35Q96QK1 FABP5P13-201ENST00000452144 328 ntBASIC2.28□□□□□ -2.04
VPS35Q96QK1 AL441985.1-201ENST00000457727 251 ntBASIC2.28□□□□□ -2.04
VPS35Q96QK1 BZW1P2-201ENST00000473537 826 ntBASIC2.28□□□□□ -2.04
VPS35Q96QK1 FAM92A1P2-202ENST00000504766 877 ntBASIC2.28□□□□□ -2.04
VPS35Q96QK1 AC022878.1-201ENST00000530684 149 ntBASIC2.28□□□□□ -2.04
VPS35Q96QK1 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC2.28□□□□□ -2.04
VPS35Q96QK1 MIR4435-1-201ENST00000582552 80 ntBASIC2.28□□□□□ -2.04
VPS35Q96QK1 WISP1-OT1-201ENST00000602893 642 ntBASIC2.28□□□□□ -2.04
VPS35Q96QK1 AC092354.1-201ENST00000606057 376 ntBASIC2.28□□□□□ -2.04
VPS35Q96QK1 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
VPS35Q96QK1 AL590808.1-201ENST00000618696 141 ntBASIC2.28□□□□□ -2.04
VPS35Q96QK1 MIR6766-201ENST00000622641 72 ntBASIC2.28□□□□□ -2.04
VPS35Q96QK1 AC025048.6-202ENST00000627667 438 ntBASIC2.28□□□□□ -2.04
VPS35Q96QK1 AC006020.1-201ENST00000420179 1854 ntBASIC2.27□□□□□ -2.05
VPS35Q96QK1 RNA5SP125-201ENST00000364843 120 ntBASIC2.27□□□□□ -2.05
VPS35Q96QK1 RNU6-166P-201ENST00000384371 107 ntBASIC2.27□□□□□ -2.05
VPS35Q96QK1 U6atac.2-201ENST00000408644 118 ntBASIC2.27□□□□□ -2.05
VPS35Q96QK1 ELOCP4-201ENST00000420090 333 ntBASIC2.27□□□□□ -2.05
VPS35Q96QK1 MTND4P20-201ENST00000424125 869 ntBASIC2.27□□□□□ -2.05
VPS35Q96QK1 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC2.27□□□□□ -2.05
VPS35Q96QK1 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC2.27□□□□□ -2.05
VPS35Q96QK1 MTND5P25-201ENST00000430499 799 ntBASIC2.27□□□□□ -2.05
VPS35Q96QK1 AL356277.3-201ENST00000432484 618 ntTSL 3 BASIC2.27□□□□□ -2.05
VPS35Q96QK1 AC018634.1-201ENST00000437554 401 ntBASIC2.27□□□□□ -2.05
VPS35Q96QK1 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC2.27□□□□□ -2.05
VPS35Q96QK1 AC003071.1-201ENST00000451219 789 ntBASIC2.27□□□□□ -2.05
VPS35Q96QK1 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC2.27□□□□□ -2.05
VPS35Q96QK1 KATNBL1P6-201ENST00000453433 915 ntBASIC2.27□□□□□ -2.05
VPS35Q96QK1 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC2.27□□□□□ -2.05
VPS35Q96QK1 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC2.27□□□□□ -2.05
VPS35Q96QK1 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC2.27□□□□□ -2.05
VPS35Q96QK1 MTND1P22-201ENST00000510572 951 ntBASIC2.27□□□□□ -2.05
VPS35Q96QK1 MRPS33P3-201ENST00000513456 322 ntBASIC2.27□□□□□ -2.05
VPS35Q96QK1 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC2.27□□□□□ -2.05
VPS35Q96QK1 RNA5SP281-201ENST00000516504 135 ntBASIC2.27□□□□□ -2.05
VPS35Q96QK1 RNU6-759P-201ENST00000516740 103 ntBASIC2.27□□□□□ -2.05
VPS35Q96QK1 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC2.27□□□□□ -2.05
VPS35Q96QK1 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.27□□□□□ -2.05
VPS35Q96QK1 AC009063.1-201ENST00000563342 702 ntBASIC2.27□□□□□ -2.05
VPS35Q96QK1 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.27□□□□□ -2.05
VPS35Q96QK1 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.27□□□□□ -2.05
VPS35Q96QK1 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
VPS35Q96QK1 AF246928.1-201ENST00000623768 87 ntBASIC2.27□□□□□ -2.05
VPS35Q96QK1 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.27□□□□□ -2.05
VPS35Q96QK1 ATP8A2P3-201ENST00000426792 1536 ntBASIC2.27□□□□□ -2.05
VPS35Q96QK1 RNU6-553P-201ENST00000364047 96 ntBASIC2.26□□□□□ -2.05
VPS35Q96QK1 RNU1-51P-201ENST00000365345 176 ntBASIC2.26□□□□□ -2.05
VPS35Q96QK1 SNORA75B-201ENST00000384053 137 ntBASIC2.26□□□□□ -2.05
VPS35Q96QK1 RNU1-52P-201ENST00000384190 164 ntBASIC2.26□□□□□ -2.05
VPS35Q96QK1 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.26□□□□□ -2.05
VPS35Q96QK1 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC2.26□□□□□ -2.05
VPS35Q96QK1 AL139413.1-201ENST00000421309 217 ntBASIC2.26□□□□□ -2.05
VPS35Q96QK1 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC2.26□□□□□ -2.05
VPS35Q96QK1 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC2.26□□□□□ -2.05
VPS35Q96QK1 RPS24P1-201ENST00000438550 371 ntBASIC2.26□□□□□ -2.05
VPS35Q96QK1 MTND1P30-201ENST00000441241 901 ntBASIC2.26□□□□□ -2.05
VPS35Q96QK1 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
VPS35Q96QK1 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC2.26□□□□□ -2.05
VPS35Q96QK1 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC2.26□□□□□ -2.05
VPS35Q96QK1 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC2.26□□□□□ -2.05
VPS35Q96QK1 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.26□□□□□ -2.05
VPS35Q96QK1 AC011005.2-201ENST00000487324 359 ntBASIC2.26□□□□□ -2.05
VPS35Q96QK1 RPL22P13-201ENST00000493291 347 ntBASIC2.26□□□□□ -2.05
VPS35Q96QK1 MTCYBP35-201ENST00000503630 1137 ntBASIC2.26□□□□□ -2.05
VPS35Q96QK1 MTND4P2-201ENST00000507767 1203 ntBASIC2.26□□□□□ -2.05
VPS35Q96QK1 RPL23AP94-201ENST00000512518 302 ntBASIC2.26□□□□□ -2.05
VPS35Q96QK1 SMURF2P1-201ENST00000514992 481 ntBASIC2.26□□□□□ -2.05
VPS35Q96QK1 Y_RNA.672-201ENST00000516289 104 ntBASIC2.26□□□□□ -2.05
VPS35Q96QK1 MIR892C-201ENST00000516410 77 ntBASIC2.26□□□□□ -2.05
VPS35Q96QK1 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC2.26□□□□□ -2.05
VPS35Q96QK1 AC106038.2-201ENST00000520706 568 ntBASIC2.26□□□□□ -2.05
VPS35Q96QK1 RPL21P5-201ENST00000554662 472 ntBASIC2.26□□□□□ -2.05
VPS35Q96QK1 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC2.26□□□□□ -2.05
VPS35Q96QK1 AL451064.1-201ENST00000607718 471 ntBASIC2.26□□□□□ -2.05
VPS35Q96QK1 AL360219.1-201ENST00000610230 366 ntBASIC2.26□□□□□ -2.05
VPS35Q96QK1 AC087683.2-201ENST00000611384 326 ntBASIC2.26□□□□□ -2.05
VPS35Q96QK1 AL359547.2-201ENST00000615810 418 ntBASIC2.26□□□□□ -2.05
VPS35Q96QK1 AC009159.2-201ENST00000617603 606 ntBASIC2.26□□□□□ -2.05
VPS35Q96QK1 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.26□□□□□ -2.05
VPS35Q96QK1 USP12-203ENST00000620323 349 ntTSL 3 BASIC2.26□□□□□ -2.05
VPS35Q96QK1 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.26□□□□□ -2.05
VPS35Q96QK1 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
VPS35Q96QK1 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
VPS35Q96QK1 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.25□□□□□ -2.05
VPS35Q96QK1 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
VPS35Q96QK1 AL596028.1-201ENST00000326971 197 ntBASIC2.25□□□□□ -2.05
VPS35Q96QK1 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
VPS35Q96QK1 AL031577.2-201ENST00000404133 280 ntBASIC2.25□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 164.4 ms