Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC1.54□□□□□ -2.16
LMX1AQ8TE12 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC1.54□□□□□ -2.16
LMX1AQ8TE12 RPL30P4-201ENST00000429309 333 ntBASIC1.54□□□□□ -2.16
LMX1AQ8TE12 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC1.54□□□□□ -2.16
LMX1AQ8TE12 HMGN2P10-201ENST00000448085 265 ntBASIC1.54□□□□□ -2.16
LMX1AQ8TE12 EXOSC3P1-201ENST00000448649 500 ntBASIC1.54□□□□□ -2.16
LMX1AQ8TE12 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC1.54□□□□□ -2.16
LMX1AQ8TE12 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC1.54□□□□□ -2.16
LMX1AQ8TE12 RNU7-59P-201ENST00000459101 61 ntBASIC1.54□□□□□ -2.16
LMX1AQ8TE12 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.54□□□□□ -2.16
LMX1AQ8TE12 RPL7P18-201ENST00000478965 734 ntBASIC1.54□□□□□ -2.16
LMX1AQ8TE12 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
LMX1AQ8TE12 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC1.54□□□□□ -2.16
LMX1AQ8TE12 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC1.54□□□□□ -2.16
LMX1AQ8TE12 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.54□□□□□ -2.16
LMX1AQ8TE12 AC091057.3-201ENST00000602684 733 ntBASIC1.54□□□□□ -2.16
LMX1AQ8TE12 BCRP9-201ENST00000605312 388 ntBASIC1.54□□□□□ -2.16
LMX1AQ8TE12 AC004908.2-201ENST00000609090 574 ntBASIC1.54□□□□□ -2.16
LMX1AQ8TE12 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
LMX1AQ8TE12 DUSP12P1-201ENST00000612874 516 ntBASIC1.54□□□□□ -2.16
LMX1AQ8TE12 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC1.54□□□□□ -2.16
LMX1AQ8TE12 DLEU1_2.1-201ENST00000617920 342 ntBASIC1.54□□□□□ -2.16
LMX1AQ8TE12 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.54□□□□□ -2.16
LMX1AQ8TE12 SNORD48-201ENST00000364953 64 ntBASIC1.53□□□□□ -2.16
LMX1AQ8TE12 MIR218-1-201ENST00000384999 110 ntBASIC1.53□□□□□ -2.16
LMX1AQ8TE12 MIR320C1-201ENST00000408566 88 ntBASIC1.53□□□□□ -2.16
LMX1AQ8TE12 AL359704.1-201ENST00000411586 781 ntBASIC1.53□□□□□ -2.16
LMX1AQ8TE12 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC1.53□□□□□ -2.16
LMX1AQ8TE12 DNAJA1P2-201ENST00000421360 1197 ntBASIC1.53□□□□□ -2.16
LMX1AQ8TE12 BX510359.4-201ENST00000423750 193 ntBASIC1.53□□□□□ -2.16
LMX1AQ8TE12 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.53□□□□□ -2.16
LMX1AQ8TE12 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC1.53□□□□□ -2.16
LMX1AQ8TE12 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC1.53□□□□□ -2.16
LMX1AQ8TE12 ELOCP30-201ENST00000447108 299 ntBASIC1.53□□□□□ -2.16
LMX1AQ8TE12 AC009474.2-201ENST00000451383 136 ntBASIC1.53□□□□□ -2.16
LMX1AQ8TE12 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
LMX1AQ8TE12 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.53□□□□□ -2.16
LMX1AQ8TE12 AC055855.1-201ENST00000489563 579 ntBASIC1.53□□□□□ -2.16
LMX1AQ8TE12 AC005840.1-201ENST00000498412 377 ntBASIC1.53□□□□□ -2.16
LMX1AQ8TE12 RPF2P2-201ENST00000504693 896 ntBASIC1.53□□□□□ -2.16
LMX1AQ8TE12 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC1.53□□□□□ -2.16
LMX1AQ8TE12 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC1.53□□□□□ -2.16
LMX1AQ8TE12 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC1.53□□□□□ -2.16
LMX1AQ8TE12 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC1.53□□□□□ -2.16
LMX1AQ8TE12 AC093012.1-202ENST00000549403 582 ntBASIC1.53□□□□□ -2.16
LMX1AQ8TE12 MRPS36P5-201ENST00000551909 298 ntBASIC1.53□□□□□ -2.16
LMX1AQ8TE12 AC021739.1-201ENST00000559631 174 ntBASIC1.53□□□□□ -2.16
LMX1AQ8TE12 AC005261.5-201ENST00000596280 355 ntBASIC1.53□□□□□ -2.16
LMX1AQ8TE12 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC1.53□□□□□ -2.16
LMX1AQ8TE12 AL158050.2-201ENST00000605336 568 ntBASIC1.53□□□□□ -2.16
LMX1AQ8TE12 RNU6-88P-201ENST00000606801 100 ntBASIC1.53□□□□□ -2.16
LMX1AQ8TE12 AC080013.3-201ENST00000606839 578 ntBASIC1.53□□□□□ -2.16
LMX1AQ8TE12 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.53□□□□□ -2.16
LMX1AQ8TE12 OR8H2-202ENST00000618136 1038 ntAPPRIS ALT1 BASIC1.53□□□□□ -2.16
LMX1AQ8TE12 AC009269.6-201ENST00000621778 588 ntBASIC1.53□□□□□ -2.16
LMX1AQ8TE12 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.53□□□□□ -2.17
LMX1AQ8TE12 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.52□□□□□ -2.17
LMX1AQ8TE12 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
LMX1AQ8TE12 AL354685.2-201ENST00000448218 1447 ntBASIC1.52□□□□□ -2.17
LMX1AQ8TE12 NF1-214ENST00000490416 1329 ntTSL 3 BASIC1.52□□□□□ -2.17
LMX1AQ8TE12 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC1.52□□□□□ -2.17
LMX1AQ8TE12 RNU6-486P-201ENST00000363116 107 ntBASIC1.52□□□□□ -2.17
LMX1AQ8TE12 RNU6-433P-201ENST00000363216 104 ntBASIC1.52□□□□□ -2.17
LMX1AQ8TE12 RNU6-188P-201ENST00000364207 107 ntBASIC1.52□□□□□ -2.17
LMX1AQ8TE12 MIR517C-201ENST00000385103 95 ntBASIC1.52□□□□□ -2.17
LMX1AQ8TE12 RNU6-1242P-201ENST00000391052 103 ntBASIC1.52□□□□□ -2.17
LMX1AQ8TE12 MIR1323-201ENST00000408090 73 ntBASIC1.52□□□□□ -2.17
LMX1AQ8TE12 RNU6-174P-201ENST00000410406 106 ntBASIC1.52□□□□□ -2.17
LMX1AQ8TE12 ELOCP9-201ENST00000418624 239 ntBASIC1.52□□□□□ -2.17
LMX1AQ8TE12 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC1.52□□□□□ -2.17
LMX1AQ8TE12 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC1.52□□□□□ -2.17
LMX1AQ8TE12 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC1.52□□□□□ -2.17
LMX1AQ8TE12 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC1.52□□□□□ -2.17
LMX1AQ8TE12 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC1.52□□□□□ -2.17
LMX1AQ8TE12 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
LMX1AQ8TE12 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC1.52□□□□□ -2.17
LMX1AQ8TE12 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC1.52□□□□□ -2.17
LMX1AQ8TE12 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC1.52□□□□□ -2.17
LMX1AQ8TE12 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC1.52□□□□□ -2.17
LMX1AQ8TE12 AC140059.1-201ENST00000489238 361 ntBASIC1.52□□□□□ -2.17
LMX1AQ8TE12 AF213884.2-201ENST00000510417 903 ntBASIC1.52□□□□□ -2.17
LMX1AQ8TE12 MTRNR2L5-201ENST00000512524 739 ntAPPRIS P1 BASIC1.52□□□□□ -2.17
LMX1AQ8TE12 RNU2-44P-201ENST00000516795 194 ntBASIC1.52□□□□□ -2.17
LMX1AQ8TE12 RNU1-92P-201ENST00000517017 135 ntBASIC1.52□□□□□ -2.17
LMX1AQ8TE12 RNA5SP165-201ENST00000517142 115 ntBASIC1.52□□□□□ -2.17
LMX1AQ8TE12 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.52□□□□□ -2.17
LMX1AQ8TE12 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.52□□□□□ -2.17
LMX1AQ8TE12 DUXAP1-201ENST00000556632 463 ntBASIC1.52□□□□□ -2.17
LMX1AQ8TE12 MIR4529-201ENST00000578110 78 ntBASIC1.52□□□□□ -2.17
LMX1AQ8TE12 MIR4287-201ENST00000579398 78 ntBASIC1.52□□□□□ -2.17
LMX1AQ8TE12 AC024619.4-201ENST00000580924 316 ntBASIC1.52□□□□□ -2.17
LMX1AQ8TE12 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC1.52□□□□□ -2.17
LMX1AQ8TE12 AC091152.3-201ENST00000604227 325 ntBASIC1.52□□□□□ -2.17
LMX1AQ8TE12 AC068276.1-201ENST00000605793 379 ntBASIC1.52□□□□□ -2.17
LMX1AQ8TE12 AC007038.2-201ENST00000608095 740 ntBASIC1.52□□□□□ -2.17
LMX1AQ8TE12 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC1.52□□□□□ -2.17
LMX1AQ8TE12 MIR3199-2-201ENST00000636243 86 ntBASIC1.52□□□□□ -2.17
LMX1AQ8TE12 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
LMX1AQ8TE12 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.52□□□□□ -2.17
LMX1AQ8TE12 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 117.6 ms