Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC2.16□□□□□ -2.06
SKA3Q8IX90 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.16□□□□□ -2.06
SKA3Q8IX90 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC2.16□□□□□ -2.06
SKA3Q8IX90 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC2.16□□□□□ -2.06
SKA3Q8IX90 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC2.16□□□□□ -2.06
SKA3Q8IX90 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC2.16□□□□□ -2.06
SKA3Q8IX90 AL353706.1-201ENST00000436728 494 ntBASIC2.16□□□□□ -2.06
SKA3Q8IX90 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.16□□□□□ -2.06
SKA3Q8IX90 HMGN2P10-201ENST00000448085 265 ntBASIC2.16□□□□□ -2.06
SKA3Q8IX90 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC2.16□□□□□ -2.06
SKA3Q8IX90 MTCYBP1-201ENST00000454315 1119 ntBASIC2.16□□□□□ -2.06
SKA3Q8IX90 AC107626.1-201ENST00000471084 183 ntBASIC2.16□□□□□ -2.06
SKA3Q8IX90 AC026801.1-201ENST00000497178 464 ntBASIC2.16□□□□□ -2.06
SKA3Q8IX90 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC2.16□□□□□ -2.06
SKA3Q8IX90 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC2.16□□□□□ -2.06
SKA3Q8IX90 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC2.16□□□□□ -2.06
SKA3Q8IX90 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC2.16□□□□□ -2.06
SKA3Q8IX90 RNU6-410P-201ENST00000517006 107 ntBASIC2.16□□□□□ -2.06
SKA3Q8IX90 RNU6-1183P-201ENST00000517054 60 ntBASIC2.16□□□□□ -2.06
SKA3Q8IX90 SNORA31.19-201ENST00000517079 126 ntBASIC2.16□□□□□ -2.06
SKA3Q8IX90 AC025755.1-201ENST00000521306 278 ntBASIC2.16□□□□□ -2.06
SKA3Q8IX90 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC2.16□□□□□ -2.06
SKA3Q8IX90 AP001646.1-201ENST00000527936 915 ntBASIC2.16□□□□□ -2.06
SKA3Q8IX90 AC006199.1-201ENST00000548728 219 ntBASIC2.16□□□□□ -2.06
SKA3Q8IX90 AC087883.1-201ENST00000551882 391 ntBASIC2.16□□□□□ -2.06
SKA3Q8IX90 AC027176.1-201ENST00000560204 514 ntBASIC2.16□□□□□ -2.06
SKA3Q8IX90 AC234778.2-201ENST00000566241 354 ntBASIC2.16□□□□□ -2.06
SKA3Q8IX90 MIR3162-201ENST00000581818 82 ntBASIC2.16□□□□□ -2.06
SKA3Q8IX90 AC006023.1-201ENST00000603944 259 ntBASIC2.16□□□□□ -2.06
SKA3Q8IX90 MIR98-201ENST00000606724 119 ntBASIC2.16□□□□□ -2.06
SKA3Q8IX90 AL359547.2-201ENST00000615810 418 ntBASIC2.16□□□□□ -2.06
SKA3Q8IX90 AL136360.1-201ENST00000503377 1900 ntBASIC2.16□□□□□ -2.06
SKA3Q8IX90 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
SKA3Q8IX90 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
SKA3Q8IX90 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
SKA3Q8IX90 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
SKA3Q8IX90 Y_RNA.33-201ENST00000362591 102 ntBASIC2.15□□□□□ -2.07
SKA3Q8IX90 RNU6-461P-201ENST00000364195 107 ntBASIC2.15□□□□□ -2.07
SKA3Q8IX90 RN7SKP226-201ENST00000364912 300 ntBASIC2.15□□□□□ -2.07
SKA3Q8IX90 MIR634-201ENST00000385208 97 ntBASIC2.15□□□□□ -2.07
SKA3Q8IX90 AL162578.1-201ENST00000406202 378 ntBASIC2.15□□□□□ -2.07
SKA3Q8IX90 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
SKA3Q8IX90 OR51A5P-201ENST00000415429 942 ntBASIC2.15□□□□□ -2.07
SKA3Q8IX90 AC007560.1-201ENST00000426912 237 ntBASIC2.15□□□□□ -2.07
SKA3Q8IX90 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC2.15□□□□□ -2.07
SKA3Q8IX90 AL031667.1-201ENST00000440222 725 ntBASIC2.15□□□□□ -2.07
SKA3Q8IX90 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC2.15□□□□□ -2.07
SKA3Q8IX90 BRK1P2-201ENST00000442875 223 ntBASIC2.15□□□□□ -2.07
SKA3Q8IX90 USP9YP29-201ENST00000445112 563 ntBASIC2.15□□□□□ -2.07
SKA3Q8IX90 AC104389.3-201ENST00000445629 235 ntBASIC2.15□□□□□ -2.07
SKA3Q8IX90 DPPA3P1-201ENST00000448050 469 ntBASIC2.15□□□□□ -2.07
SKA3Q8IX90 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC2.15□□□□□ -2.07
SKA3Q8IX90 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.15□□□□□ -2.07
SKA3Q8IX90 AC233279.1-201ENST00000455300 423 ntBASIC2.15□□□□□ -2.07
SKA3Q8IX90 RNU6-956P-201ENST00000458868 103 ntBASIC2.15□□□□□ -2.07
SKA3Q8IX90 LAMTOR3P2-201ENST00000504479 232 ntBASIC2.15□□□□□ -2.07
SKA3Q8IX90 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.15□□□□□ -2.07
SKA3Q8IX90 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.15□□□□□ -2.07
SKA3Q8IX90 Y_RNA.688-201ENST00000516565 95 ntBASIC2.15□□□□□ -2.07
SKA3Q8IX90 AC090572.1-201ENST00000519251 160 ntBASIC2.15□□□□□ -2.07
SKA3Q8IX90 RPL7P20-201ENST00000520308 745 ntBASIC2.15□□□□□ -2.07
SKA3Q8IX90 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC2.15□□□□□ -2.07
SKA3Q8IX90 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC2.15□□□□□ -2.07
SKA3Q8IX90 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
SKA3Q8IX90 ADI1P3-201ENST00000549509 470 ntBASIC2.15□□□□□ -2.07
SKA3Q8IX90 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.15□□□□□ -2.07
SKA3Q8IX90 AC021739.1-201ENST00000559631 174 ntBASIC2.15□□□□□ -2.07
SKA3Q8IX90 MIR3913-1-201ENST00000577744 102 ntBASIC2.15□□□□□ -2.07
SKA3Q8IX90 MIR4782-201ENST00000577987 79 ntBASIC2.15□□□□□ -2.07
SKA3Q8IX90 MIR3117-201ENST00000584034 78 ntBASIC2.15□□□□□ -2.07
SKA3Q8IX90 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC2.15□□□□□ -2.07
SKA3Q8IX90 NRBF2P5-201ENST00000603087 788 ntBASIC2.15□□□□□ -2.07
SKA3Q8IX90 AL139286.2-201ENST00000606838 396 ntBASIC2.15□□□□□ -2.07
SKA3Q8IX90 AC098614.4-201ENST00000607601 462 ntBASIC2.15□□□□□ -2.07
SKA3Q8IX90 AL589743.7-201ENST00000612637 233 ntBASIC2.15□□□□□ -2.07
SKA3Q8IX90 AL157786.1-207ENST00000627771 695 ntBASIC2.15□□□□□ -2.07
SKA3Q8IX90 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
SKA3Q8IX90 Y_RNA.77-201ENST00000362962 107 ntBASIC2.14□□□□□ -2.07
SKA3Q8IX90 RNU6-179P-201ENST00000363350 107 ntBASIC2.14□□□□□ -2.07
SKA3Q8IX90 Y_RNA.367-201ENST00000365544 101 ntBASIC2.14□□□□□ -2.07
SKA3Q8IX90 RNU6-395P-201ENST00000365662 106 ntBASIC2.14□□□□□ -2.07
SKA3Q8IX90 Z98749.2-208ENST00000381646 500 ntBASIC2.14□□□□□ -2.07
SKA3Q8IX90 SNORA75B-201ENST00000384053 137 ntBASIC2.14□□□□□ -2.07
SKA3Q8IX90 RNU6-1072P-201ENST00000384703 107 ntBASIC2.14□□□□□ -2.07
SKA3Q8IX90 RNU6-443P-201ENST00000384780 107 ntBASIC2.14□□□□□ -2.07
SKA3Q8IX90 AL359511.1-201ENST00000402970 211 ntBASIC2.14□□□□□ -2.07
SKA3Q8IX90 BX295541.1-201ENST00000417774 250 ntBASIC2.14□□□□□ -2.07
SKA3Q8IX90 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.14□□□□□ -2.07
SKA3Q8IX90 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
SKA3Q8IX90 AL445687.1-201ENST00000439946 251 ntBASIC2.14□□□□□ -2.07
SKA3Q8IX90 KATNBL1P3-201ENST00000443475 909 ntBASIC2.14□□□□□ -2.07
SKA3Q8IX90 AL078601.1-201ENST00000444542 271 ntBASIC2.14□□□□□ -2.07
SKA3Q8IX90 AC011753.1-201ENST00000451001 220 ntBASIC2.14□□□□□ -2.07
SKA3Q8IX90 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
SKA3Q8IX90 KLF3P2-201ENST00000465138 268 ntBASIC2.14□□□□□ -2.07
SKA3Q8IX90 EIF4EP3-201ENST00000498782 656 ntBASIC2.14□□□□□ -2.07
SKA3Q8IX90 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC2.14□□□□□ -2.07
SKA3Q8IX90 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC2.14□□□□□ -2.07
SKA3Q8IX90 MTCO3P28-201ENST00000513351 515 ntBASIC2.14□□□□□ -2.07
SKA3Q8IX90 AC022447.1-201ENST00000515358 464 ntBASIC2.14□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 170.7 ms