Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC025755.1-201ENST00000521306 278 ntBASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 OR5AQ1P-201ENST00000527596 927 ntBASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 AP003034.1-201ENST00000534621 422 ntBASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 HSPE1P20-201ENST00000538133 289 ntBASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 BNIP3P6-201ENST00000549284 499 ntBASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 H3F3AP1-201ENST00000559984 334 ntBASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 HMGN2P15-201ENST00000585707 270 ntBASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 AP001330.5-201ENST00000607176 411 ntBASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 U1.23-201ENST00000610293 146 ntBASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 AC090517.2-201ENST00000614966 680 ntBASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 RNU1-68P-201ENST00000615382 146 ntBASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 U1.39-201ENST00000621562 146 ntBASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 MTND4P14-201ENST00000435799 1354 ntBASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
PDLIM3Q53GG5 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 MIR148B-201ENST00000362252 99 ntBASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 Y_RNA.38-201ENST00000362617 102 ntBASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 U8.9-201ENST00000365667 134 ntBASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 Y_RNA.453-201ENST00000384223 109 ntBASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 RNU6-1179P-201ENST00000384667 107 ntBASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 RNU6-903P-201ENST00000391270 109 ntBASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 RPS4XP7-201ENST00000406274 780 ntBASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 AL606923.1-201ENST00000406616 190 ntBASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 BX323014.1-201ENST00000412876 237 ntBASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 NDUFB4P5-201ENST00000415445 361 ntBASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 RPL21P90-201ENST00000415692 466 ntBASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 AL139415.2-201ENST00000431968 163 ntBASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 CST9LP2-201ENST00000437612 320 ntBASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 AC073415.1-201ENST00000449240 153 ntBASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 RPL26P9-201ENST00000457466 433 ntBASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 SNRPFP3-201ENST00000457792 225 ntBASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 TRBV12-1-201ENST00000479785 344 ntBASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 AL163973.1-201ENST00000484753 577 ntBASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 EIF4EP3-201ENST00000498782 656 ntBASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 AC098591.2-201ENST00000510152 315 ntBASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 AC105417.1-201ENST00000514691 285 ntBASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 RNU6-1038P-201ENST00000516516 104 ntBASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 RN7SKP219-201ENST00000516825 296 ntBASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 AC245166.1-201ENST00000521012 253 ntBASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 SARNP-203ENST00000552080 726 ntTSL 2 BASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 AC015917.1-201ENST00000579654 510 ntBASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 MIR4506-201ENST00000584693 77 ntBASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 AL160394.1-201ENST00000624765 724 ntBASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 AC005609.4-201ENST00000625071 447 ntBASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 CPD-202ENST00000543464 4007 ntTSL 2 BASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 AL354685.2-201ENST00000448218 1447 ntBASIC2.68□□□□□ -1.98
PDLIM3Q53GG5 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC2.67□□□□□ -1.98
PDLIM3Q53GG5 Y_RNA.9-201ENST00000362354 101 ntBASIC2.67□□□□□ -1.98
PDLIM3Q53GG5 Y_RNA.255-201ENST00000364581 97 ntBASIC2.67□□□□□ -1.98
PDLIM3Q53GG5 MDM4-202ENST00000367180 547 ntTSL 3 BASIC2.67□□□□□ -1.98
PDLIM3Q53GG5 Y_RNA.450-201ENST00000384198 113 ntBASIC2.67□□□□□ -1.98
PDLIM3Q53GG5 Y_RNA.481-201ENST00000384373 102 ntBASIC2.67□□□□□ -1.98
PDLIM3Q53GG5 MIR578-201ENST00000384828 96 ntBASIC2.67□□□□□ -1.98
PDLIM3Q53GG5 MIR627-201ENST00000384979 97 ntBASIC2.67□□□□□ -1.98
PDLIM3Q53GG5 MIR504-201ENST00000385065 83 ntBASIC2.67□□□□□ -1.98
PDLIM3Q53GG5 RNA5SP229-201ENST00000410809 99 ntBASIC2.67□□□□□ -1.98
PDLIM3Q53GG5 RNU6-1068P-201ENST00000410958 103 ntBASIC2.67□□□□□ -1.98
PDLIM3Q53GG5 RNU6-387P-201ENST00000411331 105 ntBASIC2.67□□□□□ -1.98
PDLIM3Q53GG5 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC2.67□□□□□ -1.98
PDLIM3Q53GG5 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC2.67□□□□□ -1.98
PDLIM3Q53GG5 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC2.67□□□□□ -1.98
PDLIM3Q53GG5 UBE2V1P8-201ENST00000437166 265 ntBASIC2.67□□□□□ -1.98
PDLIM3Q53GG5 AL714022.1-201ENST00000439897 151 ntBASIC2.67□□□□□ -1.98
PDLIM3Q53GG5 AL354936.1-201ENST00000441521 649 ntTSL 5 BASIC2.67□□□□□ -1.98
PDLIM3Q53GG5 AC010095.1-201ENST00000443543 144 ntBASIC2.67□□□□□ -1.98
PDLIM3Q53GG5 AL356010.1-201ENST00000456364 102 ntBASIC2.67□□□□□ -1.98
PDLIM3Q53GG5 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC2.67□□□□□ -1.98
PDLIM3Q53GG5 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC2.67□□□□□ -1.98
PDLIM3Q53GG5 GMFBP1-201ENST00000467831 427 ntBASIC2.67□□□□□ -1.98
PDLIM3Q53GG5 AC083798.1-201ENST00000472671 131 ntBASIC2.67□□□□□ -1.98
PDLIM3Q53GG5 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC2.67□□□□□ -1.98
PDLIM3Q53GG5 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC2.67□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 118.9 ms