Protein–RNA interactions for Protein: Q15858

SCN9A, Sodium channel protein type 9 subunit alpha, humanhuman

Predictions only

Length 1,988 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9AQ15858 CISD1P1-201ENST00000393907 327 ntBASIC1.42□□□□□ -2.18
SCN9AQ15858 AL109755.1-201ENST00000401791 649 ntBASIC1.42□□□□□ -2.18
SCN9AQ15858 RPS20P15-201ENST00000412792 311 ntBASIC1.42□□□□□ -2.18
SCN9AQ15858 EDDM3CP-201ENST00000415977 425 ntBASIC1.42□□□□□ -2.18
SCN9AQ15858 MTCO2P20-201ENST00000437339 673 ntBASIC1.42□□□□□ -2.18
SCN9AQ15858 ELOCP30-201ENST00000447108 299 ntBASIC1.42□□□□□ -2.18
SCN9AQ15858 PAXBP1P1-201ENST00000449315 447 ntBASIC1.42□□□□□ -2.18
SCN9AQ15858 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC1.42□□□□□ -2.18
SCN9AQ15858 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC1.42□□□□□ -2.18
SCN9AQ15858 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC1.42□□□□□ -2.18
SCN9AQ15858 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC1.42□□□□□ -2.18
SCN9AQ15858 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC1.42□□□□□ -2.18
SCN9AQ15858 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC1.42□□□□□ -2.18
SCN9AQ15858 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC1.42□□□□□ -2.18
SCN9AQ15858 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC1.42□□□□□ -2.18
SCN9AQ15858 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC1.42□□□□□ -2.18
SCN9AQ15858 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC1.42□□□□□ -2.18
SCN9AQ15858 AL132657.2-201ENST00000564417 358 ntBASIC1.42□□□□□ -2.18
SCN9AQ15858 MIR6788-201ENST00000618842 66 ntBASIC1.42□□□□□ -2.18
SCN9AQ15858 MIR6734-201ENST00000621166 68 ntBASIC1.42□□□□□ -2.18
SCN9AQ15858 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
SCN9AQ15858 AL512604.1-201ENST00000404812 257 ntBASIC1.41□□□□□ -2.18
SCN9AQ15858 BX119904.4-201ENST00000424402 301 ntBASIC1.41□□□□□ -2.18
SCN9AQ15858 ELOCP14-201ENST00000428070 331 ntBASIC1.41□□□□□ -2.18
SCN9AQ15858 AC004383.1-201ENST00000438135 289 ntBASIC1.41□□□□□ -2.18
SCN9AQ15858 ELOCP7-201ENST00000439968 331 ntBASIC1.41□□□□□ -2.18
SCN9AQ15858 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.41□□□□□ -2.18
SCN9AQ15858 MEMO1P3-201ENST00000459811 302 ntBASIC1.41□□□□□ -2.18
SCN9AQ15858 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC1.41□□□□□ -2.18
SCN9AQ15858 RNU6-583P-201ENST00000516012 92 ntBASIC1.41□□□□□ -2.18
SCN9AQ15858 RNU6-1225P-201ENST00000516336 65 ntBASIC1.41□□□□□ -2.18
SCN9AQ15858 AC104072.1-201ENST00000568817 668 ntBASIC1.41□□□□□ -2.18
SCN9AQ15858 AC008507.2-201ENST00000588402 1176 ntBASIC1.41□□□□□ -2.18
SCN9AQ15858 AL121652.1-201ENST00000608851 448 ntBASIC1.41□□□□□ -2.18
SCN9AQ15858 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC1.41□□□□□ -2.18
SCN9AQ15858 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC1.41□□□□□ -2.18
SCN9AQ15858 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
SCN9AQ15858 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
SCN9AQ15858 AL590084.1-201ENST00000407885 387 ntBASIC1.41□□□□□ -2.18
SCN9AQ15858 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC1.41□□□□□ -2.18
SCN9AQ15858 SRIP3-201ENST00000413200 219 ntBASIC1.41□□□□□ -2.18
SCN9AQ15858 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC1.41□□□□□ -2.18
SCN9AQ15858 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC1.41□□□□□ -2.18
SCN9AQ15858 MTND5P14-201ENST00000441481 1267 ntBASIC1.41□□□□□ -2.18
SCN9AQ15858 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC1.41□□□□□ -2.18
SCN9AQ15858 DDX3P2-201ENST00000446138 111 ntBASIC1.41□□□□□ -2.18
SCN9AQ15858 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC1.41□□□□□ -2.18
SCN9AQ15858 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC1.41□□□□□ -2.18
SCN9AQ15858 MTND1P16-201ENST00000465177 898 ntBASIC1.41□□□□□ -2.18
SCN9AQ15858 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC1.41□□□□□ -2.18
SCN9AQ15858 AF213884.2-201ENST00000510417 903 ntBASIC1.41□□□□□ -2.18
SCN9AQ15858 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.41□□□□□ -2.18
SCN9AQ15858 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC1.41□□□□□ -2.18
SCN9AQ15858 VBP1-203ENST00000535916 944 ntTSL 2 BASIC1.41□□□□□ -2.18
SCN9AQ15858 AL606834.3-201ENST00000602615 496 ntBASIC1.41□□□□□ -2.18
SCN9AQ15858 AC091057.3-201ENST00000602684 733 ntBASIC1.41□□□□□ -2.18
SCN9AQ15858 AL109918.3-201ENST00000603072 338 ntBASIC1.41□□□□□ -2.18
SCN9AQ15858 AL391813.1-201ENST00000603098 260 ntBASIC1.41□□□□□ -2.18
SCN9AQ15858 AC005296.1-201ENST00000616145 209 ntBASIC1.41□□□□□ -2.18
SCN9AQ15858 AL603758.1-201ENST00000618654 241 ntBASIC1.41□□□□□ -2.18
SCN9AQ15858 AC025048.6-202ENST00000627667 438 ntBASIC1.41□□□□□ -2.18
SCN9AQ15858 PCMTD1P7-201ENST00000634506 357 ntBASIC1.41□□□□□ -2.18
SCN9AQ15858 MIR3199-2-201ENST00000636243 86 ntBASIC1.41□□□□□ -2.18
SCN9AQ15858 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC1.4□□□□□ -2.18
SCN9AQ15858 MIR373-201ENST00000362273 69 ntBASIC1.4□□□□□ -2.19
SCN9AQ15858 SNORA40C-201ENST00000391285 128 ntBASIC1.4□□□□□ -2.19
SCN9AQ15858 TPMTP3-201ENST00000411928 735 ntBASIC1.4□□□□□ -2.19
SCN9AQ15858 RPL26P27-201ENST00000414397 437 ntBASIC1.4□□□□□ -2.19
SCN9AQ15858 Z80107.1-201ENST00000436830 412 ntBASIC1.4□□□□□ -2.19
SCN9AQ15858 AL078601.1-201ENST00000444542 271 ntBASIC1.4□□□□□ -2.19
SCN9AQ15858 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC1.4□□□□□ -2.19
SCN9AQ15858 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC1.4□□□□□ -2.19
SCN9AQ15858 AP001269.3-201ENST00000588718 329 ntBASIC1.4□□□□□ -2.19
SCN9AQ15858 AC008749.1-201ENST00000597650 306 ntBASIC1.4□□□□□ -2.19
SCN9AQ15858 AL161423.1-201ENST00000613700 262 ntBASIC1.4□□□□□ -2.19
SCN9AQ15858 PTP4A2-219ENST00000626355 606 ntTSL 5 BASIC1.4□□□□□ -2.19
SCN9AQ15858 AC008555.8-201ENST00000623602 2168 ntBASIC1.4□□□□□ -2.19
SCN9AQ15858 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
SCN9AQ15858 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
SCN9AQ15858 U8.3-201ENST00000363321 132 ntBASIC1.39□□□□□ -2.19
SCN9AQ15858 RNU6-97P-201ENST00000363387 104 ntBASIC1.39□□□□□ -2.19
SCN9AQ15858 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
SCN9AQ15858 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
SCN9AQ15858 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC1.39□□□□□ -2.19
SCN9AQ15858 ZNF886P-201ENST00000450781 723 ntBASIC1.39□□□□□ -2.19
SCN9AQ15858 FO393415.2-201ENST00000480085 343 ntBASIC1.39□□□□□ -2.19
SCN9AQ15858 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC1.39□□□□□ -2.19
SCN9AQ15858 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC1.39□□□□□ -2.19
SCN9AQ15858 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC1.39□□□□□ -2.19
SCN9AQ15858 AC021451.1-201ENST00000523498 1129 ntBASIC1.39□□□□□ -2.19
SCN9AQ15858 AC118273.2-201ENST00000532092 465 ntBASIC1.39□□□□□ -2.19
SCN9AQ15858 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC1.39□□□□□ -2.19
SCN9AQ15858 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC1.39□□□□□ -2.19
SCN9AQ15858 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.39□□□□□ -2.19
SCN9AQ15858 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC1.39□□□□□ -2.19
SCN9AQ15858 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC1.39□□□□□ -2.19
SCN9AQ15858 AC007038.2-201ENST00000608095 740 ntBASIC1.39□□□□□ -2.19
SCN9AQ15858 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
SCN9AQ15858 AP002791.1-201ENST00000623291 381 ntBASIC1.39□□□□□ -2.19
SCN9AQ15858 RNU6-343P-201ENST00000364709 104 ntBASIC1.39□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 124.2 ms