Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 AC012308.1-201ENST00000451232 178 ntBASIC4.29□□□□□ -1.72
SF3A1Q15459 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC4.29□□□□□ -1.72
SF3A1Q15459 AC130509.1-201ENST00000464158 433 ntBASIC4.29□□□□□ -1.72
SF3A1Q15459 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC4.29□□□□□ -1.72
SF3A1Q15459 RPL23AP49-201ENST00000492925 468 ntBASIC4.29□□□□□ -1.72
SF3A1Q15459 RN7SL323P-201ENST00000494712 295 ntBASIC4.29□□□□□ -1.72
SF3A1Q15459 MTCO1P29-201ENST00000496868 288 ntBASIC4.29□□□□□ -1.72
SF3A1Q15459 AC096745.1-201ENST00000509945 370 ntBASIC4.29□□□□□ -1.72
SF3A1Q15459 AC092436.3-201ENST00000511788 257 ntBASIC4.29□□□□□ -1.72
SF3A1Q15459 AC109479.2-201ENST00000517842 174 ntBASIC4.29□□□□□ -1.72
SF3A1Q15459 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC4.29□□□□□ -1.72
SF3A1Q15459 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC4.29□□□□□ -1.72
SF3A1Q15459 AC011611.1-201ENST00000552179 197 ntBASIC4.29□□□□□ -1.72
SF3A1Q15459 AC025281.1-201ENST00000567026 265 ntBASIC4.29□□□□□ -1.72
SF3A1Q15459 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC4.29□□□□□ -1.72
SF3A1Q15459 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC4.29□□□□□ -1.72
SF3A1Q15459 LARP7P1-201ENST00000605576 316 ntBASIC4.29□□□□□ -1.72
SF3A1Q15459 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC4.29□□□□□ -1.72
SF3A1Q15459 AC006133.1-201ENST00000617106 264 ntBASIC4.29□□□□□ -1.72
SF3A1Q15459 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
SF3A1Q15459 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
SF3A1Q15459 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
SF3A1Q15459 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
SF3A1Q15459 DLEU2_6.3-201ENST00000340052 136 ntBASIC4.28□□□□□ -1.72
SF3A1Q15459 Y_RNA.135-201ENST00000363439 95 ntBASIC4.28□□□□□ -1.72
SF3A1Q15459 RNU6-827P-201ENST00000365553 106 ntBASIC4.28□□□□□ -1.72
SF3A1Q15459 MT-TD-201ENST00000387419 68 ntBASIC4.28□□□□□ -1.72
SF3A1Q15459 MIR548F5-201ENST00000408421 86 ntBASIC4.28□□□□□ -1.72
SF3A1Q15459 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC4.28□□□□□ -1.72
SF3A1Q15459 AL590632.1-201ENST00000424289 371 ntBASIC4.28□□□□□ -1.72
SF3A1Q15459 RPL7P37-201ENST00000425095 738 ntBASIC4.28□□□□□ -1.72
SF3A1Q15459 UBE2V1P4-201ENST00000425374 344 ntBASIC4.28□□□□□ -1.72
SF3A1Q15459 AC107399.1-201ENST00000451226 265 ntBASIC4.28□□□□□ -1.72
SF3A1Q15459 AMD1P1-201ENST00000457220 922 ntBASIC4.28□□□□□ -1.72
SF3A1Q15459 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC4.28□□□□□ -1.72
SF3A1Q15459 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.28□□□□□ -1.72
SF3A1Q15459 RNU6-377P-201ENST00000515965 102 ntBASIC4.28□□□□□ -1.72
SF3A1Q15459 MIR3158-1-201ENST00000583596 81 ntBASIC4.28□□□□□ -1.72
SF3A1Q15459 DLEU2_6.2-201ENST00000620994 136 ntBASIC4.28□□□□□ -1.72
SF3A1Q15459 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC4.27□□□□□ -1.73
SF3A1Q15459 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
SF3A1Q15459 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
SF3A1Q15459 Y_RNA.529-201ENST00000384586 119 ntBASIC4.27□□□□□ -1.73
SF3A1Q15459 MIR670-201ENST00000390142 98 ntBASIC4.27□□□□□ -1.73
SF3A1Q15459 RNA5SP171-201ENST00000391071 115 ntBASIC4.27□□□□□ -1.73
SF3A1Q15459 AL391417.1-201ENST00000404100 426 ntBASIC4.27□□□□□ -1.73
SF3A1Q15459 SNORA3.3-201ENST00000408712 125 ntBASIC4.27□□□□□ -1.73
SF3A1Q15459 RNU2-41P-201ENST00000410991 178 ntBASIC4.27□□□□□ -1.73
SF3A1Q15459 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC4.27□□□□□ -1.73
SF3A1Q15459 NDUFB1P1-201ENST00000435191 180 ntBASIC4.27□□□□□ -1.73
SF3A1Q15459 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC4.27□□□□□ -1.73
SF3A1Q15459 MTND4P17-201ENST00000470444 350 ntBASIC4.27□□□□□ -1.73
SF3A1Q15459 MRPL42P6-201ENST00000486397 371 ntBASIC4.27□□□□□ -1.73
SF3A1Q15459 AK3P2-201ENST00000507976 429 ntBASIC4.27□□□□□ -1.73
SF3A1Q15459 AC008549.1-201ENST00000512900 643 ntBASIC4.27□□□□□ -1.73
SF3A1Q15459 SNORA67.7-201ENST00000516664 135 ntBASIC4.27□□□□□ -1.73
SF3A1Q15459 RNU1-45P-201ENST00000517191 141 ntBASIC4.27□□□□□ -1.73
SF3A1Q15459 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC4.27□□□□□ -1.73
SF3A1Q15459 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
SF3A1Q15459 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC4.27□□□□□ -1.73
SF3A1Q15459 AC007151.1-201ENST00000572774 483 ntBASIC4.27□□□□□ -1.73
SF3A1Q15459 AC100830.2-201ENST00000581636 240 ntBASIC4.27□□□□□ -1.73
SF3A1Q15459 FGF7P1-201ENST00000582820 288 ntBASIC4.27□□□□□ -1.73
SF3A1Q15459 KLKP1-201ENST00000595979 403 ntBASIC4.27□□□□□ -1.73
SF3A1Q15459 AL670379.10-201ENST00000604330 253 ntBASIC4.27□□□□□ -1.73
SF3A1Q15459 AL670379.9-201ENST00000605428 253 ntBASIC4.27□□□□□ -1.73
SF3A1Q15459 AC064836.2-201ENST00000609491 462 ntBASIC4.27□□□□□ -1.73
SF3A1Q15459 MIR6875-201ENST00000617506 72 ntBASIC4.27□□□□□ -1.73
SF3A1Q15459 U7.8-201ENST00000619968 63 ntBASIC4.27□□□□□ -1.73
SF3A1Q15459 AC104985.2-201ENST00000620598 500 ntBASIC4.27□□□□□ -1.73
SF3A1Q15459 AC092628.2-201ENST00000622492 339 ntBASIC4.27□□□□□ -1.73
SF3A1Q15459 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC4.27□□□□□ -1.73
SF3A1Q15459 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC4.27□□□□□ -1.73
SF3A1Q15459 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC4.26□□□□□ -1.73
SF3A1Q15459 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
SF3A1Q15459 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
SF3A1Q15459 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
SF3A1Q15459 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
SF3A1Q15459 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
SF3A1Q15459 RNU6-799P-201ENST00000363567 107 ntBASIC4.26□□□□□ -1.73
SF3A1Q15459 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
SF3A1Q15459 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
SF3A1Q15459 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
SF3A1Q15459 FTH1P15-201ENST00000406984 280 ntBASIC4.26□□□□□ -1.73
SF3A1Q15459 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC4.26□□□□□ -1.73
SF3A1Q15459 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC4.26□□□□□ -1.73
SF3A1Q15459 RPL21P40-201ENST00000428586 483 ntBASIC4.26□□□□□ -1.73
SF3A1Q15459 AC097713.2-201ENST00000430199 356 ntBASIC4.26□□□□□ -1.73
SF3A1Q15459 RPS15AP10-201ENST00000432472 382 ntBASIC4.26□□□□□ -1.73
SF3A1Q15459 RN7SL542P-201ENST00000467147 294 ntBASIC4.26□□□□□ -1.73
SF3A1Q15459 RPS27P26-201ENST00000494583 239 ntBASIC4.26□□□□□ -1.73
SF3A1Q15459 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC4.26□□□□□ -1.73
SF3A1Q15459 MTND3P22-201ENST00000510932 243 ntBASIC4.26□□□□□ -1.73
SF3A1Q15459 SNORA43.2-201ENST00000516652 128 ntBASIC4.26□□□□□ -1.73
SF3A1Q15459 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC4.26□□□□□ -1.73
SF3A1Q15459 AC008011.1-201ENST00000545989 227 ntBASIC4.26□□□□□ -1.73
SF3A1Q15459 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC4.26□□□□□ -1.73
SF3A1Q15459 UBE2Q2P8-201ENST00000560644 102 ntBASIC4.26□□□□□ -1.73
SF3A1Q15459 AC010653.1-201ENST00000571108 881 ntBASIC4.26□□□□□ -1.73
SF3A1Q15459 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms