Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AC078814.3-201ENST00000553036 491 ntBASIC3.28□□□□□ -1.88
CTCFP49711 EIF1P4-201ENST00000572664 335 ntBASIC3.28□□□□□ -1.88
CTCFP49711 RPL23AP78-201ENST00000599928 470 ntBASIC3.28□□□□□ -1.88
CTCFP49711 AC025449.1-201ENST00000603896 529 ntBASIC3.28□□□□□ -1.88
CTCFP49711 FTX_3.1-201ENST00000610451 147 ntBASIC3.28□□□□□ -1.88
CTCFP49711 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC3.28□□□□□ -1.88
CTCFP49711 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.28□□□□□ -1.88
CTCFP49711 MTND5P29-201ENST00000458676 1807 ntBASIC3.28□□□□□ -1.88
CTCFP49711 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
CTCFP49711 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC3.27□□□□□ -1.89
CTCFP49711 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.27□□□□□ -1.89
CTCFP49711 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
CTCFP49711 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC3.27□□□□□ -1.89
CTCFP49711 RNU6-1159P-201ENST00000362933 107 ntBASIC3.27□□□□□ -1.89
CTCFP49711 RNU1-112P-201ENST00000364401 164 ntBASIC3.27□□□□□ -1.89
CTCFP49711 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
CTCFP49711 RNA5SP21-201ENST00000410917 96 ntBASIC3.27□□□□□ -1.89
CTCFP49711 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC3.27□□□□□ -1.89
CTCFP49711 MTATP6P18-201ENST00000417994 673 ntBASIC3.27□□□□□ -1.89
CTCFP49711 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC3.27□□□□□ -1.89
CTCFP49711 AC099548.1-201ENST00000421443 426 ntBASIC3.27□□□□□ -1.89
CTCFP49711 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.27□□□□□ -1.89
CTCFP49711 HMGN2P30-201ENST00000423237 256 ntBASIC3.27□□□□□ -1.89
CTCFP49711 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC3.27□□□□□ -1.89
CTCFP49711 AL365496.1-201ENST00000426885 215 ntBASIC3.27□□□□□ -1.89
CTCFP49711 AL592045.1-201ENST00000429867 352 ntBASIC3.27□□□□□ -1.89
CTCFP49711 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC3.27□□□□□ -1.89
CTCFP49711 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC3.27□□□□□ -1.89
CTCFP49711 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CTCFP49711 RPL37P4-201ENST00000448908 268 ntBASIC3.27□□□□□ -1.89
CTCFP49711 AC093899.1-201ENST00000457984 376 ntBASIC3.27□□□□□ -1.89
CTCFP49711 RPL9P6-201ENST00000492764 598 ntBASIC3.27□□□□□ -1.89
CTCFP49711 AC107401.1-201ENST00000503426 685 ntBASIC3.27□□□□□ -1.89
CTCFP49711 AC010493.1-201ENST00000513479 292 ntBASIC3.27□□□□□ -1.89
CTCFP49711 Y_RNA.689-201ENST00000516589 107 ntBASIC3.27□□□□□ -1.89
CTCFP49711 AC109329.2-201ENST00000519658 482 ntBASIC3.27□□□□□ -1.89
CTCFP49711 AC245505.1-201ENST00000556398 224 ntBASIC3.27□□□□□ -1.89
CTCFP49711 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.27□□□□□ -1.89
CTCFP49711 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC3.27□□□□□ -1.89
CTCFP49711 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC3.27□□□□□ -1.89
CTCFP49711 SRP54-214ENST00000630962 162 ntTSL 5 BASIC3.27□□□□□ -1.89
CTCFP49711 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CTCFP49711 MTND5P17-201ENST00000418405 1603 ntBASIC3.26□□□□□ -1.89
CTCFP49711 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC3.26□□□□□ -1.89
CTCFP49711 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
CTCFP49711 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
CTCFP49711 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.26□□□□□ -1.89
CTCFP49711 RNU6-179P-201ENST00000363350 107 ntBASIC3.26□□□□□ -1.89
CTCFP49711 RNU6-198P-201ENST00000384258 104 ntBASIC3.26□□□□□ -1.89
CTCFP49711 SNORA46-201ENST00000384762 135 ntBASIC3.26□□□□□ -1.89
CTCFP49711 RNU4-55P-201ENST00000410731 137 ntBASIC3.26□□□□□ -1.89
CTCFP49711 RBM6-203ENST00000421682 684 ntTSL 2 BASIC3.26□□□□□ -1.89
CTCFP49711 DPH3P2-201ENST00000422618 250 ntBASIC3.26□□□□□ -1.89
CTCFP49711 GPM6BP2-201ENST00000432046 144 ntBASIC3.26□□□□□ -1.89
CTCFP49711 AC002486.1-201ENST00000435098 391 ntBASIC3.26□□□□□ -1.89
CTCFP49711 SNRPEP9-201ENST00000436794 238 ntBASIC3.26□□□□□ -1.89
CTCFP49711 AL714022.1-201ENST00000439897 151 ntBASIC3.26□□□□□ -1.89
CTCFP49711 DDX3P2-201ENST00000446138 111 ntBASIC3.26□□□□□ -1.89
CTCFP49711 GPM6BP1-201ENST00000446387 144 ntBASIC3.26□□□□□ -1.89
CTCFP49711 AC022364.2-201ENST00000457963 554 ntBASIC3.26□□□□□ -1.89
CTCFP49711 RNU7-23P-201ENST00000459465 62 ntBASIC3.26□□□□□ -1.89
CTCFP49711 RPL37P6-201ENST00000460682 294 ntBASIC3.26□□□□□ -1.89
CTCFP49711 SUMO2P6-201ENST00000505273 288 ntBASIC3.26□□□□□ -1.89
CTCFP49711 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC3.26□□□□□ -1.89
CTCFP49711 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC3.26□□□□□ -1.89
CTCFP49711 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.26□□□□□ -1.89
CTCFP49711 AC068135.2-201ENST00000569293 1028 ntBASIC3.26□□□□□ -1.89
CTCFP49711 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.26□□□□□ -1.89
CTCFP49711 MIR4781-201ENST00000585250 76 ntBASIC3.26□□□□□ -1.89
CTCFP49711 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.26□□□□□ -1.89
CTCFP49711 AC004805.2-201ENST00000605382 482 ntBASIC3.26□□□□□ -1.89
CTCFP49711 AC007684.1-201ENST00000609671 477 ntBASIC3.26□□□□□ -1.89
CTCFP49711 AC012409.4-201ENST00000612923 249 ntBASIC3.26□□□□□ -1.89
CTCFP49711 AL161629.2-201ENST00000615347 275 ntBASIC3.26□□□□□ -1.89
CTCFP49711 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC3.26□□□□□ -1.89
CTCFP49711 AL359740.1-201ENST00000624340 592 ntBASIC3.26□□□□□ -1.89
CTCFP49711 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC3.26□□□□□ -1.89
CTCFP49711 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.26□□□□□ -1.89
CTCFP49711 MAPK10-266ENST00000641066 6555 ntBASIC3.26□□□□□ -1.89
CTCFP49711 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
CTCFP49711 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.25□□□□□ -1.89
CTCFP49711 AC103710.2-202ENST00000641454 2853 ntBASIC3.25□□□□□ -1.89
CTCFP49711 Y_RNA.1-201ENST00000352915 104 ntBASIC3.25□□□□□ -1.89
CTCFP49711 RNA5SP289-201ENST00000362332 137 ntBASIC3.25□□□□□ -1.89
CTCFP49711 SNORD114-1-201ENST00000362705 72 ntBASIC3.25□□□□□ -1.89
CTCFP49711 Y_RNA.140-201ENST00000363474 103 ntBASIC3.25□□□□□ -1.89
CTCFP49711 U8.9-201ENST00000365667 134 ntBASIC3.25□□□□□ -1.89
CTCFP49711 MIR454-201ENST00000390180 115 ntBASIC3.25□□□□□ -1.89
CTCFP49711 AL139039.1-201ENST00000401900 692 ntBASIC3.25□□□□□ -1.89
CTCFP49711 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC3.25□□□□□ -1.89
CTCFP49711 RPL23AP58-201ENST00000440453 469 ntBASIC3.25□□□□□ -1.89
CTCFP49711 snoU13.28-201ENST00000459235 104 ntBASIC3.25□□□□□ -1.89
CTCFP49711 RNU6-123P-201ENST00000516163 102 ntBASIC3.25□□□□□ -1.89
CTCFP49711 RNU6-914P-201ENST00000516749 109 ntBASIC3.25□□□□□ -1.89
CTCFP49711 UTP23-205ENST00000520733 369 ntTSL 3 BASIC3.25□□□□□ -1.89
CTCFP49711 AL359212.1-201ENST00000556608 614 ntBASIC3.25□□□□□ -1.89
CTCFP49711 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.25□□□□□ -1.89
CTCFP49711 AL627309.6-201ENST00000606857 840 ntBASIC3.25□□□□□ -1.89
CTCFP49711 AP001486.3-201ENST00000615334 372 ntBASIC3.25□□□□□ -1.89
CTCFP49711 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 111.9 ms