Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RNU6-971P-201ENST00000516920 106 ntBASIC4.61□□□□□ -1.67
MSX1P28360 RNU6-703P-201ENST00000516946 107 ntBASIC4.61□□□□□ -1.67
MSX1P28360 CYCSP23-201ENST00000519781 313 ntBASIC4.61□□□□□ -1.67
MSX1P28360 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC4.61□□□□□ -1.67
MSX1P28360 LINC00933-203ENST00000559812 219 ntBASIC4.61□□□□□ -1.67
MSX1P28360 MIR4697-201ENST00000582977 78 ntBASIC4.61□□□□□ -1.67
MSX1P28360 AC053481.4-201ENST00000583164 216 ntBASIC4.61□□□□□ -1.67
MSX1P28360 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC4.61□□□□□ -1.67
MSX1P28360 AC136601.2-201ENST00000604356 474 ntBASIC4.61□□□□□ -1.67
MSX1P28360 AC010999.1-201ENST00000611856 324 ntBASIC4.61□□□□□ -1.67
MSX1P28360 MIR378J-201ENST00000611988 109 ntBASIC4.61□□□□□ -1.67
MSX1P28360 AC092628.2-201ENST00000622492 339 ntBASIC4.61□□□□□ -1.67
MSX1P28360 AL450326.2-201ENST00000421913 1962 ntBASIC4.61□□□□□ -1.67
MSX1P28360 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
MSX1P28360 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
MSX1P28360 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
MSX1P28360 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
MSX1P28360 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
MSX1P28360 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
MSX1P28360 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
MSX1P28360 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
MSX1P28360 AL139811.1-201ENST00000424779 2299 ntBASIC4.61□□□□□ -1.67
MSX1P28360 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
MSX1P28360 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.6□□□□□ -1.67
MSX1P28360 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.6□□□□□ -1.67
MSX1P28360 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
MSX1P28360 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
MSX1P28360 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
MSX1P28360 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.6□□□□□ -1.67
MSX1P28360 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
MSX1P28360 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC4.6□□□□□ -1.67
MSX1P28360 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
MSX1P28360 AC018529.3-201ENST00000624212 2254 ntBASIC4.6□□□□□ -1.67
MSX1P28360 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
MSX1P28360 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
MSX1P28360 Y_RNA.71-201ENST00000362892 104 ntBASIC4.6□□□□□ -1.67
MSX1P28360 RNU6-1325P-201ENST00000364905 105 ntBASIC4.6□□□□□ -1.67
MSX1P28360 Z98749.2-208ENST00000381646 500 ntBASIC4.6□□□□□ -1.67
MSX1P28360 SNORD116-14-201ENST00000383894 92 ntBASIC4.6□□□□□ -1.67
MSX1P28360 SNORD116-17-201ENST00000383929 92 ntBASIC4.6□□□□□ -1.67
MSX1P28360 SNORD116-15-201ENST00000384445 92 ntBASIC4.6□□□□□ -1.67
MSX1P28360 SNORD116-20-201ENST00000384529 92 ntBASIC4.6□□□□□ -1.67
MSX1P28360 SNORD116-19-201ENST00000384729 92 ntBASIC4.6□□□□□ -1.67
MSX1P28360 RNU6-1248P-201ENST00000391096 64 ntBASIC4.6□□□□□ -1.67
MSX1P28360 AL590139.1-201ENST00000416267 400 ntBASIC4.6□□□□□ -1.67
MSX1P28360 AC138623.1-201ENST00000418060 216 ntBASIC4.6□□□□□ -1.67
MSX1P28360 OR2AM1P-201ENST00000422137 422 ntBASIC4.6□□□□□ -1.67
MSX1P28360 RPL7AP25-201ENST00000423357 805 ntBASIC4.6□□□□□ -1.67
MSX1P28360 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC4.6□□□□□ -1.67
MSX1P28360 MTND4LP9-201ENST00000427694 174 ntBASIC4.6□□□□□ -1.67
MSX1P28360 TEX41-205ENST00000431734 529 ntTSL 4 BASIC4.6□□□□□ -1.67
MSX1P28360 RPS29P9-201ENST00000440360 171 ntBASIC4.6□□□□□ -1.67
MSX1P28360 TPT1P12-201ENST00000448968 492 ntBASIC4.6□□□□□ -1.67
MSX1P28360 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC4.6□□□□□ -1.67
MSX1P28360 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC4.6□□□□□ -1.67
MSX1P28360 ENPP7P11-201ENST00000505915 627 ntBASIC4.6□□□□□ -1.67
MSX1P28360 RNU6-1183P-201ENST00000517054 60 ntBASIC4.6□□□□□ -1.67
MSX1P28360 AC008033.2-201ENST00000542626 177 ntBASIC4.6□□□□□ -1.67
MSX1P28360 BNIP3P1-201ENST00000547295 580 ntBASIC4.6□□□□□ -1.67
MSX1P28360 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC4.6□□□□□ -1.67
MSX1P28360 BX005214.3-202ENST00000619809 325 ntBASIC4.6□□□□□ -1.67
MSX1P28360 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC4.6□□□□□ -1.67
MSX1P28360 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.6□□□□□ -1.67
MSX1P28360 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC4.6□□□□□ -1.67
MSX1P28360 AL450345.1-202ENST00000605741 3881 ntBASIC4.6□□□□□ -1.67
MSX1P28360 OR14L1P-202ENST00000641545 3009 ntBASIC4.59□□□□□ -1.67
MSX1P28360 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.67
MSX1P28360 Y_RNA.101-201ENST00000363154 102 ntBASIC4.59□□□□□ -1.67
MSX1P28360 MIR518D-201ENST00000385014 87 ntBASIC4.59□□□□□ -1.67
MSX1P28360 SNORA77-201ENST00000408716 125 ntBASIC4.59□□□□□ -1.67
MSX1P28360 EBAG9P1-201ENST00000418955 543 ntBASIC4.59□□□□□ -1.67
MSX1P28360 AC244098.2-201ENST00000422068 99 ntBASIC4.59□□□□□ -1.67
MSX1P28360 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC4.59□□□□□ -1.67
MSX1P28360 IFNWP4-201ENST00000453148 294 ntBASIC4.59□□□□□ -1.67
MSX1P28360 AURKAPS2-201ENST00000454983 333 ntBASIC4.59□□□□□ -1.67
MSX1P28360 RNU6-625P-201ENST00000459412 107 ntBASIC4.59□□□□□ -1.67
MSX1P28360 RNA5SP103-201ENST00000459503 118 ntBASIC4.59□□□□□ -1.67
MSX1P28360 AC073073.1-201ENST00000493920 463 ntBASIC4.59□□□□□ -1.67
MSX1P28360 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC4.59□□□□□ -1.67
MSX1P28360 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC4.59□□□□□ -1.67
MSX1P28360 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC4.59□□□□□ -1.67
MSX1P28360 AC107918.3-201ENST00000533272 382 ntBASIC4.59□□□□□ -1.67
MSX1P28360 AC136624.4-201ENST00000573044 370 ntBASIC4.59□□□□□ -1.67
MSX1P28360 RNA5SP108-201ENST00000605921 117 ntBASIC4.59□□□□□ -1.67
MSX1P28360 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC4.59□□□□□ -1.68
MSX1P28360 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.68
MSX1P28360 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.58□□□□□ -1.68
MSX1P28360 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.58□□□□□ -1.68
MSX1P28360 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
MSX1P28360 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
MSX1P28360 SMG1P4-204ENST00000523028 4131 ntBASIC4.58□□□□□ -1.68
MSX1P28360 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
MSX1P28360 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
MSX1P28360 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
MSX1P28360 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
MSX1P28360 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.58□□□□□ -1.68
MSX1P28360 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
MSX1P28360 RNU5F-3P-201ENST00000363767 117 ntBASIC4.58□□□□□ -1.68
MSX1P28360 RNU6-873P-201ENST00000363833 107 ntBASIC4.58□□□□□ -1.68
MSX1P28360 RNA5SP455-201ENST00000365190 119 ntBASIC4.58□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 165 ms