Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
COL9A1P20849 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL9A1P20849 RNA5SP428-201ENST00000365129 132 ntBASIC5.32□□□□□ -1.56
COL9A1P20849 Y_RNA.346-201ENST00000365385 112 ntBASIC5.32□□□□□ -1.56
COL9A1P20849 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC5.32□□□□□ -1.56
COL9A1P20849 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC5.32□□□□□ -1.56
COL9A1P20849 H3F3BP1-201ENST00000440551 403 ntBASIC5.32□□□□□ -1.56
COL9A1P20849 PHBP16-201ENST00000446318 950 ntBASIC5.32□□□□□ -1.56
COL9A1P20849 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
COL9A1P20849 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC5.32□□□□□ -1.56
COL9A1P20849 SNORA31.20-201ENST00000517111 133 ntBASIC5.32□□□□□ -1.56
COL9A1P20849 RN7SL690P-201ENST00000582087 240 ntBASIC5.32□□□□□ -1.56
COL9A1P20849 uc_338.28-201ENST00000612082 187 ntBASIC5.32□□□□□ -1.56
COL9A1P20849 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
COL9A1P20849 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
COL9A1P20849 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
COL9A1P20849 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL9A1P20849 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
COL9A1P20849 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
COL9A1P20849 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
COL9A1P20849 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC5.32□□□□□ -1.56
COL9A1P20849 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
COL9A1P20849 AP001642.1-201ENST00000624727 2117 ntBASIC5.32□□□□□ -1.56
COL9A1P20849 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
COL9A1P20849 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC5.32□□□□□ -1.56
COL9A1P20849 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC5.31□□□□□ -1.56
COL9A1P20849 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
COL9A1P20849 TECRL-201ENST00000381210 3573 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL9A1P20849 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL9A1P20849 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL9A1P20849 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.31□□□□□ -1.56
COL9A1P20849 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC5.31□□□□□ -1.56
COL9A1P20849 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
COL9A1P20849 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC5.31□□□□□ -1.56
COL9A1P20849 ADAM3A-203ENST00000461344 2157 ntBASIC5.31□□□□□ -1.56
COL9A1P20849 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.31□□□□□ -1.56
COL9A1P20849 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL9A1P20849 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
COL9A1P20849 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
COL9A1P20849 RNU6-647P-201ENST00000364243 107 ntBASIC5.31□□□□□ -1.56
COL9A1P20849 RNU6-140P-201ENST00000384566 108 ntBASIC5.31□□□□□ -1.56
COL9A1P20849 Y_RNA.558-201ENST00000384685 113 ntBASIC5.31□□□□□ -1.56
COL9A1P20849 MIR129-1-201ENST00000384972 72 ntBASIC5.31□□□□□ -1.56
COL9A1P20849 AC092047.1-201ENST00000424997 240 ntBASIC5.31□□□□□ -1.56
COL9A1P20849 AC006028.1-201ENST00000438379 402 ntBASIC5.31□□□□□ -1.56
COL9A1P20849 RPL31P41-201ENST00000477967 372 ntBASIC5.31□□□□□ -1.56
COL9A1P20849 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC5.31□□□□□ -1.56
COL9A1P20849 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC5.31□□□□□ -1.56
COL9A1P20849 RN7SL244P-201ENST00000493405 297 ntBASIC5.31□□□□□ -1.56
COL9A1P20849 AC108145.1-201ENST00000503770 153 ntBASIC5.31□□□□□ -1.56
COL9A1P20849 CYP4A27P-201ENST00000567218 190 ntBASIC5.31□□□□□ -1.56
COL9A1P20849 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
COL9A1P20849 AC015813.4-201ENST00000610469 179 ntBASIC5.31□□□□□ -1.56
COL9A1P20849 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
COL9A1P20849 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
COL9A1P20849 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL9A1P20849 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL9A1P20849 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL9A1P20849 AL034549.2-201ENST00000618285 3373 ntBASIC5.3□□□□□ -1.56
COL9A1P20849 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.3□□□□□ -1.56
COL9A1P20849 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL9A1P20849 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COL9A1P20849 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
COL9A1P20849 DCN-218ENST00000551354 2924 ntTSL 3 BASIC5.3□□□□□ -1.56
COL9A1P20849 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL9A1P20849 U8.1-201ENST00000362843 134 ntBASIC5.3□□□□□ -1.56
COL9A1P20849 RNU6-1164P-201ENST00000364428 107 ntBASIC5.3□□□□□ -1.56
COL9A1P20849 Y_RNA.415-201ENST00000384012 112 ntBASIC5.3□□□□□ -1.56
COL9A1P20849 AL512604.1-201ENST00000404812 257 ntBASIC5.3□□□□□ -1.56
COL9A1P20849 Y_RNA.617-201ENST00000410920 90 ntBASIC5.3□□□□□ -1.56
COL9A1P20849 AC019205.3-201ENST00000424573 156 ntBASIC5.3□□□□□ -1.56
COL9A1P20849 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.3□□□□□ -1.56
COL9A1P20849 LINC02210-201ENST00000444561 288 ntBASIC5.3□□□□□ -1.56
COL9A1P20849 RPL37P4-201ENST00000448908 268 ntBASIC5.3□□□□□ -1.56
COL9A1P20849 Y_RNA.649-201ENST00000459077 103 ntBASIC5.3□□□□□ -1.56
COL9A1P20849 snoU13.29-201ENST00000459370 104 ntBASIC5.3□□□□□ -1.56
COL9A1P20849 AC006517.1-201ENST00000480485 328 ntBASIC5.3□□□□□ -1.56
COL9A1P20849 AC091912.1-201ENST00000511351 248 ntBASIC5.3□□□□□ -1.56
COL9A1P20849 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC5.3□□□□□ -1.56
COL9A1P20849 AP004371.1-201ENST00000525240 214 ntBASIC5.3□□□□□ -1.56
COL9A1P20849 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC5.3□□□□□ -1.56
COL9A1P20849 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC5.3□□□□□ -1.56
COL9A1P20849 U2.21-201ENST00000637295 81 ntBASIC5.3□□□□□ -1.56
COL9A1P20849 AL592437.2-201ENST00000421655 2434 ntBASIC5.3□□□□□ -1.56
COL9A1P20849 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COL9A1P20849 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL9A1P20849 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.3□□□□□ -1.56
COL9A1P20849 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
COL9A1P20849 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC5.3□□□□□ -1.56
COL9A1P20849 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
COL9A1P20849 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
COL9A1P20849 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC5.29□□□□□ -1.56
COL9A1P20849 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL9A1P20849 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL9A1P20849 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL9A1P20849 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
COL9A1P20849 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.29□□□□□ -1.56
COL9A1P20849 Z82209.1-201ENST00000422141 2135 ntBASIC5.29□□□□□ -1.56
COL9A1P20849 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
COL9A1P20849 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms