Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RNU6-512P-201ENST00000364438 103 ntBASIC2.86□□□□□ -1.95
MSH3P20585 SNORA44-201ENST00000384584 132 ntBASIC2.86□□□□□ -1.95
MSH3P20585 RNU4-46P-201ENST00000410818 138 ntBASIC2.86□□□□□ -1.95
MSH3P20585 OR9R1P-201ENST00000412200 877 ntBASIC2.86□□□□□ -1.95
MSH3P20585 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC2.86□□□□□ -1.95
MSH3P20585 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC2.86□□□□□ -1.95
MSH3P20585 MTCO3P18-201ENST00000440206 761 ntBASIC2.86□□□□□ -1.95
MSH3P20585 PIGFP3-201ENST00000441918 722 ntBASIC2.86□□□□□ -1.95
MSH3P20585 RPL21P41-201ENST00000459863 264 ntBASIC2.86□□□□□ -1.95
MSH3P20585 AC104472.2-201ENST00000469035 601 ntBASIC2.86□□□□□ -1.95
MSH3P20585 RPL30P5-201ENST00000494923 336 ntBASIC2.86□□□□□ -1.95
MSH3P20585 EIF4EP3-201ENST00000498782 656 ntBASIC2.86□□□□□ -1.95
MSH3P20585 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC2.86□□□□□ -1.95
MSH3P20585 AC006445.2-201ENST00000510061 472 ntBASIC2.86□□□□□ -1.95
MSH3P20585 RNU6-914P-201ENST00000516749 109 ntBASIC2.86□□□□□ -1.95
MSH3P20585 SNORD60.2-201ENST00000516883 86 ntBASIC2.86□□□□□ -1.95
MSH3P20585 TRAV28-201ENST00000557548 323 ntBASIC2.86□□□□□ -1.95
MSH3P20585 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.86□□□□□ -1.95
MSH3P20585 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC2.86□□□□□ -1.95
MSH3P20585 NRBF2P5-201ENST00000603087 788 ntBASIC2.86□□□□□ -1.95
MSH3P20585 MIR15A-201ENST00000607334 83 ntBASIC2.86□□□□□ -1.95
MSH3P20585 AC107294.1-201ENST00000609524 467 ntBASIC2.86□□□□□ -1.95
MSH3P20585 AC090115.4-201ENST00000609970 188 ntBASIC2.86□□□□□ -1.95
MSH3P20585 UBE2Q2P6-201ENST00000612666 153 ntBASIC2.86□□□□□ -1.95
MSH3P20585 AL138880.2-201ENST00000616214 239 ntBASIC2.86□□□□□ -1.95
MSH3P20585 AP003122.6-201ENST00000623831 495 ntBASIC2.86□□□□□ -1.95
MSH3P20585 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC2.86□□□□□ -1.95
MSH3P20585 MIR3662-201ENST00000637030 95 ntBASIC2.86□□□□□ -1.95
MSH3P20585 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
MSH3P20585 ASNSP3-201ENST00000451989 1306 ntBASIC2.86□□□□□ -1.95
MSH3P20585 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC2.86□□□□□ -1.95
MSH3P20585 GABRG2-229ENST00000641017 3628 ntBASIC2.86□□□□□ -1.95
MSH3P20585 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
MSH3P20585 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC2.85□□□□□ -1.95
MSH3P20585 Y_RNA.88-201ENST00000363029 99 ntBASIC2.85□□□□□ -1.95
MSH3P20585 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC2.85□□□□□ -1.95
MSH3P20585 RNA5SP252-201ENST00000391131 119 ntBASIC2.85□□□□□ -1.95
MSH3P20585 CISD1P1-201ENST00000393907 327 ntBASIC2.85□□□□□ -1.95
MSH3P20585 SNORD88.1-201ENST00000408684 91 ntBASIC2.85□□□□□ -1.95
MSH3P20585 RNU6-193P-201ENST00000410977 107 ntBASIC2.85□□□□□ -1.95
MSH3P20585 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC2.85□□□□□ -1.95
MSH3P20585 AC080125.1-201ENST00000414888 684 ntBASIC2.85□□□□□ -1.95
MSH3P20585 RPL30P16-201ENST00000419341 429 ntBASIC2.85□□□□□ -1.95
MSH3P20585 AL139281.1-201ENST00000422120 335 ntBASIC2.85□□□□□ -1.95
MSH3P20585 MTND4LP11-201ENST00000422184 280 ntBASIC2.85□□□□□ -1.95
MSH3P20585 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC2.85□□□□□ -1.95
MSH3P20585 AC092047.1-201ENST00000424997 240 ntBASIC2.85□□□□□ -1.95
MSH3P20585 AC007919.1-201ENST00000429380 217 ntBASIC2.85□□□□□ -1.95
MSH3P20585 RPL36AP53-201ENST00000432891 316 ntBASIC2.85□□□□□ -1.95
MSH3P20585 MTATP6P23-201ENST00000440153 476 ntBASIC2.85□□□□□ -1.95
MSH3P20585 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.85□□□□□ -1.95
MSH3P20585 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.85□□□□□ -1.95
MSH3P20585 RPL37P4-201ENST00000448908 268 ntBASIC2.85□□□□□ -1.95
MSH3P20585 SNRPFP3-201ENST00000457792 225 ntBASIC2.85□□□□□ -1.95
MSH3P20585 KC877373.1-201ENST00000479066 408 ntBASIC2.85□□□□□ -1.95
MSH3P20585 RPL38P4-201ENST00000502376 214 ntBASIC2.85□□□□□ -1.95
MSH3P20585 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC2.85□□□□□ -1.95
MSH3P20585 RNU4-29P-201ENST00000515943 174 ntBASIC2.85□□□□□ -1.95
MSH3P20585 RNU6-56P-201ENST00000516986 93 ntBASIC2.85□□□□□ -1.95
MSH3P20585 APAF1-207ENST00000547743 651 ntTSL 3 BASIC2.85□□□□□ -1.95
MSH3P20585 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC2.85□□□□□ -1.95
MSH3P20585 AL035413.2-201ENST00000604801 525 ntBASIC2.85□□□□□ -1.95
MSH3P20585 AL670379.4-201ENST00000605279 254 ntBASIC2.85□□□□□ -1.95
MSH3P20585 AL627309.6-201ENST00000606857 840 ntBASIC2.85□□□□□ -1.95
MSH3P20585 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.85□□□□□ -1.95
MSH3P20585 AC099654.14-201ENST00000638599 341 ntBASIC2.85□□□□□ -1.95
MSH3P20585 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.85□□□□□ -1.95
MSH3P20585 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
MSH3P20585 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.85□□□□□ -1.95
MSH3P20585 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2.85□□□□□ -1.95
MSH3P20585 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC2.85□□□□□ -1.95
MSH3P20585 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.84□□□□□ -1.95
MSH3P20585 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.84□□□□□ -1.95
MSH3P20585 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.84□□□□□ -1.95
MSH3P20585 NACAP2-201ENST00000318548 624 ntBASIC2.84□□□□□ -1.95
MSH3P20585 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
MSH3P20585 RNU1-35P-201ENST00000362782 153 ntBASIC2.84□□□□□ -1.95
MSH3P20585 RNU4-20P-201ENST00000365601 151 ntBASIC2.84□□□□□ -1.95
MSH3P20585 RNU6-116P-201ENST00000384042 109 ntBASIC2.84□□□□□ -1.95
MSH3P20585 RNU6-38P-201ENST00000384085 107 ntBASIC2.84□□□□□ -1.95
MSH3P20585 UBA52P6-201ENST00000399822 382 ntBASIC2.84□□□□□ -1.95
MSH3P20585 Z92545.1-201ENST00000411782 234 ntBASIC2.84□□□□□ -1.95
MSH3P20585 AC096664.2-201ENST00000411843 406 ntBASIC2.84□□□□□ -1.95
MSH3P20585 AL160275.3-201ENST00000423876 471 ntBASIC2.84□□□□□ -1.95
MSH3P20585 AL592045.1-201ENST00000429867 352 ntBASIC2.84□□□□□ -1.95
MSH3P20585 TRAPPC2P3-201ENST00000443200 321 ntBASIC2.84□□□□□ -1.95
MSH3P20585 AC104058.1-201ENST00000448028 297 ntBASIC2.84□□□□□ -1.95
MSH3P20585 NIPA2P5-201ENST00000452282 464 ntBASIC2.84□□□□□ -1.95
MSH3P20585 FABP5P15-201ENST00000453566 214 ntBASIC2.84□□□□□ -1.95
MSH3P20585 RNU6-333P-201ENST00000459117 107 ntBASIC2.84□□□□□ -1.95
MSH3P20585 RPL23AP11-201ENST00000475260 469 ntBASIC2.84□□□□□ -1.95
MSH3P20585 RPS29P26-201ENST00000477483 171 ntBASIC2.84□□□□□ -1.95
MSH3P20585 AL135752.1-201ENST00000479477 471 ntBASIC2.84□□□□□ -1.95
MSH3P20585 RN7SL499P-201ENST00000481141 276 ntBASIC2.84□□□□□ -1.95
MSH3P20585 SUMO2P6-201ENST00000505273 288 ntBASIC2.84□□□□□ -1.95
MSH3P20585 MTCO3P9-201ENST00000506989 781 ntBASIC2.84□□□□□ -1.95
MSH3P20585 NAF1-205ENST00000509434 385 ntTSL 3 BASIC2.84□□□□□ -1.95
MSH3P20585 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC2.84□□□□□ -1.95
MSH3P20585 AC074344.1-201ENST00000512823 224 ntBASIC2.84□□□□□ -1.95
MSH3P20585 RNU6-1282P-201ENST00000516735 96 ntBASIC2.84□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 84.2 ms