Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 AC109329.1-201ENST00000518744 317 ntBASIC4.7□□□□□ -1.66
LIG1P18858 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC4.7□□□□□ -1.66
LIG1P18858 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC4.7□□□□□ -1.66
LIG1P18858 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC4.7□□□□□ -1.66
LIG1P18858 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC4.7□□□□□ -1.66
LIG1P18858 AL121917.1-203ENST00000605534 577 ntBASIC4.7□□□□□ -1.66
LIG1P18858 AC130454.1-201ENST00000622948 401 ntBASIC4.7□□□□□ -1.66
LIG1P18858 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.7□□□□□ -1.66
LIG1P18858 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC4.7□□□□□ -1.66
LIG1P18858 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC4.7□□□□□ -1.66
LIG1P18858 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
LIG1P18858 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
LIG1P18858 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
LIG1P18858 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
LIG1P18858 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC4.69□□□□□ -1.66
LIG1P18858 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
LIG1P18858 AP001148.1-201ENST00000624124 2359 ntBASIC4.69□□□□□ -1.66
LIG1P18858 MTND5P6-201ENST00000422338 1798 ntBASIC4.69□□□□□ -1.66
LIG1P18858 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
LIG1P18858 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
LIG1P18858 RNU6-1181P-201ENST00000384191 106 ntBASIC4.69□□□□□ -1.66
LIG1P18858 RNU6-1179P-201ENST00000384667 107 ntBASIC4.69□□□□□ -1.66
LIG1P18858 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.69□□□□□ -1.66
LIG1P18858 COX6B1P7-201ENST00000430845 235 ntBASIC4.69□□□□□ -1.66
LIG1P18858 VDAC1P3-201ENST00000434069 851 ntBASIC4.69□□□□□ -1.66
LIG1P18858 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC4.69□□□□□ -1.66
LIG1P18858 RPL26P6-201ENST00000440913 438 ntBASIC4.69□□□□□ -1.66
LIG1P18858 RNU7-169P-201ENST00000459456 61 ntBASIC4.69□□□□□ -1.66
LIG1P18858 AC022493.1-201ENST00000492984 337 ntBASIC4.69□□□□□ -1.66
LIG1P18858 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC4.69□□□□□ -1.66
LIG1P18858 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
LIG1P18858 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC4.69□□□□□ -1.66
LIG1P18858 AC004584.2-201ENST00000570407 410 ntBASIC4.69□□□□□ -1.66
LIG1P18858 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
LIG1P18858 MIR1273C-201ENST00000578669 77 ntBASIC4.69□□□□□ -1.66
LIG1P18858 MIR5701-3-201ENST00000578890 82 ntBASIC4.69□□□□□ -1.66
LIG1P18858 MIR5701-1-201ENST00000585138 82 ntBASIC4.69□□□□□ -1.66
LIG1P18858 AL512605.2-201ENST00000592972 256 ntBASIC4.69□□□□□ -1.66
LIG1P18858 AL390123.1-201ENST00000603216 237 ntBASIC4.69□□□□□ -1.66
LIG1P18858 MIR3976-201ENST00000606807 139 ntBASIC4.69□□□□□ -1.66
LIG1P18858 MIR5701-2-201ENST00000615634 82 ntBASIC4.69□□□□□ -1.66
LIG1P18858 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.69□□□□□ -1.66
LIG1P18858 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
LIG1P18858 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.69□□□□□ -1.66
LIG1P18858 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
LIG1P18858 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
LIG1P18858 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
LIG1P18858 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
LIG1P18858 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
LIG1P18858 AC009812.4-201ENST00000569134 1805 ntBASIC4.68□□□□□ -1.66
LIG1P18858 UBE2L2-201ENST00000254302 429 ntBASIC4.68□□□□□ -1.66
LIG1P18858 RNU6-611P-201ENST00000384276 104 ntBASIC4.68□□□□□ -1.66
LIG1P18858 Y_RNA.477-201ENST00000384352 108 ntBASIC4.68□□□□□ -1.66
LIG1P18858 U3.42-201ENST00000408746 214 ntBASIC4.68□□□□□ -1.66
LIG1P18858 RNU2-71P-201ENST00000411395 189 ntBASIC4.68□□□□□ -1.66
LIG1P18858 AL513331.1-201ENST00000411908 397 ntBASIC4.68□□□□□ -1.66
LIG1P18858 AL096701.2-201ENST00000416920 238 ntBASIC4.68□□□□□ -1.66
LIG1P18858 HSPD1P21-201ENST00000436541 245 ntBASIC4.68□□□□□ -1.66
LIG1P18858 AC133134.1-201ENST00000466800 359 ntBASIC4.68□□□□□ -1.66
LIG1P18858 UBE2Q2P9-201ENST00000490086 202 ntBASIC4.68□□□□□ -1.66
LIG1P18858 HMGB3P17-201ENST00000504195 649 ntBASIC4.68□□□□□ -1.66
LIG1P18858 HMGN1P11-201ENST00000508668 303 ntBASIC4.68□□□□□ -1.66
LIG1P18858 RNU1-86P-201ENST00000516108 154 ntBASIC4.68□□□□□ -1.66
LIG1P18858 MIR892C-201ENST00000516410 77 ntBASIC4.68□□□□□ -1.66
LIG1P18858 RNU1-107P-201ENST00000516617 154 ntBASIC4.68□□□□□ -1.66
LIG1P18858 RNU7-143P-201ENST00000516781 65 ntBASIC4.68□□□□□ -1.66
LIG1P18858 SMILR-201ENST00000533992 553 ntTSL 4 BASIC4.68□□□□□ -1.66
LIG1P18858 AL360157.1-201ENST00000565962 87 ntBASIC4.68□□□□□ -1.66
LIG1P18858 AC022655.2-201ENST00000577280 318 ntBASIC4.68□□□□□ -1.66
LIG1P18858 MIR3690-201ENST00000580266 75 ntBASIC4.68□□□□□ -1.66
LIG1P18858 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC4.68□□□□□ -1.66
LIG1P18858 RPS29P30-201ENST00000600975 111 ntBASIC4.68□□□□□ -1.66
LIG1P18858 AL158827.2-201ENST00000602494 330 ntBASIC4.68□□□□□ -1.66
LIG1P18858 AC008962.1-201ENST00000605729 304 ntBASIC4.68□□□□□ -1.66
LIG1P18858 SDR42E1P4-201ENST00000620894 481 ntBASIC4.68□□□□□ -1.66
LIG1P18858 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC4.68□□□□□ -1.66
LIG1P18858 AL691447.3-201ENST00000635020 330 ntBASIC4.68□□□□□ -1.66
LIG1P18858 Z99571.1-201ENST00000636677 394 ntBASIC4.68□□□□□ -1.66
LIG1P18858 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC4.68□□□□□ -1.66
LIG1P18858 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.68□□□□□ -1.66
LIG1P18858 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC4.68□□□□□ -1.66
LIG1P18858 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC4.68□□□□□ -1.66
LIG1P18858 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC4.68□□□□□ -1.66
LIG1P18858 ZNF299P-201ENST00000406845 1804 ntBASIC4.67□□□□□ -1.66
LIG1P18858 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
LIG1P18858 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.67□□□□□ -1.66
LIG1P18858 RNU6-200P-201ENST00000364743 107 ntBASIC4.67□□□□□ -1.66
LIG1P18858 Y_RNA.533-201ENST00000384596 114 ntBASIC4.67□□□□□ -1.66
LIG1P18858 MIR301A-201ENST00000385261 86 ntBASIC4.67□□□□□ -1.66
LIG1P18858 AL590135.1-201ENST00000422215 156 ntBASIC4.67□□□□□ -1.66
LIG1P18858 AC017083.1-201ENST00000428093 483 ntBASIC4.67□□□□□ -1.66
LIG1P18858 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC4.67□□□□□ -1.66
LIG1P18858 AL592045.1-201ENST00000429867 352 ntBASIC4.67□□□□□ -1.66
LIG1P18858 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC4.67□□□□□ -1.66
LIG1P18858 LINC01399-202ENST00000458450 244 ntBASIC4.67□□□□□ -1.66
LIG1P18858 HMGN2P13-201ENST00000476476 274 ntBASIC4.67□□□□□ -1.66
LIG1P18858 Y_RNA.673-201ENST00000516306 88 ntBASIC4.67□□□□□ -1.66
LIG1P18858 RNU6-1315P-201ENST00000517187 99 ntBASIC4.67□□□□□ -1.66
LIG1P18858 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC4.67□□□□□ -1.66
LIG1P18858 AP003733.2-201ENST00000529409 171 ntBASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms