Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AC008850.1-201ENST00000427546 362 ntBASIC2.28□□□□□ -2.04
HOXC4P09017 RPL31P35-201ENST00000431058 377 ntBASIC2.28□□□□□ -2.04
HOXC4P09017 AL139415.2-201ENST00000431968 163 ntBASIC2.28□□□□□ -2.04
HOXC4P09017 AL596276.1-201ENST00000434465 418 ntBASIC2.28□□□□□ -2.04
HOXC4P09017 AC018634.1-201ENST00000437554 401 ntBASIC2.28□□□□□ -2.04
HOXC4P09017 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.28□□□□□ -2.04
HOXC4P09017 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC2.28□□□□□ -2.04
HOXC4P09017 SNORD121B-201ENST00000458838 81 ntBASIC2.28□□□□□ -2.04
HOXC4P09017 AL121769.1-201ENST00000469473 401 ntBASIC2.28□□□□□ -2.04
HOXC4P09017 RBM43P1-201ENST00000476891 1081 ntBASIC2.28□□□□□ -2.04
HOXC4P09017 AC055855.1-201ENST00000489563 579 ntBASIC2.28□□□□□ -2.04
HOXC4P09017 RPL23AP49-201ENST00000492925 468 ntBASIC2.28□□□□□ -2.04
HOXC4P09017 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC2.28□□□□□ -2.04
HOXC4P09017 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC2.28□□□□□ -2.04
HOXC4P09017 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
HOXC4P09017 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC2.28□□□□□ -2.04
HOXC4P09017 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC2.28□□□□□ -2.04
HOXC4P09017 DEFB108A-201ENST00000530110 222 ntBASIC2.28□□□□□ -2.04
HOXC4P09017 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC2.28□□□□□ -2.04
HOXC4P09017 AC121758.2-201ENST00000553271 193 ntBASIC2.28□□□□□ -2.04
HOXC4P09017 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC2.28□□□□□ -2.04
HOXC4P09017 AL356432.3-201ENST00000568952 465 ntBASIC2.28□□□□□ -2.04
HOXC4P09017 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC2.28□□□□□ -2.04
HOXC4P09017 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.28□□□□□ -2.04
HOXC4P09017 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.28□□□□□ -2.04
HOXC4P09017 RNU6-87P-201ENST00000607561 108 ntBASIC2.28□□□□□ -2.04
HOXC4P09017 AL137847.3-201ENST00000611521 109 ntBASIC2.28□□□□□ -2.04
HOXC4P09017 AC090517.2-201ENST00000614966 680 ntBASIC2.28□□□□□ -2.04
HOXC4P09017 U6atac.1-201ENST00000616025 117 ntBASIC2.28□□□□□ -2.04
HOXC4P09017 AC112204.3-201ENST00000623822 332 ntBASIC2.28□□□□□ -2.04
HOXC4P09017 AC124864.2-201ENST00000624736 186 ntBASIC2.28□□□□□ -2.04
HOXC4P09017 VPS8-228ENST00000628962 207 ntTSL 5 BASIC2.28□□□□□ -2.04
HOXC4P09017 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.28□□□□□ -2.04
HOXC4P09017 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.28□□□□□ -2.05
HOXC4P09017 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
HOXC4P09017 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.27□□□□□ -2.05
HOXC4P09017 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC2.27□□□□□ -2.05
HOXC4P09017 RNU6-97P-201ENST00000363387 104 ntBASIC2.27□□□□□ -2.05
HOXC4P09017 Y_RNA.409-201ENST00000383990 98 ntBASIC2.27□□□□□ -2.05
HOXC4P09017 RNU6-114P-201ENST00000384704 105 ntBASIC2.27□□□□□ -2.05
HOXC4P09017 GSTA9P-201ENST00000406231 611 ntBASIC2.27□□□□□ -2.05
HOXC4P09017 BTF3P7-201ENST00000407097 488 ntBASIC2.27□□□□□ -2.05
HOXC4P09017 RN7SKP223-201ENST00000410582 62 ntBASIC2.27□□□□□ -2.05
HOXC4P09017 RN7SKP284-201ENST00000411002 343 ntBASIC2.27□□□□□ -2.05
HOXC4P09017 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC2.27□□□□□ -2.05
HOXC4P09017 DPH3P2-201ENST00000422618 250 ntBASIC2.27□□□□□ -2.05
HOXC4P09017 MTCYBP5-201ENST00000423752 1135 ntBASIC2.27□□□□□ -2.05
HOXC4P09017 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC2.27□□□□□ -2.05
HOXC4P09017 AL358075.3-201ENST00000426289 226 ntBASIC2.27□□□□□ -2.05
HOXC4P09017 AC009414.1-201ENST00000427200 443 ntBASIC2.27□□□□□ -2.05
HOXC4P09017 MRPS10P2-201ENST00000431226 381 ntBASIC2.27□□□□□ -2.05
HOXC4P09017 UBE2V1P8-201ENST00000437166 265 ntBASIC2.27□□□□□ -2.05
HOXC4P09017 Z82210.1-201ENST00000440037 231 ntBASIC2.27□□□□□ -2.05
HOXC4P09017 MTCO2P3-201ENST00000442543 421 ntBASIC2.27□□□□□ -2.05
HOXC4P09017 AC003071.1-201ENST00000451219 789 ntBASIC2.27□□□□□ -2.05
HOXC4P09017 MTND1P9-201ENST00000453775 944 ntBASIC2.27□□□□□ -2.05
HOXC4P09017 C1DP4-201ENST00000455429 424 ntBASIC2.27□□□□□ -2.05
HOXC4P09017 AP1S2P1-201ENST00000457344 379 ntBASIC2.27□□□□□ -2.05
HOXC4P09017 AC021382.1-201ENST00000483523 359 ntBASIC2.27□□□□□ -2.05
HOXC4P09017 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC2.27□□□□□ -2.05
HOXC4P09017 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC2.27□□□□□ -2.05
HOXC4P09017 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC2.27□□□□□ -2.05
HOXC4P09017 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC2.27□□□□□ -2.05
HOXC4P09017 RN7SKP40-201ENST00000517211 242 ntBASIC2.27□□□□□ -2.05
HOXC4P09017 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.27□□□□□ -2.05
HOXC4P09017 SUB1P1-201ENST00000524415 382 ntBASIC2.27□□□□□ -2.05
HOXC4P09017 FAM92A1P1-201ENST00000528023 890 ntBASIC2.27□□□□□ -2.05
HOXC4P09017 OR4R1P-201ENST00000529879 463 ntBASIC2.27□□□□□ -2.05
HOXC4P09017 AP000907.2-201ENST00000530827 353 ntBASIC2.27□□□□□ -2.05
HOXC4P09017 AL391840.1-201ENST00000571144 367 ntBASIC2.27□□□□□ -2.05
HOXC4P09017 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC2.27□□□□□ -2.05
HOXC4P09017 AC005498.1-201ENST00000592125 465 ntBASIC2.27□□□□□ -2.05
HOXC4P09017 AL359999.1-201ENST00000604513 294 ntBASIC2.27□□□□□ -2.05
HOXC4P09017 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.27□□□□□ -2.05
HOXC4P09017 AC072046.2-201ENST00000618366 268 ntBASIC2.27□□□□□ -2.05
HOXC4P09017 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.27□□□□□ -2.05
HOXC4P09017 MIR6863-201ENST00000636112 90 ntBASIC2.27□□□□□ -2.05
HOXC4P09017 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.27□□□□□ -2.05
HOXC4P09017 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
HOXC4P09017 CR848007.1-201ENST00000442354 1699 ntBASIC2.27□□□□□ -2.05
HOXC4P09017 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.27□□□□□ -2.05
HOXC4P09017 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.27□□□□□ -2.05
HOXC4P09017 Z82209.1-201ENST00000422141 2135 ntBASIC2.26□□□□□ -2.05
HOXC4P09017 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2.26□□□□□ -2.05
HOXC4P09017 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.26□□□□□ -2.05
HOXC4P09017 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
HOXC4P09017 RNU5E-8P-201ENST00000363502 116 ntBASIC2.26□□□□□ -2.05
HOXC4P09017 Y_RNA.248-201ENST00000364501 109 ntBASIC2.26□□□□□ -2.05
HOXC4P09017 Y_RNA.296-201ENST00000364930 108 ntBASIC2.26□□□□□ -2.05
HOXC4P09017 U8.8-201ENST00000365399 135 ntBASIC2.26□□□□□ -2.05
HOXC4P09017 SNORD115-47-201ENST00000391226 86 ntBASIC2.26□□□□□ -2.05
HOXC4P09017 AC127391.1-201ENST00000411737 98 ntBASIC2.26□□□□□ -2.05
HOXC4P09017 MTND3P17-201ENST00000416968 344 ntBASIC2.26□□□□□ -2.05
HOXC4P09017 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.26□□□□□ -2.05
HOXC4P09017 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC2.26□□□□□ -2.05
HOXC4P09017 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC2.26□□□□□ -2.05
HOXC4P09017 AC098614.2-201ENST00000426040 255 ntBASIC2.26□□□□□ -2.05
HOXC4P09017 TRIM60P8Y-201ENST00000436338 762 ntBASIC2.26□□□□□ -2.05
HOXC4P09017 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC2.26□□□□□ -2.05
HOXC4P09017 BNIP3P2-201ENST00000441221 577 ntBASIC2.26□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 95.2 ms