Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC3.37□□□□□ -1.87
NPHP1O15259 AC012213.3-201ENST00000577199 777 ntBASIC3.37□□□□□ -1.87
NPHP1O15259 MIR4528-201ENST00000577763 90 ntBASIC3.37□□□□□ -1.87
NPHP1O15259 AC098614.4-201ENST00000607601 462 ntBASIC3.37□□□□□ -1.87
NPHP1O15259 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
NPHP1O15259 ASNSP3-201ENST00000451989 1306 ntBASIC3.37□□□□□ -1.87
NPHP1O15259 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.37□□□□□ -1.87
NPHP1O15259 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
NPHP1O15259 CKAP2P1-201ENST00000555477 2049 ntBASIC3.36□□□□□ -1.87
NPHP1O15259 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.36□□□□□ -1.87
NPHP1O15259 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC3.36□□□□□ -1.87
NPHP1O15259 RNU6-1097P-201ENST00000363586 107 ntBASIC3.36□□□□□ -1.87
NPHP1O15259 RNU6-282P-201ENST00000365357 103 ntBASIC3.36□□□□□ -1.87
NPHP1O15259 RNU6-898P-201ENST00000365627 104 ntBASIC3.36□□□□□ -1.87
NPHP1O15259 RNU6-1083P-201ENST00000384022 107 ntBASIC3.36□□□□□ -1.87
NPHP1O15259 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
NPHP1O15259 RNA5SP492-201ENST00000411330 114 ntBASIC3.36□□□□□ -1.87
NPHP1O15259 RNU6-387P-201ENST00000411331 105 ntBASIC3.36□□□□□ -1.87
NPHP1O15259 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC3.36□□□□□ -1.87
NPHP1O15259 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC3.36□□□□□ -1.87
NPHP1O15259 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC3.36□□□□□ -1.87
NPHP1O15259 PTGES3P4-201ENST00000426243 356 ntBASIC3.36□□□□□ -1.87
NPHP1O15259 AC133104.1-201ENST00000429100 218 ntBASIC3.36□□□□□ -1.87
NPHP1O15259 AC092427.1-202ENST00000430569 476 ntBASIC3.36□□□□□ -1.87
NPHP1O15259 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC3.36□□□□□ -1.87
NPHP1O15259 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC3.36□□□□□ -1.87
NPHP1O15259 MTCO1P19-201ENST00000443487 500 ntBASIC3.36□□□□□ -1.87
NPHP1O15259 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC3.36□□□□□ -1.87
NPHP1O15259 KLF3P2-201ENST00000465138 268 ntBASIC3.36□□□□□ -1.87
NPHP1O15259 UBL5P3-201ENST00000475112 231 ntBASIC3.36□□□□□ -1.87
NPHP1O15259 GZMAP1-201ENST00000503054 631 ntBASIC3.36□□□□□ -1.87
NPHP1O15259 AC010424.1-201ENST00000506336 297 ntBASIC3.36□□□□□ -1.87
NPHP1O15259 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
NPHP1O15259 RN7SKP43-201ENST00000516173 320 ntBASIC3.36□□□□□ -1.87
NPHP1O15259 RNU6-685P-201ENST00000517088 95 ntBASIC3.36□□□□□ -1.87
NPHP1O15259 HSPE1P20-201ENST00000538133 289 ntBASIC3.36□□□□□ -1.87
NPHP1O15259 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC3.36□□□□□ -1.87
NPHP1O15259 DEFB131E-202ENST00000602581 683 ntBASIC3.36□□□□□ -1.87
NPHP1O15259 AL645944.1-201ENST00000603857 493 ntBASIC3.36□□□□□ -1.87
NPHP1O15259 AC006566.1-201ENST00000608943 513 ntBASIC3.36□□□□□ -1.87
NPHP1O15259 AC010678.1-201ENST00000614118 713 ntBASIC3.36□□□□□ -1.87
NPHP1O15259 AC072046.2-201ENST00000618366 268 ntBASIC3.36□□□□□ -1.87
NPHP1O15259 AC099842.1-201ENST00000619919 596 ntBASIC3.36□□□□□ -1.87
NPHP1O15259 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC3.36□□□□□ -1.87
NPHP1O15259 MTND5P17-201ENST00000418405 1603 ntBASIC3.36□□□□□ -1.87
NPHP1O15259 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
NPHP1O15259 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
NPHP1O15259 AC010329.5-201ENST00000623497 2174 ntBASIC3.35□□□□□ -1.87
NPHP1O15259 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC3.35□□□□□ -1.87
NPHP1O15259 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
NPHP1O15259 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
NPHP1O15259 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC3.35□□□□□ -1.87
NPHP1O15259 MTCYBP5-201ENST00000423752 1135 ntBASIC3.35□□□□□ -1.87
NPHP1O15259 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.35□□□□□ -1.87
NPHP1O15259 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC3.35□□□□□ -1.87
NPHP1O15259 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC3.35□□□□□ -1.87
NPHP1O15259 FDX1P2-201ENST00000450769 375 ntBASIC3.35□□□□□ -1.87
NPHP1O15259 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC3.35□□□□□ -1.87
NPHP1O15259 AC023194.1-201ENST00000493084 308 ntBASIC3.35□□□□□ -1.87
NPHP1O15259 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC3.35□□□□□ -1.87
NPHP1O15259 AC112206.3-201ENST00000514578 389 ntBASIC3.35□□□□□ -1.87
NPHP1O15259 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC3.35□□□□□ -1.87
NPHP1O15259 RNU6-430P-201ENST00000517078 107 ntBASIC3.35□□□□□ -1.87
NPHP1O15259 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC3.35□□□□□ -1.87
NPHP1O15259 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC3.35□□□□□ -1.87
NPHP1O15259 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC3.35□□□□□ -1.87
NPHP1O15259 AP005136.1-201ENST00000579765 429 ntBASIC3.35□□□□□ -1.87
NPHP1O15259 AC007621.1-201ENST00000604544 437 ntBASIC3.35□□□□□ -1.87
NPHP1O15259 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
NPHP1O15259 MIR6733-201ENST00000635723 61 ntBASIC3.35□□□□□ -1.87
NPHP1O15259 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
NPHP1O15259 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
NPHP1O15259 SNORD3E-201ENST00000362899 217 ntBASIC3.34□□□□□ -1.87
NPHP1O15259 SNORD115-7-201ENST00000365306 82 ntBASIC3.34□□□□□ -1.87
NPHP1O15259 SNORD116-2-201ENST00000384274 95 ntBASIC3.34□□□□□ -1.87
NPHP1O15259 SNORD116-1-201ENST00000384335 95 ntBASIC3.34□□□□□ -1.87
NPHP1O15259 SNORD116-6-201ENST00000384711 96 ntBASIC3.34□□□□□ -1.87
NPHP1O15259 RNU6-19P-201ENST00000384718 107 ntBASIC3.34□□□□□ -1.87
NPHP1O15259 Y_RNA.576-201ENST00000384781 102 ntBASIC3.34□□□□□ -1.87
NPHP1O15259 MIR1-2-201ENST00000384961 85 ntBASIC3.34□□□□□ -1.87
NPHP1O15259 RNA5SP344-201ENST00000411081 104 ntBASIC3.34□□□□□ -1.87
NPHP1O15259 RPL19P1-201ENST00000411635 428 ntBASIC3.34□□□□□ -1.87
NPHP1O15259 EEF1A1P40-201ENST00000412883 573 ntBASIC3.34□□□□□ -1.87
NPHP1O15259 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC3.34□□□□□ -1.87
NPHP1O15259 AL360221.1-201ENST00000445989 335 ntBASIC3.34□□□□□ -1.87
NPHP1O15259 BTF3P15-201ENST00000455606 336 ntBASIC3.34□□□□□ -1.87
NPHP1O15259 AL583843.1-201ENST00000456070 346 ntBASIC3.34□□□□□ -1.87
NPHP1O15259 AL121769.1-201ENST00000469473 401 ntBASIC3.34□□□□□ -1.87
NPHP1O15259 EIF4EP3-201ENST00000498782 656 ntBASIC3.34□□□□□ -1.87
NPHP1O15259 AC116655.1-201ENST00000508324 901 ntBASIC3.34□□□□□ -1.87
NPHP1O15259 SNORD27.1-201ENST00000516319 72 ntBASIC3.34□□□□□ -1.87
NPHP1O15259 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC3.34□□□□□ -1.87
NPHP1O15259 BTF3P12-201ENST00000519620 469 ntBASIC3.34□□□□□ -1.87
NPHP1O15259 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC3.34□□□□□ -1.87
NPHP1O15259 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC3.34□□□□□ -1.87
NPHP1O15259 AC027176.1-201ENST00000560204 514 ntBASIC3.34□□□□□ -1.87
NPHP1O15259 MIR548AC-201ENST00000585049 88 ntBASIC3.34□□□□□ -1.87
NPHP1O15259 RSL24D1P11-201ENST00000591045 491 ntBASIC3.34□□□□□ -1.87
NPHP1O15259 DLEU2_1.1-201ENST00000612089 120 ntBASIC3.34□□□□□ -1.87
NPHP1O15259 DLEU2_1.2-201ENST00000614667 120 ntBASIC3.34□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 137.6 ms