Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 AC012435.1-202ENST00000568772 240 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 AL391840.1-201ENST00000571144 367 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC1.71□□□□□ -2.14
SHANK1Q9Y566 AP000811.1-201ENST00000603803 651 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 AC009314.1-201ENST00000603871 304 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 AC106900.2-201ENST00000604994 317 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 AC090617.7-201ENST00000623952 126 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 AL603839.4-201ENST00000624658 1005 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 AC008669.1-201ENST00000565823 2178 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC1.71□□□□□ -2.14
SHANK1Q9Y566 AC092125.1-201ENST00000562568 1995 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 MIR613-201ENST00000385248 95 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 RNU1-101P-201ENST00000391171 127 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 RPL21P75-201ENST00000396599 483 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 RPL21P1-201ENST00000399532 476 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 RPL21P28-201ENST00000401418 483 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 AL592114.1-201ENST00000403842 483 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 USP9YP13-201ENST00000417797 480 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC1.71□□□□□ -2.14
SHANK1Q9Y566 SLC44A3-AS1-205ENST00000424505 612 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC1.71□□□□□ -2.14
SHANK1Q9Y566 TRIM60P10Y-201ENST00000425589 751 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 AC137499.1-201ENST00000427602 88 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 TRIM60P8Y-201ENST00000436338 762 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC1.71□□□□□ -2.14
SHANK1Q9Y566 AC092798.1-201ENST00000458542 409 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 RPL21P16-201ENST00000495531 483 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 AC010486.3-201ENST00000511602 785 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC1.71□□□□□ -2.14
SHANK1Q9Y566 SNORA18.6-201ENST00000516792 115 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 RNU6-1003P-201ENST00000517099 105 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 MTND4LP18-201ENST00000526864 291 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 ARL2BPP2-201ENST00000550907 489 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 RPS3AP4-201ENST00000555161 764 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC1.71□□□□□ -2.14
SHANK1Q9Y566 RPS3AP23-202ENST00000574601 686 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 FAM60BP-201ENST00000578364 658 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 MIR4474-201ENST00000579189 78 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC1.71□□□□□ -2.14
SHANK1Q9Y566 MIR3682-201ENST00000581338 84 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 SNORA4-201ENST00000584302 138 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC1.71□□□□□ -2.14
SHANK1Q9Y566 MTCYBP22-201ENST00000603788 447 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 AC121334.2-201ENST00000605387 271 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 AC108747.1-201ENST00000609508 535 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 AC006338.1-201ENST00000618453 749 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 AC095031.1-201ENST00000623685 672 ntBASIC1.71□□□□□ -2.14
SHANK1Q9Y566 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC1.7□□□□□ -2.14
SHANK1Q9Y566 RNU5A-1-201ENST00000362698 116 ntBASIC1.7□□□□□ -2.14
SHANK1Q9Y566 SNORD114-26-201ENST00000363543 72 ntBASIC1.7□□□□□ -2.14
SHANK1Q9Y566 RPS3AP36-201ENST00000398190 775 ntBASIC1.7□□□□□ -2.14
SHANK1Q9Y566 FGF7P8-201ENST00000402994 292 ntBASIC1.7□□□□□ -2.14
SHANK1Q9Y566 AC019129.1-201ENST00000403786 261 ntBASIC1.7□□□□□ -2.14
SHANK1Q9Y566 MIR1290-201ENST00000408735 78 ntBASIC1.7□□□□□ -2.14
SHANK1Q9Y566 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC1.7□□□□□ -2.14
SHANK1Q9Y566 AL356583.2-201ENST00000426536 280 ntBASIC1.7□□□□□ -2.14
SHANK1Q9Y566 CALM2P2-201ENST00000428512 440 ntBASIC1.7□□□□□ -2.14
SHANK1Q9Y566 RABEPKP1-201ENST00000440529 1026 ntBASIC1.7□□□□□ -2.14
SHANK1Q9Y566 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC1.7□□□□□ -2.14
SHANK1Q9Y566 AC108059.3-201ENST00000456388 214 ntBASIC1.7□□□□□ -2.14
SHANK1Q9Y566 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC1.7□□□□□ -2.14
SHANK1Q9Y566 MTAPP1-201ENST00000489154 819 ntBASIC1.7□□□□□ -2.14
SHANK1Q9Y566 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC1.7□□□□□ -2.14
SHANK1Q9Y566 AC092436.3-201ENST00000511788 257 ntBASIC1.7□□□□□ -2.14
SHANK1Q9Y566 AC105417.1-201ENST00000514691 285 ntBASIC1.7□□□□□ -2.14
SHANK1Q9Y566 Y_RNA.695-201ENST00000516715 107 ntBASIC1.7□□□□□ -2.14
SHANK1Q9Y566 RNU6-840P-201ENST00000517275 65 ntBASIC1.7□□□□□ -2.14
SHANK1Q9Y566 AP002748.2-201ENST00000528671 348 ntBASIC1.7□□□□□ -2.14
SHANK1Q9Y566 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC1.7□□□□□ -2.14
SHANK1Q9Y566 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC1.7□□□□□ -2.14
SHANK1Q9Y566 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC1.7□□□□□ -2.14
SHANK1Q9Y566 AC005951.2-201ENST00000576282 495 ntBASIC1.7□□□□□ -2.14
SHANK1Q9Y566 MIR3683-201ENST00000580847 82 ntBASIC1.7□□□□□ -2.14
SHANK1Q9Y566 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC1.7□□□□□ -2.14
SHANK1Q9Y566 MIR4293-201ENST00000584305 78 ntBASIC1.7□□□□□ -2.14
SHANK1Q9Y566 AC090132.2-201ENST00000615881 347 ntBASIC1.7□□□□□ -2.14
SHANK1Q9Y566 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC1.7□□□□□ -2.14
SHANK1Q9Y566 AC103710.2-202ENST00000641454 2853 ntBASIC1.7□□□□□ -2.14
SHANK1Q9Y566 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
SHANK1Q9Y566 U3.4-201ENST00000363352 213 ntBASIC1.69□□□□□ -2.14
SHANK1Q9Y566 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC1.69□□□□□ -2.14
SHANK1Q9Y566 MTCO2P34-201ENST00000421994 607 ntBASIC1.69□□□□□ -2.14
SHANK1Q9Y566 MTCO3P30-201ENST00000426425 670 ntBASIC1.69□□□□□ -2.14
SHANK1Q9Y566 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC1.69□□□□□ -2.14
SHANK1Q9Y566 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC1.69□□□□□ -2.14
SHANK1Q9Y566 ARPC3P1-201ENST00000437218 533 ntBASIC1.69□□□□□ -2.14
SHANK1Q9Y566 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC1.69□□□□□ -2.14
SHANK1Q9Y566 AL590365.1-201ENST00000450788 243 ntBASIC1.69□□□□□ -2.14
SHANK1Q9Y566 MIR449C-201ENST00000516047 92 ntBASIC1.69□□□□□ -2.14
SHANK1Q9Y566 AC106038.2-201ENST00000520706 568 ntBASIC1.69□□□□□ -2.14
SHANK1Q9Y566 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.69□□□□□ -2.14
SHANK1Q9Y566 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC1.69□□□□□ -2.14
SHANK1Q9Y566 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
SHANK1Q9Y566 NDUFAF4P1-201ENST00000559425 519 ntBASIC1.69□□□□□ -2.14
SHANK1Q9Y566 ACTR3BP3-201ENST00000565577 979 ntBASIC1.69□□□□□ -2.14
SHANK1Q9Y566 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
SHANK1Q9Y566 AC002984.1-201ENST00000591692 448 ntBASIC1.69□□□□□ -2.14
SHANK1Q9Y566 APOOP1-201ENST00000604695 592 ntBASIC1.69□□□□□ -2.14
SHANK1Q9Y566 AC092354.1-201ENST00000606057 376 ntBASIC1.69□□□□□ -2.14
SHANK1Q9Y566 AC090970.3-201ENST00000612566 866 ntBASIC1.69□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms