Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 AP000852.1-201ENST00000472460 573 ntBASIC4.91□□□□□ -1.62
CCDC9Q9Y3X0 RPS27P26-201ENST00000494583 239 ntBASIC4.91□□□□□ -1.62
CCDC9Q9Y3X0 MTND4LP22-201ENST00000508209 276 ntBASIC4.91□□□□□ -1.62
CCDC9Q9Y3X0 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC4.91□□□□□ -1.62
CCDC9Q9Y3X0 PPBPP1-201ENST00000510807 373 ntBASIC4.91□□□□□ -1.62
CCDC9Q9Y3X0 RNU6-581P-201ENST00000516214 105 ntBASIC4.91□□□□□ -1.62
CCDC9Q9Y3X0 AC118273.2-201ENST00000532092 465 ntBASIC4.91□□□□□ -1.62
CCDC9Q9Y3X0 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC4.91□□□□□ -1.62
CCDC9Q9Y3X0 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC4.91□□□□□ -1.62
CCDC9Q9Y3X0 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC4.91□□□□□ -1.62
CCDC9Q9Y3X0 CYP4A43P-201ENST00000568156 121 ntBASIC4.91□□□□□ -1.62
CCDC9Q9Y3X0 MIR4325-201ENST00000583049 90 ntBASIC4.91□□□□□ -1.62
CCDC9Q9Y3X0 AC011712.1-201ENST00000588959 234 ntBASIC4.91□□□□□ -1.62
CCDC9Q9Y3X0 AC008121.1-201ENST00000603244 268 ntBASIC4.91□□□□□ -1.62
CCDC9Q9Y3X0 USP12-203ENST00000620323 349 ntTSL 3 BASIC4.91□□□□□ -1.62
CCDC9Q9Y3X0 AC110079.1-202ENST00000635213 138 ntBASIC4.91□□□□□ -1.62
CCDC9Q9Y3X0 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC4.91□□□□□ -1.62
CCDC9Q9Y3X0 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC4.9□□□□□ -1.62
CCDC9Q9Y3X0 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC4.9□□□□□ -1.62
CCDC9Q9Y3X0 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.62
CCDC9Q9Y3X0 RNA5SP374-201ENST00000362939 125 ntBASIC4.9□□□□□ -1.63
CCDC9Q9Y3X0 AC096649.2-201ENST00000416186 393 ntBASIC4.9□□□□□ -1.63
CCDC9Q9Y3X0 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC4.9□□□□□ -1.63
CCDC9Q9Y3X0 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC4.9□□□□□ -1.63
CCDC9Q9Y3X0 NDUFA5P4-201ENST00000436704 385 ntBASIC4.9□□□□□ -1.63
CCDC9Q9Y3X0 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC4.9□□□□□ -1.63
CCDC9Q9Y3X0 AC087884.1-201ENST00000469738 328 ntBASIC4.9□□□□□ -1.63
CCDC9Q9Y3X0 AC117503.1-201ENST00000472241 394 ntBASIC4.9□□□□□ -1.63
CCDC9Q9Y3X0 AC093663.1-201ENST00000497190 394 ntBASIC4.9□□□□□ -1.63
CCDC9Q9Y3X0 FAM206BP-201ENST00000510179 541 ntBASIC4.9□□□□□ -1.63
CCDC9Q9Y3X0 AC114781.4-201ENST00000513707 639 ntBASIC4.9□□□□□ -1.63
CCDC9Q9Y3X0 BTF3P12-201ENST00000519620 469 ntBASIC4.9□□□□□ -1.63
CCDC9Q9Y3X0 RNU6-323P-201ENST00000521915 107 ntBASIC4.9□□□□□ -1.63
CCDC9Q9Y3X0 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC4.9□□□□□ -1.63
CCDC9Q9Y3X0 PSMA3P-201ENST00000555485 635 ntBASIC4.9□□□□□ -1.63
CCDC9Q9Y3X0 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC4.9□□□□□ -1.63
CCDC9Q9Y3X0 AL136221.1-201ENST00000621449 509 ntBASIC4.9□□□□□ -1.63
CCDC9Q9Y3X0 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC4.9□□□□□ -1.63
CCDC9Q9Y3X0 DUXAP9-208ENST00000622815 614 ntBASIC4.9□□□□□ -1.63
CCDC9Q9Y3X0 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
CCDC9Q9Y3X0 AC007496.3-201ENST00000624987 3443 ntBASIC4.9□□□□□ -1.63
CCDC9Q9Y3X0 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC4.89□□□□□ -1.63
CCDC9Q9Y3X0 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC9Q9Y3X0 RNA5SP104-201ENST00000410989 118 ntBASIC4.89□□□□□ -1.63
CCDC9Q9Y3X0 RN7SKP284-201ENST00000411002 343 ntBASIC4.89□□□□□ -1.63
CCDC9Q9Y3X0 RPS15AP6-201ENST00000420703 385 ntBASIC4.89□□□□□ -1.63
CCDC9Q9Y3X0 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC4.89□□□□□ -1.63
CCDC9Q9Y3X0 MTND4LP11-201ENST00000422184 280 ntBASIC4.89□□□□□ -1.63
CCDC9Q9Y3X0 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC4.89□□□□□ -1.63
CCDC9Q9Y3X0 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC4.89□□□□□ -1.63
CCDC9Q9Y3X0 MTND3P10-201ENST00000450967 341 ntBASIC4.89□□□□□ -1.63
CCDC9Q9Y3X0 RNU7-138P-201ENST00000459479 64 ntBASIC4.89□□□□□ -1.63
CCDC9Q9Y3X0 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC4.89□□□□□ -1.63
CCDC9Q9Y3X0 TRBVA-201ENST00000498804 316 ntBASIC4.89□□□□□ -1.63
CCDC9Q9Y3X0 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC9Q9Y3X0 AC025554.1-201ENST00000505641 188 ntBASIC4.89□□□□□ -1.63
CCDC9Q9Y3X0 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC4.89□□□□□ -1.63
CCDC9Q9Y3X0 RAC1P2-201ENST00000511164 579 ntBASIC4.89□□□□□ -1.63
CCDC9Q9Y3X0 AC010486.1-201ENST00000511793 424 ntBASIC4.89□□□□□ -1.63
CCDC9Q9Y3X0 RAC1P5-201ENST00000512182 576 ntBASIC4.89□□□□□ -1.63
CCDC9Q9Y3X0 RNU6-1069P-201ENST00000516612 133 ntBASIC4.89□□□□□ -1.63
CCDC9Q9Y3X0 SNORD19.2-201ENST00000516978 73 ntBASIC4.89□□□□□ -1.63
CCDC9Q9Y3X0 AC087854.1-201ENST00000519706 414 ntBASIC4.89□□□□□ -1.63
CCDC9Q9Y3X0 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC4.89□□□□□ -1.63
CCDC9Q9Y3X0 AC008638.3-201ENST00000603341 463 ntBASIC4.89□□□□□ -1.63
CCDC9Q9Y3X0 APOOP1-201ENST00000604695 592 ntBASIC4.89□□□□□ -1.63
CCDC9Q9Y3X0 RNU6-85P-201ENST00000605989 107 ntBASIC4.89□□□□□ -1.63
CCDC9Q9Y3X0 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC9Q9Y3X0 AC022306.2-201ENST00000617563 647 ntBASIC4.89□□□□□ -1.63
CCDC9Q9Y3X0 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
CCDC9Q9Y3X0 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 RNU6-37P-201ENST00000362692 107 ntBASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 RNU6-11P-201ENST00000364234 107 ntBASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 RNU6-7-201ENST00000364784 107 ntBASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 RNU6-8-201ENST00000365467 107 ntBASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 RNU6-25P-201ENST00000383873 107 ntBASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 RNU6-1-201ENST00000383898 107 ntBASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 Y_RNA.390-201ENST00000383932 102 ntBASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 RNU6-48P-201ENST00000384161 107 ntBASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 RNU6-36P-201ENST00000384172 107 ntBASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 RNU6-4P-201ENST00000384205 107 ntBASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 RNU6-5P-201ENST00000384238 107 ntBASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 RNU6-3P-201ENST00000384314 107 ntBASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 RNU6-16P-201ENST00000384385 107 ntBASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 RNU6-15P-201ENST00000384534 107 ntBASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 RNU6-2-201ENST00000384627 107 ntBASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 RNU6-29P-201ENST00000384637 107 ntBASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 RNU6-9-201ENST00000384776 107 ntBASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 RNU6-33P-201ENST00000384793 107 ntBASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 RNU6-750P-201ENST00000390946 107 ntBASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 RPL7P12-201ENST00000446719 750 ntBASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 RBMY2UP-201ENST00000453474 324 ntBASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 AC006517.1-201ENST00000480485 328 ntBASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 AC096576.1-201ENST00000489014 359 ntBASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 RN7SL504P-201ENST00000494496 287 ntBASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC4.88□□□□□ -1.63
CCDC9Q9Y3X0 AC116655.1-201ENST00000508324 901 ntBASIC4.88□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 134.6 ms