Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CHMP3Q9Y3E7 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
CHMP3Q9Y3E7 SNORD50.1-201ENST00000362987 71 ntBASIC5.17□□□□□ -1.58
CHMP3Q9Y3E7 RNU6-1167P-201ENST00000363227 94 ntBASIC5.17□□□□□ -1.58
CHMP3Q9Y3E7 RNU6-774P-201ENST00000363238 107 ntBASIC5.17□□□□□ -1.58
CHMP3Q9Y3E7 U3.6-201ENST00000363622 211 ntBASIC5.17□□□□□ -1.58
CHMP3Q9Y3E7 RNU6-395P-201ENST00000365662 106 ntBASIC5.17□□□□□ -1.58
CHMP3Q9Y3E7 SNORA19-201ENST00000384737 128 ntBASIC5.17□□□□□ -1.58
CHMP3Q9Y3E7 RNA5SP146-201ENST00000410743 123 ntBASIC5.17□□□□□ -1.58
CHMP3Q9Y3E7 SDAD1P3-201ENST00000427380 333 ntBASIC5.17□□□□□ -1.58
CHMP3Q9Y3E7 AC004383.1-201ENST00000438135 289 ntBASIC5.17□□□□□ -1.58
CHMP3Q9Y3E7 RNA5SP246-201ENST00000458909 119 ntBASIC5.17□□□□□ -1.58
CHMP3Q9Y3E7 AC087588.1-201ENST00000462203 316 ntBASIC5.17□□□□□ -1.58
CHMP3Q9Y3E7 RNA5SP360-201ENST00000516555 118 ntBASIC5.17□□□□□ -1.58
CHMP3Q9Y3E7 RNU6-143P-201ENST00000516942 93 ntBASIC5.17□□□□□ -1.58
CHMP3Q9Y3E7 IGKV3OR22-2-201ENST00000517943 313 ntBASIC5.17□□□□□ -1.58
CHMP3Q9Y3E7 UTP23-205ENST00000520733 369 ntTSL 3 BASIC5.17□□□□□ -1.58
CHMP3Q9Y3E7 AC084851.1-201ENST00000529105 249 ntBASIC5.17□□□□□ -1.58
CHMP3Q9Y3E7 AC100770.1-201ENST00000532310 322 ntBASIC5.17□□□□□ -1.58
CHMP3Q9Y3E7 AC103996.1-201ENST00000555468 102 ntBASIC5.17□□□□□ -1.58
CHMP3Q9Y3E7 MIR4458-201ENST00000578872 75 ntBASIC5.17□□□□□ -1.58
CHMP3Q9Y3E7 FTX_2.1-201ENST00000618816 94 ntBASIC5.17□□□□□ -1.58
CHMP3Q9Y3E7 AL450472.1-202ENST00000637286 180 ntBASIC5.17□□□□□ -1.58
CHMP3Q9Y3E7 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC5.17□□□□□ -1.58
CHMP3Q9Y3E7 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CHMP3Q9Y3E7 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC5.17□□□□□ -1.58
CHMP3Q9Y3E7 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
CHMP3Q9Y3E7 Z75746.1-201ENST00000440243 2080 ntBASIC5.17□□□□□ -1.58
CHMP3Q9Y3E7 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CHMP3Q9Y3E7 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC5.16□□□□□ -1.58
CHMP3Q9Y3E7 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
CHMP3Q9Y3E7 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC5.16□□□□□ -1.58
CHMP3Q9Y3E7 RNU1-15P-201ENST00000353977 144 ntBASIC5.16□□□□□ -1.58
CHMP3Q9Y3E7 Y_RNA.65-201ENST00000362846 100 ntBASIC5.16□□□□□ -1.58
CHMP3Q9Y3E7 RNU6-280P-201ENST00000364145 104 ntBASIC5.16□□□□□ -1.58
CHMP3Q9Y3E7 RNA5SP513-201ENST00000364648 118 ntBASIC5.16□□□□□ -1.58
CHMP3Q9Y3E7 RNU1-64P-201ENST00000365443 163 ntBASIC5.16□□□□□ -1.58
CHMP3Q9Y3E7 MIR301A-201ENST00000385261 86 ntBASIC5.16□□□□□ -1.58
CHMP3Q9Y3E7 PPIAP31-201ENST00000405422 495 ntBASIC5.16□□□□□ -1.58
CHMP3Q9Y3E7 AL603910.2-201ENST00000407268 136 ntBASIC5.16□□□□□ -1.58
CHMP3Q9Y3E7 AL158156.1-201ENST00000422509 473 ntBASIC5.16□□□□□ -1.58
CHMP3Q9Y3E7 MTND3P9-201ENST00000429526 346 ntBASIC5.16□□□□□ -1.58
CHMP3Q9Y3E7 AC006011.1-201ENST00000442758 349 ntBASIC5.16□□□□□ -1.58
CHMP3Q9Y3E7 AC067942.3-201ENST00000512025 362 ntBASIC5.16□□□□□ -1.58
CHMP3Q9Y3E7 IGKV2-23-201ENST00000518729 323 ntBASIC5.16□□□□□ -1.58
CHMP3Q9Y3E7 DEFB108E-201ENST00000524692 240 ntBASIC5.16□□□□□ -1.58
CHMP3Q9Y3E7 MIR1254-2-201ENST00000579553 63 ntBASIC5.16□□□□□ -1.58
CHMP3Q9Y3E7 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC5.16□□□□□ -1.58
CHMP3Q9Y3E7 AC002545.1-201ENST00000592511 181 ntBASIC5.16□□□□□ -1.58
CHMP3Q9Y3E7 AC107294.1-201ENST00000609524 467 ntBASIC5.16□□□□□ -1.58
CHMP3Q9Y3E7 AC009318.2-201ENST00000610917 651 ntBASIC5.16□□□□□ -1.58
CHMP3Q9Y3E7 AC092442.1-201ENST00000636216 138 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
CHMP3Q9Y3E7 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
CHMP3Q9Y3E7 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC5.16□□□□□ -1.58
CHMP3Q9Y3E7 HSPA8P1-201ENST00000425843 1833 ntBASIC5.16□□□□□ -1.58
CHMP3Q9Y3E7 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC5.15□□□□□ -1.58
CHMP3Q9Y3E7 AP001148.1-201ENST00000624124 2359 ntBASIC5.15□□□□□ -1.58
CHMP3Q9Y3E7 AL391987.6-201ENST00000305671 199 ntBASIC5.15□□□□□ -1.59
CHMP3Q9Y3E7 Y_RNA.54-201ENST00000362766 105 ntBASIC5.15□□□□□ -1.59
CHMP3Q9Y3E7 LAP3P1-201ENST00000403648 294 ntBASIC5.15□□□□□ -1.59
CHMP3Q9Y3E7 HSPE1P12-201ENST00000412576 301 ntBASIC5.15□□□□□ -1.59
CHMP3Q9Y3E7 MTCO1P39-201ENST00000426148 480 ntBASIC5.15□□□□□ -1.59
CHMP3Q9Y3E7 TRAPPC2P9-201ENST00000434556 343 ntBASIC5.15□□□□□ -1.59
CHMP3Q9Y3E7 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC5.15□□□□□ -1.59
CHMP3Q9Y3E7 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC5.15□□□□□ -1.59
CHMP3Q9Y3E7 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC5.15□□□□□ -1.59
CHMP3Q9Y3E7 MIR8076-201ENST00000611401 83 ntBASIC5.15□□□□□ -1.59
CHMP3Q9Y3E7 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC5.15□□□□□ -1.59
CHMP3Q9Y3E7 SMCR2_2.1-201ENST00000619783 161 ntBASIC5.15□□□□□ -1.59
CHMP3Q9Y3E7 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.59
CHMP3Q9Y3E7 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CHMP3Q9Y3E7 AC016588.2-201ENST00000632484 3021 ntBASIC5.14□□□□□ -1.59
CHMP3Q9Y3E7 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC5.14□□□□□ -1.59
CHMP3Q9Y3E7 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
CHMP3Q9Y3E7 MIR514A1-201ENST00000385133 98 ntBASIC5.14□□□□□ -1.59
CHMP3Q9Y3E7 AL117339.3-201ENST00000418733 162 ntBASIC5.14□□□□□ -1.59
CHMP3Q9Y3E7 RPL23AP45-201ENST00000476406 468 ntBASIC5.14□□□□□ -1.59
CHMP3Q9Y3E7 RNU5B-3P-201ENST00000516601 115 ntBASIC5.14□□□□□ -1.59
CHMP3Q9Y3E7 IGHVII-53-1-201ENST00000519538 255 ntBASIC5.14□□□□□ -1.59
CHMP3Q9Y3E7 AC136932.1-201ENST00000574771 208 ntBASIC5.14□□□□□ -1.59
CHMP3Q9Y3E7 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC5.14□□□□□ -1.59
CHMP3Q9Y3E7 AC004852.3-201ENST00000614131 326 ntBASIC5.14□□□□□ -1.59
CHMP3Q9Y3E7 AC004792.1-201ENST00000614523 137 ntBASIC5.14□□□□□ -1.59
CHMP3Q9Y3E7 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
CHMP3Q9Y3E7 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC5.14□□□□□ -1.59
CHMP3Q9Y3E7 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC5.14□□□□□ -1.59
CHMP3Q9Y3E7 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
CHMP3Q9Y3E7 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
CHMP3Q9Y3E7 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
CHMP3Q9Y3E7 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC5.13□□□□□ -1.59
CHMP3Q9Y3E7 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC5.13□□□□□ -1.59
CHMP3Q9Y3E7 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
CHMP3Q9Y3E7 Y_RNA.16-201ENST00000362421 102 ntBASIC5.13□□□□□ -1.59
CHMP3Q9Y3E7 Y_RNA.27-201ENST00000362540 103 ntBASIC5.13□□□□□ -1.59
CHMP3Q9Y3E7 Y_RNA.180-201ENST00000363867 113 ntBASIC5.13□□□□□ -1.59
CHMP3Q9Y3E7 RN7SKP280-201ENST00000364196 304 ntBASIC5.13□□□□□ -1.59
CHMP3Q9Y3E7 SNORD14B-201ENST00000364533 90 ntBASIC5.13□□□□□ -1.59
CHMP3Q9Y3E7 Y_RNA.297-201ENST00000364950 91 ntBASIC5.13□□□□□ -1.59
CHMP3Q9Y3E7 RNU6-356P-201ENST00000384140 107 ntBASIC5.13□□□□□ -1.59
CHMP3Q9Y3E7 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 122.4 ms