Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AL445687.1-201ENST00000439946 251 ntBASIC2.41□□□□□ -2.02
LHX3Q9UBR4 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
LHX3Q9UBR4 AL136380.1-201ENST00000447970 162 ntBASIC2.41□□□□□ -2.02
LHX3Q9UBR4 PCDH9-AS4-201ENST00000456459 436 ntTSL 3 BASIC2.41□□□□□ -2.02
LHX3Q9UBR4 RNA5SP269-201ENST00000459032 137 ntBASIC2.41□□□□□ -2.02
LHX3Q9UBR4 AC117522.1-201ENST00000509821 380 ntBASIC2.41□□□□□ -2.02
LHX3Q9UBR4 AC091965.2-201ENST00000512324 613 ntBASIC2.41□□□□□ -2.02
LHX3Q9UBR4 SNORA31.19-201ENST00000517079 126 ntBASIC2.41□□□□□ -2.02
LHX3Q9UBR4 OR5BN1P-201ENST00000532955 829 ntBASIC2.41□□□□□ -2.02
LHX3Q9UBR4 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC2.41□□□□□ -2.02
LHX3Q9UBR4 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC2.41□□□□□ -2.02
LHX3Q9UBR4 LINC00933-203ENST00000559812 219 ntBASIC2.41□□□□□ -2.02
LHX3Q9UBR4 AC137800.2-201ENST00000574375 120 ntBASIC2.41□□□□□ -2.02
LHX3Q9UBR4 MIR3616-201ENST00000584070 92 ntBASIC2.41□□□□□ -2.02
LHX3Q9UBR4 AC091152.3-201ENST00000604227 325 ntBASIC2.41□□□□□ -2.02
LHX3Q9UBR4 Z94722.1-201ENST00000604328 474 ntBASIC2.41□□□□□ -2.02
LHX3Q9UBR4 AL158032.1-201ENST00000605401 106 ntBASIC2.41□□□□□ -2.02
LHX3Q9UBR4 AP001506.1-201ENST00000615444 211 ntBASIC2.41□□□□□ -2.02
LHX3Q9UBR4 PISRT1-201ENST00000626175 531 ntBASIC2.41□□□□□ -2.02
LHX3Q9UBR4 AC004944.1-201ENST00000517807 3059 ntBASIC2.41□□□□□ -2.02
LHX3Q9UBR4 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.41□□□□□ -2.02
LHX3Q9UBR4 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.4□□□□□ -2.02
LHX3Q9UBR4 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
LHX3Q9UBR4 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC2.4□□□□□ -2.03
LHX3Q9UBR4 MIR21-201ENST00000362134 72 ntBASIC2.4□□□□□ -2.03
LHX3Q9UBR4 Y_RNA.33-201ENST00000362591 102 ntBASIC2.4□□□□□ -2.03
LHX3Q9UBR4 RNU6-641P-201ENST00000384006 107 ntBASIC2.4□□□□□ -2.03
LHX3Q9UBR4 RNU6-19P-201ENST00000384718 107 ntBASIC2.4□□□□□ -2.03
LHX3Q9UBR4 RNY3P9-201ENST00000384727 106 ntBASIC2.4□□□□□ -2.03
LHX3Q9UBR4 RPS4XP7-201ENST00000406274 780 ntBASIC2.4□□□□□ -2.03
LHX3Q9UBR4 RPL19P1-201ENST00000411635 428 ntBASIC2.4□□□□□ -2.03
LHX3Q9UBR4 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC2.4□□□□□ -2.03
LHX3Q9UBR4 OR51A5P-201ENST00000415429 942 ntBASIC2.4□□□□□ -2.03
LHX3Q9UBR4 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC2.4□□□□□ -2.03
LHX3Q9UBR4 PTGES3P4-201ENST00000426243 356 ntBASIC2.4□□□□□ -2.03
LHX3Q9UBR4 AC007560.1-201ENST00000426912 237 ntBASIC2.4□□□□□ -2.03
LHX3Q9UBR4 ISCA1P6-201ENST00000427740 390 ntBASIC2.4□□□□□ -2.03
LHX3Q9UBR4 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC2.4□□□□□ -2.03
LHX3Q9UBR4 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC2.4□□□□□ -2.03
LHX3Q9UBR4 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC2.4□□□□□ -2.03
LHX3Q9UBR4 EIF4EP3-201ENST00000498782 656 ntBASIC2.4□□□□□ -2.03
LHX3Q9UBR4 LAMTOR3P2-201ENST00000504479 232 ntBASIC2.4□□□□□ -2.03
LHX3Q9UBR4 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC2.4□□□□□ -2.03
LHX3Q9UBR4 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC2.4□□□□□ -2.03
LHX3Q9UBR4 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC2.4□□□□□ -2.03
LHX3Q9UBR4 RPPH1-2P-201ENST00000516688 293 ntBASIC2.4□□□□□ -2.03
LHX3Q9UBR4 RNU6-826P-201ENST00000516827 104 ntBASIC2.4□□□□□ -2.03
LHX3Q9UBR4 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC2.4□□□□□ -2.03
LHX3Q9UBR4 ADI1P3-201ENST00000549509 470 ntBASIC2.4□□□□□ -2.03
LHX3Q9UBR4 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC2.4□□□□□ -2.03
LHX3Q9UBR4 MIR4513-201ENST00000581077 86 ntBASIC2.4□□□□□ -2.03
LHX3Q9UBR4 AL590229.1-201ENST00000603497 542 ntBASIC2.4□□□□□ -2.03
LHX3Q9UBR4 SEPT7P9-203ENST00000604116 343 ntBASIC2.4□□□□□ -2.03
LHX3Q9UBR4 RPL23AP88-201ENST00000605759 454 ntBASIC2.4□□□□□ -2.03
LHX3Q9UBR4 MIR6134-201ENST00000617606 109 ntBASIC2.4□□□□□ -2.03
LHX3Q9UBR4 MIR3974-201ENST00000637126 96 ntBASIC2.4□□□□□ -2.03
LHX3Q9UBR4 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.4□□□□□ -2.03
LHX3Q9UBR4 FARSBP1-201ENST00000435808 1778 ntBASIC2.39□□□□□ -2.03
LHX3Q9UBR4 U8.8-201ENST00000365399 135 ntBASIC2.39□□□□□ -2.03
LHX3Q9UBR4 RNU6-395P-201ENST00000365662 106 ntBASIC2.39□□□□□ -2.03
LHX3Q9UBR4 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
LHX3Q9UBR4 Z98749.2-208ENST00000381646 500 ntBASIC2.39□□□□□ -2.03
LHX3Q9UBR4 DEFA7P-201ENST00000382676 285 ntBASIC2.39□□□□□ -2.03
LHX3Q9UBR4 RNU1-109P-201ENST00000383960 147 ntBASIC2.39□□□□□ -2.03
LHX3Q9UBR4 RNU6-297P-201ENST00000384636 107 ntBASIC2.39□□□□□ -2.03
LHX3Q9UBR4 SNORA40C-201ENST00000391285 128 ntBASIC2.39□□□□□ -2.03
LHX3Q9UBR4 RNU6-1328P-201ENST00000410938 106 ntBASIC2.39□□□□□ -2.03
LHX3Q9UBR4 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC2.39□□□□□ -2.03
LHX3Q9UBR4 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC2.39□□□□□ -2.03
LHX3Q9UBR4 MYL8P-204ENST00000431574 518 ntBASIC2.39□□□□□ -2.03
LHX3Q9UBR4 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC2.39□□□□□ -2.03
LHX3Q9UBR4 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.39□□□□□ -2.03
LHX3Q9UBR4 AC073614.1-201ENST00000438690 650 ntBASIC2.39□□□□□ -2.03
LHX3Q9UBR4 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.39□□□□□ -2.03
LHX3Q9UBR4 AL078601.1-201ENST00000444542 271 ntBASIC2.39□□□□□ -2.03
LHX3Q9UBR4 GAPDHP17-201ENST00000449858 1001 ntBASIC2.39□□□□□ -2.03
LHX3Q9UBR4 AC003071.1-201ENST00000451219 789 ntBASIC2.39□□□□□ -2.03
LHX3Q9UBR4 SNORD42A-201ENST00000459584 64 ntBASIC2.39□□□□□ -2.03
LHX3Q9UBR4 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC2.39□□□□□ -2.03
LHX3Q9UBR4 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.39□□□□□ -2.03
LHX3Q9UBR4 AC108078.2-201ENST00000510750 236 ntBASIC2.39□□□□□ -2.03
LHX3Q9UBR4 AC010486.3-201ENST00000511602 785 ntBASIC2.39□□□□□ -2.03
LHX3Q9UBR4 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC2.39□□□□□ -2.03
LHX3Q9UBR4 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC2.39□□□□□ -2.03
LHX3Q9UBR4 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC2.39□□□□□ -2.03
LHX3Q9UBR4 RNU6-581P-201ENST00000516214 105 ntBASIC2.39□□□□□ -2.03
LHX3Q9UBR4 SNORA31.6-201ENST00000516241 130 ntBASIC2.39□□□□□ -2.03
LHX3Q9UBR4 BTF3P12-201ENST00000519620 469 ntBASIC2.39□□□□□ -2.03
LHX3Q9UBR4 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC2.39□□□□□ -2.03
LHX3Q9UBR4 AC087883.1-201ENST00000551882 391 ntBASIC2.39□□□□□ -2.03
LHX3Q9UBR4 AC060766.3-201ENST00000591442 263 ntBASIC2.39□□□□□ -2.03
LHX3Q9UBR4 AL356280.1-201ENST00000603614 379 ntBASIC2.39□□□□□ -2.03
LHX3Q9UBR4 AL139286.2-201ENST00000606838 396 ntBASIC2.39□□□□□ -2.03
LHX3Q9UBR4 AC024940.5-201ENST00000622889 474 ntBASIC2.39□□□□□ -2.03
LHX3Q9UBR4 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.39□□□□□ -2.03
LHX3Q9UBR4 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
LHX3Q9UBR4 AC006020.1-201ENST00000420179 1854 ntBASIC2.39□□□□□ -2.03
LHX3Q9UBR4 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.39□□□□□ -2.03
LHX3Q9UBR4 Z82195.2-201ENST00000612348 18351 ntBASIC2.38□□□□□ -2.03
LHX3Q9UBR4 AC103710.2-202ENST00000641454 2853 ntBASIC2.38□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms