Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.47□□□□□ -2.01
DDX28Q9NUL7 AC091152.3-201ENST00000604227 325 ntBASIC2.47□□□□□ -2.01
DDX28Q9NUL7 AC064872.1-201ENST00000604823 1072 ntBASIC2.47□□□□□ -2.01
DDX28Q9NUL7 AL158032.1-201ENST00000605401 106 ntBASIC2.47□□□□□ -2.01
DDX28Q9NUL7 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.47□□□□□ -2.01
DDX28Q9NUL7 AC012409.4-201ENST00000612923 249 ntBASIC2.47□□□□□ -2.01
DDX28Q9NUL7 AL158063.1-201ENST00000615349 536 ntBASIC2.47□□□□□ -2.01
DDX28Q9NUL7 MIR6134-201ENST00000617606 109 ntBASIC2.47□□□□□ -2.01
DDX28Q9NUL7 AC004520.1-201ENST00000608362 1413 ntBASIC2.47□□□□□ -2.01
DDX28Q9NUL7 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.46□□□□□ -2.01
DDX28Q9NUL7 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.46□□□□□ -2.02
DDX28Q9NUL7 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
DDX28Q9NUL7 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
DDX28Q9NUL7 Z98749.2-208ENST00000381646 500 ntBASIC2.46□□□□□ -2.02
DDX28Q9NUL7 RNU6-1083P-201ENST00000384022 107 ntBASIC2.46□□□□□ -2.02
DDX28Q9NUL7 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
DDX28Q9NUL7 RN7SKP142-201ENST00000411236 328 ntBASIC2.46□□□□□ -2.02
DDX28Q9NUL7 OR51A5P-201ENST00000415429 942 ntBASIC2.46□□□□□ -2.02
DDX28Q9NUL7 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC2.46□□□□□ -2.02
DDX28Q9NUL7 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.46□□□□□ -2.02
DDX28Q9NUL7 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.46□□□□□ -2.02
DDX28Q9NUL7 MTND2P4-201ENST00000445034 1004 ntBASIC2.46□□□□□ -2.02
DDX28Q9NUL7 AC011753.1-201ENST00000451001 220 ntBASIC2.46□□□□□ -2.02
DDX28Q9NUL7 RGS5-217ENST00000451759 835 ntTSL 3 BASIC2.46□□□□□ -2.02
DDX28Q9NUL7 AC233279.1-201ENST00000455300 423 ntBASIC2.46□□□□□ -2.02
DDX28Q9NUL7 AC133134.1-201ENST00000466800 359 ntBASIC2.46□□□□□ -2.02
DDX28Q9NUL7 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC2.46□□□□□ -2.02
DDX28Q9NUL7 LAMTOR3P2-201ENST00000504479 232 ntBASIC2.46□□□□□ -2.02
DDX28Q9NUL7 SNORA31.11-201ENST00000516528 139 ntBASIC2.46□□□□□ -2.02
DDX28Q9NUL7 Y_RNA.688-201ENST00000516565 95 ntBASIC2.46□□□□□ -2.02
DDX28Q9NUL7 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.46□□□□□ -2.02
DDX28Q9NUL7 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.46□□□□□ -2.02
DDX28Q9NUL7 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.46□□□□□ -2.02
DDX28Q9NUL7 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC2.46□□□□□ -2.02
DDX28Q9NUL7 MIR3117-201ENST00000584034 78 ntBASIC2.46□□□□□ -2.02
DDX28Q9NUL7 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.46□□□□□ -2.02
DDX28Q9NUL7 AC245014.2-201ENST00000603689 287 ntBASIC2.46□□□□□ -2.02
DDX28Q9NUL7 AL022154.1-201ENST00000604698 785 ntBASIC2.46□□□□□ -2.02
DDX28Q9NUL7 AC246785.4-201ENST00000605374 287 ntBASIC2.46□□□□□ -2.02
DDX28Q9NUL7 AC116312.1-201ENST00000606841 314 ntBASIC2.46□□□□□ -2.02
DDX28Q9NUL7 AC135507.1-201ENST00000607214 561 ntBASIC2.46□□□□□ -2.02
DDX28Q9NUL7 AC005046.1-201ENST00000608515 625 ntBASIC2.46□□□□□ -2.02
DDX28Q9NUL7 MIR6895-201ENST00000613497 78 ntBASIC2.46□□□□□ -2.02
DDX28Q9NUL7 AC022079.1-201ENST00000621546 602 ntBASIC2.46□□□□□ -2.02
DDX28Q9NUL7 AC138649.3-201ENST00000622154 254 ntBASIC2.46□□□□□ -2.02
DDX28Q9NUL7 Z69908.1-201ENST00000622603 247 ntBASIC2.46□□□□□ -2.02
DDX28Q9NUL7 AC024940.5-201ENST00000622889 474 ntBASIC2.46□□□□□ -2.02
DDX28Q9NUL7 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.46□□□□□ -2.02
DDX28Q9NUL7 AC080100.1-201ENST00000624239 5356 ntBASIC2.46□□□□□ -2.02
DDX28Q9NUL7 AC010329.5-201ENST00000623497 2174 ntBASIC2.46□□□□□ -2.02
DDX28Q9NUL7 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
DDX28Q9NUL7 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC2.45□□□□□ -2.02
DDX28Q9NUL7 RNU6-61P-201ENST00000365528 109 ntBASIC2.45□□□□□ -2.02
DDX28Q9NUL7 RNU1-52P-201ENST00000384190 164 ntBASIC2.45□□□□□ -2.02
DDX28Q9NUL7 RNU6-19P-201ENST00000384718 107 ntBASIC2.45□□□□□ -2.02
DDX28Q9NUL7 AL139413.1-201ENST00000421309 217 ntBASIC2.45□□□□□ -2.02
DDX28Q9NUL7 AC007560.1-201ENST00000426912 237 ntBASIC2.45□□□□□ -2.02
DDX28Q9NUL7 MYL8P-204ENST00000431574 518 ntBASIC2.45□□□□□ -2.02
DDX28Q9NUL7 AL139132.1-201ENST00000431587 344 ntBASIC2.45□□□□□ -2.02
DDX28Q9NUL7 MTATP6P16-201ENST00000434543 526 ntBASIC2.45□□□□□ -2.02
DDX28Q9NUL7 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC2.45□□□□□ -2.02
DDX28Q9NUL7 AL078601.1-201ENST00000444542 271 ntBASIC2.45□□□□□ -2.02
DDX28Q9NUL7 AC079781.2-201ENST00000446424 169 ntBASIC2.45□□□□□ -2.02
DDX28Q9NUL7 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC2.45□□□□□ -2.02
DDX28Q9NUL7 RN7SL429P-201ENST00000479090 223 ntBASIC2.45□□□□□ -2.02
DDX28Q9NUL7 RN7SL489P-201ENST00000486185 223 ntBASIC2.45□□□□□ -2.02
DDX28Q9NUL7 MRPL42P6-201ENST00000486397 371 ntBASIC2.45□□□□□ -2.02
DDX28Q9NUL7 RN7SL327P-201ENST00000488659 223 ntBASIC2.45□□□□□ -2.02
DDX28Q9NUL7 GZMAP1-201ENST00000503054 631 ntBASIC2.45□□□□□ -2.02
DDX28Q9NUL7 AC116562.3-201ENST00000506136 177 ntBASIC2.45□□□□□ -2.02
DDX28Q9NUL7 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC2.45□□□□□ -2.02
DDX28Q9NUL7 RNA5SP356-201ENST00000515972 94 ntBASIC2.45□□□□□ -2.02
DDX28Q9NUL7 RNU6-123P-201ENST00000516163 102 ntBASIC2.45□□□□□ -2.02
DDX28Q9NUL7 Y_RNA.695-201ENST00000516715 107 ntBASIC2.45□□□□□ -2.02
DDX28Q9NUL7 SNORA31.18-201ENST00000517043 134 ntBASIC2.45□□□□□ -2.02
DDX28Q9NUL7 RNA5SP402-201ENST00000517148 110 ntBASIC2.45□□□□□ -2.02
DDX28Q9NUL7 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC2.45□□□□□ -2.02
DDX28Q9NUL7 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.45□□□□□ -2.02
DDX28Q9NUL7 AC068587.5-201ENST00000528506 175 ntBASIC2.45□□□□□ -2.02
DDX28Q9NUL7 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC2.45□□□□□ -2.02
DDX28Q9NUL7 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC2.45□□□□□ -2.02
DDX28Q9NUL7 AC098848.2-201ENST00000588023 330 ntBASIC2.45□□□□□ -2.02
DDX28Q9NUL7 AC087752.4-201ENST00000605911 462 ntBASIC2.45□□□□□ -2.02
DDX28Q9NUL7 AL121992.2-201ENST00000606262 256 ntBASIC2.45□□□□□ -2.02
DDX28Q9NUL7 RN7SL853P-201ENST00000617250 223 ntBASIC2.45□□□□□ -2.02
DDX28Q9NUL7 ELL2P3-201ENST00000457883 1602 ntBASIC2.45□□□□□ -2.02
DDX28Q9NUL7 CDC27P3-201ENST00000635418 1910 ntBASIC2.44□□□□□ -2.02
DDX28Q9NUL7 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.44□□□□□ -2.02
DDX28Q9NUL7 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
DDX28Q9NUL7 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
DDX28Q9NUL7 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
DDX28Q9NUL7 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC2.44□□□□□ -2.02
DDX28Q9NUL7 RNU6-179P-201ENST00000363350 107 ntBASIC2.44□□□□□ -2.02
DDX28Q9NUL7 Y_RNA.201-201ENST00000364052 96 ntBASIC2.44□□□□□ -2.02
DDX28Q9NUL7 RNU6-166P-201ENST00000384371 107 ntBASIC2.44□□□□□ -2.02
DDX28Q9NUL7 RNU6-387P-201ENST00000411331 105 ntBASIC2.44□□□□□ -2.02
DDX28Q9NUL7 C1DP2-201ENST00000418167 426 ntBASIC2.44□□□□□ -2.02
DDX28Q9NUL7 AL160275.3-201ENST00000423876 471 ntBASIC2.44□□□□□ -2.02
DDX28Q9NUL7 RPL31P35-201ENST00000431058 377 ntBASIC2.44□□□□□ -2.02
DDX28Q9NUL7 CR769767.1-201ENST00000436337 346 ntBASIC2.44□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 118.6 ms