Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 HIGD1AP2-201ENST00000446367 280 ntBASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 Z75741.1-201ENST00000446793 314 ntBASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 AL163973.1-201ENST00000484753 577 ntBASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 AC091435.1-201ENST00000505442 584 ntBASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 IL7-206ENST00000520269 456 ntTSL 3 BASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 AP001893.2-201ENST00000526949 202 ntBASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 AC025678.1-201ENST00000567861 338 ntBASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 uc_338.14-201ENST00000613162 166 ntBASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 AC011890.2-201ENST00000613393 294 ntBASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 uc_338.25-201ENST00000613756 156 ntBASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 AC022306.2-201ENST00000617563 647 ntBASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 CR381653.2-201ENST00000624041 768 ntBASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HERPUD2Q9BSE4 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
HERPUD2Q9BSE4 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
HERPUD2Q9BSE4 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.3□□□□□ -1.88
HERPUD2Q9BSE4 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
HERPUD2Q9BSE4 AC093831.2-201ENST00000624393 3427 ntBASIC3.3□□□□□ -1.88
HERPUD2Q9BSE4 RNU6-552P-201ENST00000362869 119 ntBASIC3.3□□□□□ -1.88
HERPUD2Q9BSE4 RNU6-1085P-201ENST00000363576 107 ntBASIC3.3□□□□□ -1.88
HERPUD2Q9BSE4 RNU6-1322P-201ENST00000364309 107 ntBASIC3.3□□□□□ -1.88
HERPUD2Q9BSE4 Y_RNA.381-201ENST00000365666 102 ntBASIC3.3□□□□□ -1.88
HERPUD2Q9BSE4 RNU6-434P-201ENST00000384376 107 ntBASIC3.3□□□□□ -1.88
HERPUD2Q9BSE4 RNU6-393P-201ENST00000384475 107 ntBASIC3.3□□□□□ -1.88
HERPUD2Q9BSE4 RNU6-903P-201ENST00000391270 109 ntBASIC3.3□□□□□ -1.88
HERPUD2Q9BSE4 FO393413.1-201ENST00000402892 195 ntBASIC3.3□□□□□ -1.88
HERPUD2Q9BSE4 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC3.3□□□□□ -1.88
HERPUD2Q9BSE4 TIMM9P3-201ENST00000428659 274 ntBASIC3.3□□□□□ -1.88
HERPUD2Q9BSE4 AL589823.1-201ENST00000429577 183 ntBASIC3.3□□□□□ -1.88
HERPUD2Q9BSE4 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC3.3□□□□□ -1.88
HERPUD2Q9BSE4 MTND1P34-201ENST00000438556 671 ntBASIC3.3□□□□□ -1.88
HERPUD2Q9BSE4 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.3□□□□□ -1.88
HERPUD2Q9BSE4 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC3.3□□□□□ -1.88
HERPUD2Q9BSE4 SCARNA18-201ENST00000459004 134 ntBASIC3.3□□□□□ -1.88
HERPUD2Q9BSE4 RN7SL75P-201ENST00000461926 281 ntBASIC3.3□□□□□ -1.88
HERPUD2Q9BSE4 AC110794.1-201ENST00000505816 425 ntBASIC3.3□□□□□ -1.88
HERPUD2Q9BSE4 SNORA31.18-201ENST00000517043 134 ntBASIC3.3□□□□□ -1.88
HERPUD2Q9BSE4 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.3□□□□□ -1.88
HERPUD2Q9BSE4 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC3.3□□□□□ -1.88
HERPUD2Q9BSE4 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
HERPUD2Q9BSE4 AP005435.4-201ENST00000529514 284 ntBASIC3.3□□□□□ -1.88
HERPUD2Q9BSE4 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC3.3□□□□□ -1.88
HERPUD2Q9BSE4 OR1M4P-201ENST00000589199 287 ntBASIC3.3□□□□□ -1.88
HERPUD2Q9BSE4 AC073539.2-201ENST00000597113 165 ntBASIC3.3□□□□□ -1.88
HERPUD2Q9BSE4 AC012119.1-201ENST00000603184 222 ntBASIC3.3□□□□□ -1.88
HERPUD2Q9BSE4 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC3.3□□□□□ -1.88
HERPUD2Q9BSE4 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC3.3□□□□□ -1.88
HERPUD2Q9BSE4 MIR7153-201ENST00000637758 57 ntBASIC3.3□□□□□ -1.88
HERPUD2Q9BSE4 Y_RNA.255-201ENST00000364581 97 ntBASIC3.29□□□□□ -1.88
HERPUD2Q9BSE4 RNU6-72P-201ENST00000384285 79 ntBASIC3.29□□□□□ -1.88
HERPUD2Q9BSE4 SNORD70.1-201ENST00000391007 85 ntBASIC3.29□□□□□ -1.88
HERPUD2Q9BSE4 AL357075.1-201ENST00000404107 726 ntBASIC3.29□□□□□ -1.88
HERPUD2Q9BSE4 RAP1BP3-201ENST00000407180 549 ntBASIC3.29□□□□□ -1.88
HERPUD2Q9BSE4 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC3.29□□□□□ -1.88
HERPUD2Q9BSE4 RPL7P54-201ENST00000438336 674 ntBASIC3.29□□□□□ -1.88
HERPUD2Q9BSE4 RPS15AP7-201ENST00000439294 405 ntBASIC3.29□□□□□ -1.88
HERPUD2Q9BSE4 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC3.29□□□□□ -1.88
HERPUD2Q9BSE4 AC011825.1-201ENST00000484967 388 ntBASIC3.29□□□□□ -1.88
HERPUD2Q9BSE4 AC092185.1-201ENST00000491371 97 ntBASIC3.29□□□□□ -1.88
HERPUD2Q9BSE4 RNU1-86P-201ENST00000516108 154 ntBASIC3.29□□□□□ -1.88
HERPUD2Q9BSE4 RNU1-107P-201ENST00000516617 154 ntBASIC3.29□□□□□ -1.88
HERPUD2Q9BSE4 SNORA70.24-201ENST00000517233 118 ntBASIC3.29□□□□□ -1.88
HERPUD2Q9BSE4 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC3.29□□□□□ -1.88
HERPUD2Q9BSE4 AC245166.1-201ENST00000521012 253 ntBASIC3.29□□□□□ -1.88
HERPUD2Q9BSE4 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC3.29□□□□□ -1.88
HERPUD2Q9BSE4 AP004607.1-201ENST00000524456 203 ntBASIC3.29□□□□□ -1.88
HERPUD2Q9BSE4 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC3.29□□□□□ -1.88
HERPUD2Q9BSE4 BNIP3P6-201ENST00000549284 499 ntBASIC3.29□□□□□ -1.88
HERPUD2Q9BSE4 HIF1AP1-201ENST00000553642 175 ntBASIC3.29□□□□□ -1.88
HERPUD2Q9BSE4 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.29□□□□□ -1.88
HERPUD2Q9BSE4 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC3.29□□□□□ -1.88
HERPUD2Q9BSE4 NRBF2P5-201ENST00000603087 788 ntBASIC3.29□□□□□ -1.88
HERPUD2Q9BSE4 AP000787.2-201ENST00000604432 568 ntBASIC3.29□□□□□ -1.88
HERPUD2Q9BSE4 AL161756.2-201ENST00000604597 246 ntBASIC3.29□□□□□ -1.88
HERPUD2Q9BSE4 AP001330.5-201ENST00000607176 411 ntBASIC3.29□□□□□ -1.88
HERPUD2Q9BSE4 AC087241.4-201ENST00000612441 480 ntBASIC3.29□□□□□ -1.88
HERPUD2Q9BSE4 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC3.29□□□□□ -1.88
HERPUD2Q9BSE4 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC3.29□□□□□ -1.88
HERPUD2Q9BSE4 SCARNA4-202ENST00000625402 129 ntBASIC3.29□□□□□ -1.88
HERPUD2Q9BSE4 AC099654.12-201ENST00000639868 649 ntBASIC3.29□□□□□ -1.88
HERPUD2Q9BSE4 MTND5P30-201ENST00000452896 1731 ntBASIC3.29□□□□□ -1.88
HERPUD2Q9BSE4 AC006020.1-201ENST00000420179 1854 ntBASIC3.28□□□□□ -1.88
HERPUD2Q9BSE4 AC093010.3-201ENST00000570269 15214 ntBASIC3.28□□□□□ -1.88
HERPUD2Q9BSE4 ZNF66-201ENST00000344519 1745 ntAPPRIS P1 TSL 3 BASIC3.28□□□□□ -1.88
HERPUD2Q9BSE4 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HERPUD2Q9BSE4 AL139276.1-201ENST00000311910 1001 ntBASIC3.28□□□□□ -1.88
HERPUD2Q9BSE4 SNORD56.5-201ENST00000364281 72 ntBASIC3.28□□□□□ -1.88
HERPUD2Q9BSE4 RNU6-384P-201ENST00000364900 104 ntBASIC3.28□□□□□ -1.88
HERPUD2Q9BSE4 SNORD116-4-201ENST00000384733 96 ntBASIC3.28□□□□□ -1.88
HERPUD2Q9BSE4 SNORD37.1-201ENST00000390968 65 ntBASIC3.28□□□□□ -1.88
HERPUD2Q9BSE4 RPL21P3-201ENST00000395517 478 ntBASIC3.28□□□□□ -1.88
HERPUD2Q9BSE4 RPS4XP7-201ENST00000406274 780 ntBASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 91.3 ms