Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 uc_338.12-201ENST00000616344 181 ntBASIC2.42□□□□□ -2.02
VPS39Q96JC1 AL589994.2-201ENST00000621124 579 ntBASIC2.42□□□□□ -2.02
VPS39Q96JC1 AC009878.1-201ENST00000621819 340 ntBASIC2.42□□□□□ -2.02
VPS39Q96JC1 U6.99-201ENST00000637524 83 ntBASIC2.42□□□□□ -2.02
VPS39Q96JC1 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
VPS39Q96JC1 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
VPS39Q96JC1 AC069528.2-201ENST00000624849 1991 ntBASIC2.41□□□□□ -2.02
VPS39Q96JC1 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
VPS39Q96JC1 SMIM11P1-201ENST00000369586 178 ntBASIC2.41□□□□□ -2.02
VPS39Q96JC1 SNORD116-8-201ENST00000384365 95 ntBASIC2.41□□□□□ -2.02
VPS39Q96JC1 MIR518C-201ENST00000384822 101 ntBASIC2.41□□□□□ -2.02
VPS39Q96JC1 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC2.41□□□□□ -2.02
VPS39Q96JC1 AC004383.1-201ENST00000438135 289 ntBASIC2.41□□□□□ -2.02
VPS39Q96JC1 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.41□□□□□ -2.02
VPS39Q96JC1 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC2.41□□□□□ -2.02
VPS39Q96JC1 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC2.41□□□□□ -2.02
VPS39Q96JC1 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC2.41□□□□□ -2.02
VPS39Q96JC1 RNU7-193P-201ENST00000516723 65 ntBASIC2.41□□□□□ -2.02
VPS39Q96JC1 RNU6-143P-201ENST00000516942 93 ntBASIC2.41□□□□□ -2.02
VPS39Q96JC1 RNU2-46P-201ENST00000517038 113 ntBASIC2.41□□□□□ -2.02
VPS39Q96JC1 RNU6-1183P-201ENST00000517054 60 ntBASIC2.41□□□□□ -2.02
VPS39Q96JC1 AC022878.1-201ENST00000530684 149 ntBASIC2.41□□□□□ -2.02
VPS39Q96JC1 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC2.41□□□□□ -2.02
VPS39Q96JC1 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.41□□□□□ -2.02
VPS39Q96JC1 AC067747.1-201ENST00000608026 250 ntBASIC2.41□□□□□ -2.02
VPS39Q96JC1 U4atac.1-201ENST00000618345 95 ntBASIC2.41□□□□□ -2.02
VPS39Q96JC1 AC078883.4-201ENST00000623218 367 ntBASIC2.41□□□□□ -2.02
VPS39Q96JC1 AC244517.12-201ENST00000623581 663 ntBASIC2.41□□□□□ -2.02
VPS39Q96JC1 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
VPS39Q96JC1 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.41□□□□□ -2.02
VPS39Q96JC1 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.4□□□□□ -2.02
VPS39Q96JC1 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.4□□□□□ -2.03
VPS39Q96JC1 RNU5E-1-201ENST00000362477 120 ntBASIC2.4□□□□□ -2.03
VPS39Q96JC1 RNU1-51P-201ENST00000365345 176 ntBASIC2.4□□□□□ -2.03
VPS39Q96JC1 RNU6-39P-201ENST00000384344 107 ntBASIC2.4□□□□□ -2.03
VPS39Q96JC1 RNU1-148P-201ENST00000384472 162 ntBASIC2.4□□□□□ -2.03
VPS39Q96JC1 RNU6-748P-201ENST00000384648 107 ntBASIC2.4□□□□□ -2.03
VPS39Q96JC1 MIR634-201ENST00000385208 97 ntBASIC2.4□□□□□ -2.03
VPS39Q96JC1 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
VPS39Q96JC1 AL359511.1-201ENST00000402970 211 ntBASIC2.4□□□□□ -2.03
VPS39Q96JC1 SLC44A3-AS1-205ENST00000424505 612 ntBASIC2.4□□□□□ -2.03
VPS39Q96JC1 PGBD4P3-201ENST00000440731 581 ntBASIC2.4□□□□□ -2.03
VPS39Q96JC1 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC2.4□□□□□ -2.03
VPS39Q96JC1 BRK1P2-201ENST00000442875 223 ntBASIC2.4□□□□□ -2.03
VPS39Q96JC1 AL109933.2-201ENST00000452651 260 ntBASIC2.4□□□□□ -2.03
VPS39Q96JC1 AC092001.1-201ENST00000453012 261 ntBASIC2.4□□□□□ -2.03
VPS39Q96JC1 AP001486.1-201ENST00000463339 476 ntBASIC2.4□□□□□ -2.03
VPS39Q96JC1 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC2.4□□□□□ -2.03
VPS39Q96JC1 AC008526.1-201ENST00000509149 338 ntBASIC2.4□□□□□ -2.03
VPS39Q96JC1 RNU6-581P-201ENST00000516214 105 ntBASIC2.4□□□□□ -2.03
VPS39Q96JC1 RNA5SP402-201ENST00000517148 110 ntBASIC2.4□□□□□ -2.03
VPS39Q96JC1 IGLV3-17-201ENST00000519099 244 ntBASIC2.4□□□□□ -2.03
VPS39Q96JC1 CBX3P7-201ENST00000532876 502 ntBASIC2.4□□□□□ -2.03
VPS39Q96JC1 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC2.4□□□□□ -2.03
VPS39Q96JC1 AC121758.2-201ENST00000553271 193 ntBASIC2.4□□□□□ -2.03
VPS39Q96JC1 RPL21P5-201ENST00000554662 472 ntBASIC2.4□□□□□ -2.03
VPS39Q96JC1 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC2.4□□□□□ -2.03
VPS39Q96JC1 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC2.4□□□□□ -2.03
VPS39Q96JC1 AC025165.5-201ENST00000602802 578 ntBASIC2.4□□□□□ -2.03
VPS39Q96JC1 AC025811.1-201ENST00000604312 472 ntBASIC2.4□□□□□ -2.03
VPS39Q96JC1 AC068276.1-201ENST00000605793 379 ntBASIC2.4□□□□□ -2.03
VPS39Q96JC1 RNU6-87P-201ENST00000607561 108 ntBASIC2.4□□□□□ -2.03
VPS39Q96JC1 AL603839.4-201ENST00000624658 1005 ntBASIC2.4□□□□□ -2.03
VPS39Q96JC1 AP003400.5-201ENST00000624827 617 ntBASIC2.4□□□□□ -2.03
VPS39Q96JC1 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.4□□□□□ -2.03
VPS39Q96JC1 RNU5E-6P-201ENST00000365574 115 ntBASIC2.39□□□□□ -2.03
VPS39Q96JC1 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC2.39□□□□□ -2.03
VPS39Q96JC1 RNU6-297P-201ENST00000384636 107 ntBASIC2.39□□□□□ -2.03
VPS39Q96JC1 AL355497.1-201ENST00000406262 551 ntBASIC2.39□□□□□ -2.03
VPS39Q96JC1 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC2.39□□□□□ -2.03
VPS39Q96JC1 Y_RNA.598-201ENST00000410480 95 ntBASIC2.39□□□□□ -2.03
VPS39Q96JC1 RNU2-63P-201ENST00000410792 194 ntBASIC2.39□□□□□ -2.03
VPS39Q96JC1 RNA5SP270-201ENST00000411361 118 ntBASIC2.39□□□□□ -2.03
VPS39Q96JC1 AC092809.3-201ENST00000415453 231 ntBASIC2.39□□□□□ -2.03
VPS39Q96JC1 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.39□□□□□ -2.03
VPS39Q96JC1 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC2.39□□□□□ -2.03
VPS39Q96JC1 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC2.39□□□□□ -2.03
VPS39Q96JC1 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC2.39□□□□□ -2.03
VPS39Q96JC1 AC104850.1-201ENST00000435940 476 ntBASIC2.39□□□□□ -2.03
VPS39Q96JC1 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC2.39□□□□□ -2.03
VPS39Q96JC1 NEFMP1-201ENST00000443423 1006 ntBASIC2.39□□□□□ -2.03
VPS39Q96JC1 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
VPS39Q96JC1 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
VPS39Q96JC1 SNRPGP9-201ENST00000456025 225 ntBASIC2.39□□□□□ -2.03
VPS39Q96JC1 OARD1-209ENST00000471367 401 ntTSL 2 BASIC2.39□□□□□ -2.03
VPS39Q96JC1 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC2.39□□□□□ -2.03
VPS39Q96JC1 AC118273.2-201ENST00000532092 465 ntBASIC2.39□□□□□ -2.03
VPS39Q96JC1 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC2.39□□□□□ -2.03
VPS39Q96JC1 RPS3AP4-201ENST00000555161 764 ntBASIC2.39□□□□□ -2.03
VPS39Q96JC1 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC2.39□□□□□ -2.03
VPS39Q96JC1 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC2.39□□□□□ -2.03
VPS39Q96JC1 AC007336.1-201ENST00000576365 3828 ntBASIC2.39□□□□□ -2.03
VPS39Q96JC1 CLIC4P2-201ENST00000601934 717 ntBASIC2.39□□□□□ -2.03
VPS39Q96JC1 Z99497.2-201ENST00000603634 310 ntBASIC2.39□□□□□ -2.03
VPS39Q96JC1 AL358072.1-201ENST00000604156 575 ntBASIC2.39□□□□□ -2.03
VPS39Q96JC1 AC121247.2-201ENST00000604776 136 ntBASIC2.39□□□□□ -2.03
VPS39Q96JC1 AL138963.2-201ENST00000605137 226 ntBASIC2.39□□□□□ -2.03
VPS39Q96JC1 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC2.39□□□□□ -2.03
VPS39Q96JC1 AC012360.2-201ENST00000609349 391 ntBASIC2.39□□□□□ -2.03
VPS39Q96JC1 AC091304.9-201ENST00000612091 226 ntBASIC2.39□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 106.9 ms