Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 Y_RNA.302-201ENST00000364997 102 ntBASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 MDM4-202ENST00000367180 547 ntTSL 3 BASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 RNU6-701P-201ENST00000384059 107 ntBASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 RNU6-301P-201ENST00000384277 107 ntBASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 MTND4P20-201ENST00000424125 869 ntBASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 TIMM9P1-201ENST00000436122 256 ntBASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 AC009238.1-201ENST00000442165 424 ntBASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 AC118469.1-201ENST00000442943 488 ntBASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 AC009237.6-201ENST00000446969 424 ntBASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 BTF3P15-201ENST00000455606 336 ntBASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 AC109486.1-201ENST00000486833 374 ntBASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 AC023194.1-201ENST00000493084 308 ntBASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 AC116655.1-201ENST00000508324 901 ntBASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 RN7SKP132-201ENST00000516001 208 ntBASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 AP003122.3-201ENST00000526316 255 ntBASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 AC084851.1-201ENST00000529105 249 ntBASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 AC013828.2-201ENST00000532487 235 ntBASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 AC079598.5-201ENST00000547460 117 ntBASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 AC007954.1-201ENST00000554198 494 ntBASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 Z94722.1-201ENST00000604328 474 ntBASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 AC122133.1-201ENST00000613964 233 ntBASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 AP001486.3-201ENST00000615334 372 ntBASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 AC138627.2-201ENST00000624202 601 ntBASIC2.34□□□□□ -2.03
ZNF540Q8NDQ6 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 RNU4-21P-201ENST00000362802 126 ntBASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 RNU6-288P-201ENST00000363690 104 ntBASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 RNA5SP88-201ENST00000365560 109 ntBASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 AL031577.2-201ENST00000404133 280 ntBASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 AL162578.1-201ENST00000406202 378 ntBASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 MORF4L1P6-201ENST00000418771 268 ntBASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 AC006366.1-201ENST00000422002 759 ntBASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 AL365338.1-201ENST00000422282 858 ntBASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 AIMP1P2-201ENST00000425294 312 ntBASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 AL592045.1-201ENST00000429867 352 ntBASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 UBE2FP3-201ENST00000436366 524 ntBASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 RPL7P36-201ENST00000444633 681 ntBASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 TAF9P1-201ENST00000445421 515 ntBASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 EPS15P1-201ENST00000448836 336 ntBASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 AC003071.1-201ENST00000451219 789 ntBASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 TAF9P2-201ENST00000454958 515 ntBASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 AC104685.1-201ENST00000502445 371 ntBASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 AC114781.4-201ENST00000513707 639 ntBASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 AC060788.1-201ENST00000521318 469 ntBASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 AKIRIN1P1-201ENST00000547384 544 ntBASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 AC027807.1-201ENST00000559921 996 ntBASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 AC105137.2-201ENST00000569073 466 ntBASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 AC040904.1-201ENST00000590850 223 ntBASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 AC112187.2-201ENST00000604345 283 ntBASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 AC064807.4-201ENST00000607201 407 ntBASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 AC091953.2-201ENST00000623979 160 ntBASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 AC007494.3-201ENST00000624660 743 ntBASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 IGHVIII-44-202ENST00000636235 289 ntBASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 AC010149.2-201ENST00000637608 315 ntBASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 AC080100.1-201ENST00000624239 5356 ntBASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 HSFY2-201ENST00000304790 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 HSFY1-201ENST00000307393 1444 ntAPPRIS P5 TSL 1 (best) BASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.33□□□□□ -2.04
ZNF540Q8NDQ6 MIR17-201ENST00000385012 84 ntBASIC2.32□□□□□ -2.04
ZNF540Q8NDQ6 RPS12P24-201ENST00000412619 387 ntBASIC2.32□□□□□ -2.04
ZNF540Q8NDQ6 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.32□□□□□ -2.04
ZNF540Q8NDQ6 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC2.32□□□□□ -2.04
ZNF540Q8NDQ6 ARL5AP4-201ENST00000430731 512 ntBASIC2.32□□□□□ -2.04
ZNF540Q8NDQ6 AL161788.1-201ENST00000441805 169 ntBASIC2.32□□□□□ -2.04
ZNF540Q8NDQ6 UBE2D3P4-201ENST00000441973 436 ntBASIC2.32□□□□□ -2.04
ZNF540Q8NDQ6 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC2.32□□□□□ -2.04
ZNF540Q8NDQ6 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.32□□□□□ -2.04
ZNF540Q8NDQ6 RPS3P1-201ENST00000456781 192 ntBASIC2.32□□□□□ -2.04
ZNF540Q8NDQ6 RPS27P21-201ENST00000486977 252 ntBASIC2.32□□□□□ -2.04
ZNF540Q8NDQ6 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC2.32□□□□□ -2.04
ZNF540Q8NDQ6 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC2.32□□□□□ -2.04
ZNF540Q8NDQ6 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC2.32□□□□□ -2.04
ZNF540Q8NDQ6 SNORA31.25-201ENST00000517242 134 ntBASIC2.32□□□□□ -2.04
ZNF540Q8NDQ6 AC012414.6-201ENST00000568241 401 ntBASIC2.32□□□□□ -2.04
ZNF540Q8NDQ6 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.32□□□□□ -2.04
ZNF540Q8NDQ6 BCRP9-201ENST00000605312 388 ntBASIC2.32□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 119.9 ms