Protein–RNA interactions for Protein: Q86UA1

PRPF39, Pre-mRNA-processing factor 39, humanhuman

Known RBP Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39Q86UA1 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.87□□□□□ -1.95
PRPF39Q86UA1 CDC27P3-201ENST00000635418 1910 ntBASIC2.87□□□□□ -1.95
PRPF39Q86UA1 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.87□□□□□ -1.95
PRPF39Q86UA1 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
PRPF39Q86UA1 MIR412-201ENST00000362142 91 ntBASIC2.87□□□□□ -1.95
PRPF39Q86UA1 Y_RNA.77-201ENST00000362962 107 ntBASIC2.87□□□□□ -1.95
PRPF39Q86UA1 RNU6-1097P-201ENST00000363586 107 ntBASIC2.87□□□□□ -1.95
PRPF39Q86UA1 SNORA62.1-201ENST00000364287 154 ntBASIC2.87□□□□□ -1.95
PRPF39Q86UA1 Y_RNA.367-201ENST00000365544 101 ntBASIC2.87□□□□□ -1.95
PRPF39Q86UA1 SNORA18.3-201ENST00000384122 132 ntBASIC2.87□□□□□ -1.95
PRPF39Q86UA1 RNU6-1179P-201ENST00000384667 107 ntBASIC2.87□□□□□ -1.95
PRPF39Q86UA1 MIR218-1-201ENST00000384999 110 ntBASIC2.87□□□□□ -1.95
PRPF39Q86UA1 RNA5SP492-201ENST00000411330 114 ntBASIC2.87□□□□□ -1.95
PRPF39Q86UA1 PIGFP2-201ENST00000421400 651 ntBASIC2.87□□□□□ -1.95
PRPF39Q86UA1 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC2.87□□□□□ -1.95
PRPF39Q86UA1 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC2.87□□□□□ -1.95
PRPF39Q86UA1 FABP5P14-201ENST00000437273 393 ntBASIC2.87□□□□□ -1.95
PRPF39Q86UA1 RPL21P2-201ENST00000440049 481 ntBASIC2.87□□□□□ -1.95
PRPF39Q86UA1 MTCYBP1-201ENST00000454315 1119 ntBASIC2.87□□□□□ -1.95
PRPF39Q86UA1 KLF3P2-201ENST00000465138 268 ntBASIC2.87□□□□□ -1.95
PRPF39Q86UA1 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.87□□□□□ -1.95
PRPF39Q86UA1 ARL2BPP4-201ENST00000506854 471 ntBASIC2.87□□□□□ -1.95
PRPF39Q86UA1 AC104806.1-201ENST00000508720 308 ntBASIC2.87□□□□□ -1.95
PRPF39Q86UA1 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC2.87□□□□□ -1.95
PRPF39Q86UA1 AC117532.1-201ENST00000514638 323 ntBASIC2.87□□□□□ -1.95
PRPF39Q86UA1 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC2.87□□□□□ -1.95
PRPF39Q86UA1 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
PRPF39Q86UA1 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.87□□□□□ -1.95
PRPF39Q86UA1 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC2.87□□□□□ -1.95
PRPF39Q86UA1 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.87□□□□□ -1.95
PRPF39Q86UA1 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.87□□□□□ -1.95
PRPF39Q86UA1 AC010620.1-201ENST00000601088 1102 ntBASIC2.87□□□□□ -1.95
PRPF39Q86UA1 uc_338.14-201ENST00000613162 166 ntBASIC2.87□□□□□ -1.95
PRPF39Q86UA1 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
PRPF39Q86UA1 AC093648.1-201ENST00000623546 606 ntBASIC2.87□□□□□ -1.95
PRPF39Q86UA1 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC2.87□□□□□ -1.95
PRPF39Q86UA1 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
PRPF39Q86UA1 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.87□□□□□ -1.95
PRPF39Q86UA1 AC080128.1-201ENST00000474389 1917 ntBASIC2.87□□□□□ -1.95
PRPF39Q86UA1 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
PRPF39Q86UA1 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.87□□□□□ -1.95
PRPF39Q86UA1 MTND5P17-201ENST00000418405 1603 ntBASIC2.86□□□□□ -1.95
PRPF39Q86UA1 AC093536.2-201ENST00000565257 1406 ntBASIC2.86□□□□□ -1.95
PRPF39Q86UA1 RNU6-108P-201ENST00000365558 107 ntBASIC2.86□□□□□ -1.95
PRPF39Q86UA1 SNORA26.7-201ENST00000391288 122 ntBASIC2.86□□□□□ -1.95
PRPF39Q86UA1 Y_RNA.623-201ENST00000411128 95 ntBASIC2.86□□□□□ -1.95
PRPF39Q86UA1 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC2.86□□□□□ -1.95
PRPF39Q86UA1 Z98742.2-201ENST00000431564 187 ntBASIC2.86□□□□□ -1.95
PRPF39Q86UA1 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.86□□□□□ -1.95
PRPF39Q86UA1 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.86□□□□□ -1.95
PRPF39Q86UA1 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC2.86□□□□□ -1.95
PRPF39Q86UA1 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.86□□□□□ -1.95
PRPF39Q86UA1 AC012308.1-201ENST00000451232 178 ntBASIC2.86□□□□□ -1.95
PRPF39Q86UA1 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC2.86□□□□□ -1.95
PRPF39Q86UA1 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.86□□□□□ -1.95
PRPF39Q86UA1 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC2.86□□□□□ -1.95
PRPF39Q86UA1 AP001324.2-201ENST00000461163 319 ntBASIC2.86□□□□□ -1.95
PRPF39Q86UA1 AC003982.1-202ENST00000469928 248 ntBASIC2.86□□□□□ -1.95
PRPF39Q86UA1 RN7SL297P-201ENST00000483161 293 ntBASIC2.86□□□□□ -1.95
PRPF39Q86UA1 AC023141.11-201ENST00000508864 202 ntBASIC2.86□□□□□ -1.95
PRPF39Q86UA1 MTCO3P28-201ENST00000513351 515 ntBASIC2.86□□□□□ -1.95
PRPF39Q86UA1 AC112206.3-201ENST00000514578 389 ntBASIC2.86□□□□□ -1.95
PRPF39Q86UA1 RN7SKP132-201ENST00000516001 208 ntBASIC2.86□□□□□ -1.95
PRPF39Q86UA1 ACA59.2-201ENST00000517061 156 ntBASIC2.86□□□□□ -1.95
PRPF39Q86UA1 OR4R1P-201ENST00000529879 463 ntBASIC2.86□□□□□ -1.95
PRPF39Q86UA1 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC2.86□□□□□ -1.95
PRPF39Q86UA1 MIR3162-201ENST00000581818 82 ntBASIC2.86□□□□□ -1.95
PRPF39Q86UA1 MIR4672-201ENST00000583126 81 ntBASIC2.86□□□□□ -1.95
PRPF39Q86UA1 AC110760.3-201ENST00000598794 467 ntBASIC2.86□□□□□ -1.95
PRPF39Q86UA1 AC119751.7-201ENST00000600494 245 ntBASIC2.86□□□□□ -1.95
PRPF39Q86UA1 AL356280.1-201ENST00000603614 379 ntBASIC2.86□□□□□ -1.95
PRPF39Q86UA1 ATP1B3P1-201ENST00000605365 821 ntBASIC2.86□□□□□ -1.95
PRPF39Q86UA1 AC098614.4-201ENST00000607601 462 ntBASIC2.86□□□□□ -1.95
PRPF39Q86UA1 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC2.86□□□□□ -1.95
PRPF39Q86UA1 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.86□□□□□ -1.95
PRPF39Q86UA1 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.86□□□□□ -1.95
PRPF39Q86UA1 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.86□□□□□ -1.95
PRPF39Q86UA1 MTND4P27-201ENST00000450813 1354 ntBASIC2.86□□□□□ -1.95
PRPF39Q86UA1 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.86□□□□□ -1.95
PRPF39Q86UA1 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.85□□□□□ -1.95
PRPF39Q86UA1 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC2.85□□□□□ -1.95
PRPF39Q86UA1 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.85□□□□□ -1.95
PRPF39Q86UA1 DLEU2_6.3-201ENST00000340052 136 ntBASIC2.85□□□□□ -1.95
PRPF39Q86UA1 RNU6-858P-201ENST00000362436 107 ntBASIC2.85□□□□□ -1.95
PRPF39Q86UA1 RNU6-1287P-201ENST00000362914 107 ntBASIC2.85□□□□□ -1.95
PRPF39Q86UA1 RNU6-116P-201ENST00000384042 109 ntBASIC2.85□□□□□ -1.95
PRPF39Q86UA1 RNU6-748P-201ENST00000384648 107 ntBASIC2.85□□□□□ -1.95
PRPF39Q86UA1 RNU6-1060P-201ENST00000384664 107 ntBASIC2.85□□□□□ -1.95
PRPF39Q86UA1 Y_RNA.576-201ENST00000384781 102 ntBASIC2.85□□□□□ -1.95
PRPF39Q86UA1 MIR34A-201ENST00000385130 110 ntBASIC2.85□□□□□ -1.95
PRPF39Q86UA1 RPL19P1-201ENST00000411635 428 ntBASIC2.85□□□□□ -1.95
PRPF39Q86UA1 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC2.85□□□□□ -1.95
PRPF39Q86UA1 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC2.85□□□□□ -1.95
PRPF39Q86UA1 TOMM20P4-201ENST00000427861 435 ntBASIC2.85□□□□□ -1.95
PRPF39Q86UA1 MYL8P-204ENST00000431574 518 ntBASIC2.85□□□□□ -1.95
PRPF39Q86UA1 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC2.85□□□□□ -1.95
PRPF39Q86UA1 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC2.85□□□□□ -1.95
PRPF39Q86UA1 AC018693.1-201ENST00000442829 550 ntTSL 4 BASIC2.85□□□□□ -1.95
PRPF39Q86UA1 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.85□□□□□ -1.95
PRPF39Q86UA1 AC022364.2-201ENST00000457963 554 ntBASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 111 ms