Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 AL132822.1-201ENST00000617063 513 ntBASIC4.03□□□□□ -1.76
USP53Q70EK8 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC4.03□□□□□ -1.76
USP53Q70EK8 MPP6-209ENST00000625307 126 ntTSL 5 BASIC4.03□□□□□ -1.76
USP53Q70EK8 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC4.03□□□□□ -1.76
USP53Q70EK8 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4.03□□□□□ -1.76
USP53Q70EK8 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC4.03□□□□□ -1.76
USP53Q70EK8 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
USP53Q70EK8 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
USP53Q70EK8 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.03□□□□□ -1.76
USP53Q70EK8 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.03□□□□□ -1.76
USP53Q70EK8 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
USP53Q70EK8 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
USP53Q70EK8 AC022336.2-201ENST00000568966 2538 ntBASIC4.02□□□□□ -1.77
USP53Q70EK8 MTND5P1-201ENST00000445440 1375 ntBASIC4.02□□□□□ -1.77
USP53Q70EK8 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
USP53Q70EK8 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.02□□□□□ -1.77
USP53Q70EK8 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
USP53Q70EK8 AC106871.1-201ENST00000568324 3102 ntBASIC4.02□□□□□ -1.77
USP53Q70EK8 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.02□□□□□ -1.77
USP53Q70EK8 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
USP53Q70EK8 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
USP53Q70EK8 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
USP53Q70EK8 Y_RNA.577-201ENST00000384794 101 ntBASIC4.02□□□□□ -1.77
USP53Q70EK8 MIR7-3-201ENST00000384898 110 ntBASIC4.02□□□□□ -1.77
USP53Q70EK8 MIR449B-201ENST00000384995 97 ntBASIC4.02□□□□□ -1.77
USP53Q70EK8 Y_RNA.645-201ENST00000391229 102 ntBASIC4.02□□□□□ -1.77
USP53Q70EK8 RNA5SP39-201ENST00000411245 120 ntBASIC4.02□□□□□ -1.77
USP53Q70EK8 HNRNPDLP1-201ENST00000412834 550 ntBASIC4.02□□□□□ -1.77
USP53Q70EK8 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC4.02□□□□□ -1.77
USP53Q70EK8 YME1L1P1-201ENST00000429435 297 ntBASIC4.02□□□□□ -1.77
USP53Q70EK8 FTH1P6-201ENST00000430768 320 ntBASIC4.02□□□□□ -1.77
USP53Q70EK8 CEP57L1P1-201ENST00000430943 1201 ntBASIC4.02□□□□□ -1.77
USP53Q70EK8 AL353748.1-201ENST00000440753 474 ntBASIC4.02□□□□□ -1.77
USP53Q70EK8 PPBPP1-201ENST00000510807 373 ntBASIC4.02□□□□□ -1.77
USP53Q70EK8 Y_RNA.687-201ENST00000516558 91 ntBASIC4.02□□□□□ -1.77
USP53Q70EK8 AP000889.1-201ENST00000530968 660 ntBASIC4.02□□□□□ -1.77
USP53Q70EK8 AC103996.1-201ENST00000555468 102 ntBASIC4.02□□□□□ -1.77
USP53Q70EK8 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC4.02□□□□□ -1.77
USP53Q70EK8 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC4.02□□□□□ -1.77
USP53Q70EK8 MTND6P33-201ENST00000571794 183 ntBASIC4.02□□□□□ -1.77
USP53Q70EK8 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC4.02□□□□□ -1.77
USP53Q70EK8 MIR5685-201ENST00000579080 79 ntBASIC4.02□□□□□ -1.77
USP53Q70EK8 MIR3671-201ENST00000580455 88 ntBASIC4.02□□□□□ -1.77
USP53Q70EK8 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.02□□□□□ -1.77
USP53Q70EK8 TTK-211ENST00000627129 240 ntTSL 5 BASIC4.02□□□□□ -1.77
USP53Q70EK8 U2.21-201ENST00000637295 81 ntBASIC4.02□□□□□ -1.77
USP53Q70EK8 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.02□□□□□ -1.77
USP53Q70EK8 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
USP53Q70EK8 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC4.02□□□□□ -1.77
USP53Q70EK8 AC090740.1-201ENST00000623193 2262 ntBASIC4.02□□□□□ -1.77
USP53Q70EK8 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
USP53Q70EK8 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.02□□□□□ -1.77
USP53Q70EK8 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC4.01□□□□□ -1.77
USP53Q70EK8 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
USP53Q70EK8 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
USP53Q70EK8 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.01□□□□□ -1.77
USP53Q70EK8 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
USP53Q70EK8 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
USP53Q70EK8 Y_RNA.455-201ENST00000384230 98 ntBASIC4.01□□□□□ -1.77
USP53Q70EK8 RNU6-196P-201ENST00000384315 107 ntBASIC4.01□□□□□ -1.77
USP53Q70EK8 MIR3074-201ENST00000384885 81 ntBASIC4.01□□□□□ -1.77
USP53Q70EK8 AL138885.1-201ENST00000405921 675 ntBASIC4.01□□□□□ -1.77
USP53Q70EK8 RNA5SP239-201ENST00000410218 129 ntBASIC4.01□□□□□ -1.77
USP53Q70EK8 RNU2-23P-201ENST00000410545 195 ntBASIC4.01□□□□□ -1.77
USP53Q70EK8 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC4.01□□□□□ -1.77
USP53Q70EK8 YPEL5P1-201ENST00000419731 367 ntBASIC4.01□□□□□ -1.77
USP53Q70EK8 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
USP53Q70EK8 MTCYBP9-201ENST00000431021 303 ntBASIC4.01□□□□□ -1.77
USP53Q70EK8 AL353997.1-201ENST00000432936 108 ntBASIC4.01□□□□□ -1.77
USP53Q70EK8 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC4.01□□□□□ -1.77
USP53Q70EK8 IPO7P1-201ENST00000442031 636 ntBASIC4.01□□□□□ -1.77
USP53Q70EK8 AL451050.1-201ENST00000450126 415 ntBASIC4.01□□□□□ -1.77
USP53Q70EK8 RPL7P49-201ENST00000471402 708 ntBASIC4.01□□□□□ -1.77
USP53Q70EK8 FO393415.2-201ENST00000480085 343 ntBASIC4.01□□□□□ -1.77
USP53Q70EK8 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
USP53Q70EK8 MTCO2P24-201ENST00000515611 426 ntBASIC4.01□□□□□ -1.77
USP53Q70EK8 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.01□□□□□ -1.77
USP53Q70EK8 IFITM8P-201ENST00000522529 394 ntBASIC4.01□□□□□ -1.77
USP53Q70EK8 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC4.01□□□□□ -1.77
USP53Q70EK8 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC4.01□□□□□ -1.77
USP53Q70EK8 RN7SL703P-201ENST00000578485 302 ntBASIC4.01□□□□□ -1.77
USP53Q70EK8 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC4.01□□□□□ -1.77
USP53Q70EK8 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC4.01□□□□□ -1.77
USP53Q70EK8 AC104695.3-201ENST00000604052 296 ntBASIC4.01□□□□□ -1.77
USP53Q70EK8 AL355598.1-201ENST00000604169 202 ntBASIC4.01□□□□□ -1.77
USP53Q70EK8 MIR8076-201ENST00000611401 83 ntBASIC4.01□□□□□ -1.77
USP53Q70EK8 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC4.01□□□□□ -1.77
USP53Q70EK8 SCARNA4-202ENST00000625402 129 ntBASIC4.01□□□□□ -1.77
USP53Q70EK8 AL606534.2-204ENST00000635008 178 ntBASIC4.01□□□□□ -1.77
USP53Q70EK8 U6.99-201ENST00000637524 83 ntBASIC4.01□□□□□ -1.77
USP53Q70EK8 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
USP53Q70EK8 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
USP53Q70EK8 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
USP53Q70EK8 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
USP53Q70EK8 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
USP53Q70EK8 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
USP53Q70EK8 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC4□□□□□ -1.77
USP53Q70EK8 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC4□□□□□ -1.77
USP53Q70EK8 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4□□□□□ -1.77
USP53Q70EK8 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC4□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 232.6 ms